Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033590 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 0.0e+00 1201.0 608 100.0
CSS0042492 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 5.4e-310 1067.0 608 91.3
Rhsim06G0237700 Rhododendron simsii HOM05D007146 ORTHO05D008971 2.5e-251 872.1 614 73.8
vmacro11655 Vaccinium macrocarpon HOM05D007146 ORTHO05D008971 2.4e-241 839.0 627 70.2
DCAR_009636 Daucus carota HOM05D007146 ORTHO05D008971 8.3e-202 707.6 594 64.3
GSVIVG01020477001 Vitis vinifera HOM05D007146 ORTHO05D008971 1.3e-191 673.7 594 59.9
COL.COLO4_05069 Corchorus olitorius HOM05D007146 ORTHO05D008971 4.3e-190 668.7 608 58.6
Nn7g37748 Nelumbo nucifera HOM05D007146 ORTHO05D008971 1.2e-189 667.2 604 59.9
CiPaw.11G069000 Carya illinoinensis HOM05D007146 ORTHO05D008971 3.2e-185 652.5 600 59.2
FAN11G2635 Fragaria x ananassa HOM05D007146 ORTHO05D008971 3.2e-185 652.5 594 58.4
FvH4_3g16020 Fragaria vesca HOM05D007146 ORTHO05D008971 5.4e-185 651.7 595 58.0
Prupe.4G143400 Prunus persica HOM05D007146 ORTHO05D008971 1.0e-183 647.5 595 57.8
RcHm_v2.0_Chr5g0027001 Rosa chinensis HOM05D007146 ORTHO05D008971 1.9e-182 643.3 594 57.9
SalBow8G2846 Salvia bowleyana HOM05D007146 ORTHO05D008971 1.9e-182 643.3 594 57.1
Atru.chr2.1879 Acer truncatum HOM05D007146 ORTHO05D008971 3.3e-182 642.5 596 57.4
Cc05_g15970 Coffea canephora HOM05D007146 ORTHO05D008971 5.6e-182 641.7 594 57.2
Gorai.004G269700 Gossypium raimondii HOM05D007146 ORTHO05D008971 3.6e-181 639.0 596 57.9
TWI38G0129 Tripterygium wilfordii HOM05D007146 ORTHO05D008971 3.6e-181 639.0 598 58.0
Sopen07g034520 Solanum pennellii HOM05D007146 ORTHO05D008971 1.1e-180 637.5 601 56.4
Solyc07g066340.3 Solanum lycopersicum HOM05D007146 ORTHO05D008971 1.4e-180 637.1 606 56.4
CAN.G943.29 Capsicum annuum HOM05D007146 ORTHO05D008971 2.3e-180 636.3 597 56.3
SGA_v2.0_scaffold186G40227 Striga asiatica HOM05D007146 ORTHO05D008971 2.3e-180 636.3 596 57.6
MD05G1215600 Malus domestica HOM05D007146 ORTHO05D008971 6.8e-180 634.8 602 57.1
Oeu002808.1 Olea europaea HOM05D007146 ORTHO05D008971 8.9e-180 634.4 691 52.8
PGSC0003DMG401022133 Solanum tuberosum HOM05D007146 ORTHO05D008971 8.9e-180 634.4 601 56.2
Aqoxy4G00043_Aqoxy4G00044 Aquilegia oxysepala HOM05D007146 ORTHO05D008971 1.2e-179 634.0 592 56.6
Eucgr.F01450 Eucalyptus grandis HOM05D007146 ORTHO05D008971 2.4e-177 626.3 597 58.1
Potri.007G065300 Populus trichocarpa HOM05D007146 ORTHO05D008971 4.1e-177 625.5 592 56.9
Sabra07G0052900 Salix brachista HOM05D007146 ORTHO05D008971 1.3e-175 620.5 592 56.4
Peaxi162Scf00232g01133 Petunia axillaris HOM05D007146 ORTHO05D008971 3.3e-174 615.9 600 54.5
PGR083G2275 Punica granatum HOM05D007146 ORTHO05D008971 3.6e-173 612.5 592 56.4
ClCG11G016310 Citrullus lanatus HOM05D007146 ORTHO05D008971 1.2e-171 607.4 608 54.1
Glyma.08G173200 Glycine max HOM05D007146 ORTHO05D008971 2.0e-171 606.7 600 54.3
FAN25G2803 Fragaria x ananassa HOM05D007146 ORTHO05D008971 1.7e-170 603.6 569 56.9
THA.LOC104812351 Tarenaya hassleriana HOM05D007146 ORTHO05D008971 1.7e-170 603.6 591 56.3
Phvul.005G055600 Phaseolus vulgaris HOM05D007146 ORTHO05D008971 3.7e-170 602.4 593 54.5
TPR.G9764 Trifolium pratense HOM05D007146 ORTHO05D008971 1.4e-169 600.5 598 54.0
HanXRQChr05g0160631 Helianthus annuus HOM05D007146 ORTHO05D008971 9.2e-169 597.8 593 55.8
Lj3g0000430 Lotus japonicus HOM05D007146 ORTHO05D008971 2.7e-168 596.3 597 54.4
Lalb_Chr25g0285151 Lupinus albus HOM05D007146 ORTHO05D008971 4.6e-168 595.5 591 54.0
PSO675G2245 Papaver somniferum HOM05D007146 ORTHO05D008971 4.6e-168 595.5 594 55.9
Thhalv10007372m.g Eutrema salsugineum HOM05D007146 ORTHO05D008971 7.8e-168 594.7 594 54.0
BolC5t30209H Brassica oleracea HOM05D007146 ORTHO05D008971 1.7e-167 593.6 594 54.0
CsaV3_2G022170 Cucumis sativus L. HOM05D007146 ORTHO05D008971 1.7e-167 593.6 595 53.6
PSO541G2405 Papaver somniferum HOM05D007146 ORTHO05D008971 2.3e-167 593.2 597 54.4
Medtr2g064450 Medicago truncatula HOM05D007146 ORTHO05D008971 3.0e-167 592.8 598 53.7
Sed0009835 Sechium edule HOM05D007146 ORTHO05D008971 3.9e-167 592.4 595 54.8
Aa31LG7G1140 Aethionema arabicum HOM05D007146 ORTHO05D008971 5.1e-167 592.0 596 53.4
AT1G16650 Arabidopsis thaliana HOM05D007146 ORTHO05D008971 1.1e-166 590.9 592 54.2
A06p12640 Brassica napus HOM05D007146 ORTHO05D008971 7.3e-166 588.2 593 53.6
C05p14940 Brassica napus HOM05D007146 ORTHO05D008971 2.1e-165 586.6 594 53.5
AL1G28820 Arabidopsis lyrata HOM05D007146 ORTHO05D008971 6.2e-165 585.1 592 53.7
BcaC05g25529 Brassica carinata HOM05D007146 ORTHO05D008971 3.1e-164 582.8 601 53.4
Manes.03G082700 Manihot esculenta HOM05D007146 ORTHO05D008971 6.8e-164 581.6 596 54.2
Carub.0001s1639 Capsella rubella HOM05D007146 ORTHO05D008971 4.4e-163 578.9 592 52.7
BraA06t24425Z Brassica rapa HOM05D007146 ORTHO05D008971 5.4e-161 572.0 613 51.4
MBI02_g25677_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 4.0e-156 555.8 556 54.3
Lsat_1_v5_gn_9_46800 Lactuca sativa HOM05D007146 ORTHO05D008971 5.2e-156 555.4 620 51.3
FAN21G1125 Fragaria x ananassa HOM05D007146 ORTHO05D008971 6.4e-154 548.5 532 55.3
arahy.Tifrunner.gnm1.ann1.5W7G8A Arachis hypogaea HOM05D007146 ORTHO05D008971 1.4e-153 547.4 645 47.8
arahy.Tifrunner.gnm1.ann1.L14HV7 Arachis hypogaea HOM05D007146 ORTHO05D008971 9.3e-153 544.7 645 47.4
Gohir.D08G252900 Gossypium hirsutum HOM05D007146 ORTHO05D008971 1.6e-152 543.9 538 54.5
HPP92_018693 Vanilla planifolia HOM05D007146 ORTHO05D008971 1.9e-150 537.0 598 50.5
Duzib213G0540 Durio zibethinus HOM05D007146 ORTHO05D008971 6.2e-149 531.9 546 54.6
ATR1098G072 Amborella trichopoda HOM05D007146 ORTHO05D008971 1.1e-148 531.2 592 49.8
EL10Ac4g08556 Beta vulgaris HOM05D007146 ORTHO05D008971 2.0e-147 526.9 558 53.0
Os12g0610500 Oryza sativa ssp. japonica HOM05D007146 ORTHO05D008971 3.8e-146 522.7 592 48.8
MELO3C010557.2 Cucumis melo HOM05D007146 ORTHO05D008971 2.7e-144 516.5 602 50.0
Nitab4.5_0002933g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 2.1e-141 506.9 597 49.1
VMungo1080G0158 Vigna mungo HOM05D007146 ORTHO05D008971 3.4e-139 499.6 533 51.0
HPP92_018676 Vanilla planifolia HOM05D007146 ORTHO05D008971 3.2e-137 493.0 554 50.4
Psat1g002520 Pisum sativum HOM05D007146 ORTHO05D008971 9.3e-137 491.5 416 59.6
Nitab4.5_0000313g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 3.5e-136 489.6 380 65.3
Gohir.A08G232700 Gossypium hirsutum HOM05D007146 ORTHO05D008971 4.2e-129 466.1 536 49.1
Zm00001eb135900 Zea mays HOM05D007146 ORTHO05D008971 5.1e-127 459.1 549 47.2
unitig_749.g13702 Utricularia gibba HOM05D007146 ORTHO05D008971 1.6e-125 454.1 621 45.1
Migut.M01565 Erythranthe guttata HOM05D007146 ORTHO05D008971 1.1e-116 424.9 352 61.6
Ah.06g187050 Amaranthus hybridus HOM05D007146 ORTHO05D008971 2.0e-110 404.1 449 48.1
Lj8C186T10 Lonicera japonica HOM05D007146 ORTHO05D008971 4.8e-109 399.4 412 56.8
TAR627G0841 Trochodendron aralioides HOM05D007146 ORTHO05D008971 4.8e-109 399.4 389 59.1
Pp3c14_6050 Physcomitrium patens HOM05D007146 ORTHO05D008971 4.7e-104 382.9 598 40.0
SMO143G0033 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 1.1e-100 371.7 590 37.6
Pp3c1_21800 Physcomitrium patens HOM05D007146 ORTHO05D008971 2.6e-99 367.1 606 36.8
MSTRG.16117 Avicennia marina HOM05D007146 ORTHO05D008971 5.3e-92 342.8 292 60.6
Ciclev10021587m.g Citrus clementina HOM05D007146 ORTHO05D008971 7.0e-92 342.4 293 60.8
Thecc.07G156000 Theobroma cacao HOM05D007146 ORTHO05D008971 7.7e-91 339.0 292 60.3
Sp1g14790 Schrenkiella parvula HOM05D007146 ORTHO05D008971 7.5e-86 322.4 399 48.9
AagrBONN_evm.TU.Sc2ySwM_368.537 Anthoceros agrestis HOM05D007146 ORTHO05D008971 4.7e-80 303.1 488 39.1
Thecc.07G156300 Theobroma cacao HOM05D007146 ORTHO05D008971 1.3e-74 285.0 270 58.1
AUR62041925 Chenopodium quinoa HOM05D007146 ORTHO05D008971 2.3e-74 284.3 292 53.8
CDE03G0452 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 1.5e-70 271.6 474 39.9
Ca_03693_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 2.0e-67 261.2 201 63.2
Ciclev10022203m.g Citrus clementina HOM05D007146 ORTHO05D008971 2.0e-54 218.0 235 54.9
SEGI_13316 Sequoiadendron giganteum HOM05D007146 ORTHO05D008971 1.9e-52 211.5 241 51.0
Hund10273 Selenicereus undatus HOM05D007146 ORTHO05D008971 3.8e-45 187.2 128 66.4
CARHR017120 Cardamine hirsuta HOM05D007146 ORTHO05D008971 2.4e-44 184.5 199 54.3
DCAR_002379 Daucus carota HOM05D007146 ORTHO05D008971 1.3e-42 178.7 246 45.1
Ca_03695_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 4.3e-41 173.7 219 45.2
Ca_03700_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 4.3e-41 173.7 219 45.2
CDE03G0405 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 4.7e-40 170.2 117 62.4
Cpa.g.sc10.33 Carica papaya HOM05D007146 ORTHO05D008971 5.8e-38 163.3 97 74.2
Ah.06g187020 Amaranthus hybridus HOM05D007146 ORTHO05D008971 1.9e-33 148.3 220 43.2
Cpa.g.sc10.30 Carica papaya HOM05D007146 ORTHO05D008971 1.6e-32 145.2 204 47.5
Sc07g0003080 Simmondsia chinensis HOM05D007146 ORTHO05D008971 1.2e-27 129.0 95 66.3
Hund10306 Selenicereus undatus HOM05D007146 ORTHO05D008971 3.8e-21 107.5 149 47.7
Haze_08528 Corylus avellana HOM05D007146 ORTHO05D008971 5.1e-18 97.1 158 38.0
MBI02_g40068_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 2.1e-16 91.7 162 37.0
SMO246G0022 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 3.2e-12 77.8 90 48.9
FAN16G0561 Fragaria x ananassa HOM05D007146 ORTHO05D008971 3.1e-07 61.2 69 49.3


User provided reference genes

Program Settings