Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.4e-158 561.2 280 100.0
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.3e-112 410.2 229 91.7
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 8.4e-109 397.5 229 91.3
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.3e-93 347.1 188 89.9
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 1.5e-81 307.0 188 76.6
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 4.4e-81 305.4 188 79.3
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 1.2e-78 297.4 188 77.1
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.5e-73 280.4 188 73.4
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.5e-73 280.4 188 73.4
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.8e-72 275.4 260 65.0
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 1.3e-69 267.3 188 68.6
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 5.0e-69 265.4 188 68.6
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.1e-67 260.0 188 67.6
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.1e-67 260.0 188 67.6
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 5.2e-66 255.4 188 66.5
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 1.2e-65 254.2 188 65.4
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 1.7e-64 250.4 188 64.4
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 2.2e-64 250.0 154 79.9
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 2.2e-64 250.0 154 79.9
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 6.3e-64 248.4 188 66.0
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 8.3e-64 248.1 188 64.4
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 1.4e-63 247.3 187 64.2
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.8e-63 246.9 188 63.8
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 1.8e-63 246.9 188 62.2
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 5.4e-63 245.4 188 64.4
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 7.0e-63 245.0 188 63.3
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 7.0e-63 245.0 188 63.3
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 9.1e-63 244.6 179 65.9
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 1.2e-62 244.2 188 62.2
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.6e-62 243.8 188 61.2
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 2.0e-62 243.4 188 63.8
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 3.5e-62 242.7 188 63.3
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.5e-62 242.7 188 63.3
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.5e-62 242.7 188 63.3
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.5e-62 242.7 188 63.3
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 3.5e-62 242.7 188 64.9
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 4.5e-62 242.3 185 63.2
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 1.3e-61 240.7 188 63.8
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 1.7e-61 240.4 187 62.0
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 3.8e-61 239.2 188 63.3
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 6.5e-61 238.4 188 60.6
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 8.5e-61 238.0 188 63.3
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 8.5e-61 238.0 188 63.3
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 1.1e-60 237.7 188 59.6
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 1.5e-60 237.3 187 61.5
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.9e-60 236.9 187 61.5
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 2.5e-60 236.5 188 60.1
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 5.5e-60 235.3 185 62.2
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 5.5e-60 235.3 187 62.0
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 7.2e-60 235.0 184 63.6
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 7.2e-60 235.0 188 60.1
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 9.4e-60 234.6 187 59.9
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 1.2e-59 234.2 188 60.6
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 2.1e-59 233.4 186 61.3
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 6.1e-59 231.9 187 59.9
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 8.0e-59 231.5 187 63.1
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 8.0e-59 231.5 187 63.1
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 1.0e-58 231.1 188 59.6
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 1.0e-58 231.1 188 59.6
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 1.0e-58 231.1 188 62.2
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 3.0e-58 229.6 188 60.6
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 6.8e-58 228.4 188 59.0
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 6.8e-58 228.4 188 59.0
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 1.2e-57 227.6 188 59.6
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 1.2e-57 227.6 187 59.4
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.5e-57 227.3 187 60.4
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 1.5e-57 227.3 188 59.0
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 3.4e-57 226.1 187 59.9
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 3.4e-57 226.1 187 62.6
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 3.4e-57 226.1 188 60.1
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 1.3e-56 224.2 188 56.9
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 1.7e-56 223.8 188 59.0
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 3.7e-56 222.6 188 59.6
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 4.9e-56 222.2 188 60.6
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 6.3e-56 221.9 188 59.0
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 8.3e-56 221.5 186 60.2
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 1.1e-55 221.1 186 60.2
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 1.4e-55 220.7 189 56.1
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 2.4e-55 219.9 184 59.2
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 2.4e-55 219.9 188 59.6
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 3.1e-55 219.5 188 58.5
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 7.0e-55 218.4 188 59.0
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 3.5e-54 216.1 186 59.1
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 4.5e-54 215.7 186 59.1
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 5.9e-54 215.3 188 58.0
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 7.7e-54 214.9 188 58.0
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 2.9e-53 213.0 188 57.4
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.9e-53 213.0 188 55.9
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 2.5e-52 209.9 154 66.2
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 2.1e-51 206.8 154 65.6
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 3.6e-51 206.1 188 56.4
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 1.4e-50 204.1 188 56.9
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 5.2e-50 202.2 185 56.2
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 4.4e-49 199.1 187 53.5
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 8.3e-48 194.9 143 65.7
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 9.2e-47 191.4 188 54.3
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 1.2e-46 191.0 188 51.6
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 2.0e-46 190.3 187 50.3
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 3.1e-42 176.4 154 57.8
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 3.7e-40 169.5 186 48.4
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 5.4e-39 165.6 133 59.4
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 7.0e-39 165.2 186 47.3
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.3e-37 161.0 177 49.7
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 3.0e-37 159.8 188 47.9
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.1e-35 153.7 177 48.6
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 1.4e-34 151.0 126 60.3
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 2.2e-32 143.7 180 42.8
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.1e-31 139.4 132 54.5
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 9.2e-31 138.3 170 44.7
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 3.3e-28 129.8 128 58.6
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 6.2e-27 125.6 90 68.9
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 2.2e-24 117.1 125 50.4
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 1.9e-23 114.0 185 36.2
CSS0035646 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 5.4e-23 112.5 58 93.1
CSS0046266 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 5.4e-23 112.5 58 93.1
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 5.4e-23 112.5 88 62.5
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.5e-20 104.4 177 38.4
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.5e-20 104.4 177 38.4
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 4.3e-20 102.8 154 37.7
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 4.0e-18 96.3 152 38.8
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 3.0e-13 80.1 148 35.8
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 2.8e-11 73.6 129 34.1
Actinidia39094 Actinidia chinensis HOM05D001027 ORTHO05D000844 9.0e-10 68.6 82 47.6
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 1.7e-08 64.3 80 41.2
Hma1.2p1_1128F.1_g259680 Hydrangea macrophylla HOM05D001027 ORTHO05D000844 3.2e-07 60.1 50 64.0
Actinidia26042 Actinidia chinensis HOM05D001027 ORTHO05D000844 5.4e-07 59.3 66 47.0
QL05p009530 Quercus lobata HOM05D001027 ORTHO05D000844 1.6e-06 57.8 70 44.3
ClCG07G013890 Citrullus lanatus HOM05D001027 ORTHO05D000844 4.6e-06 56.2 70 44.3
Sed0000203 Sechium edule HOM05D001027 ORTHO05D000844 6.0e-06 55.8 70 41.4


User provided reference genes

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