Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 0.0e+00 1084.7 581 100.0
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 8.9e-238 827.0 586 72.7
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 8.1e-231 803.9 586 70.6
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 1.7e-228 796.2 586 72.9
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 3.4e-221 771.9 561 71.1
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 7.9e-218 760.8 586 67.9
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 3.5e-210 735.3 587 66.4
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 4.2e-203 711.8 599 65.8
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 7.1e-203 711.1 583 64.5
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 6.7e-201 704.5 612 60.1
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 2.5e-195 686.0 584 61.6
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 1.6e-194 683.3 584 64.0
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 3.9e-193 678.7 587 60.3
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 1.5e-192 676.8 586 60.2
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 2.4e-190 669.5 584 63.9
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 6.9e-190 667.9 584 59.9
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 9.1e-190 667.5 587 60.8
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 2.0e-189 666.4 589 60.4
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 3.4e-189 665.6 587 59.6
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.0e-188 664.1 587 60.1
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.3e-188 663.7 588 59.5
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 4.2e-187 658.7 589 59.3
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 5.5e-187 658.3 561 63.6
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 7.2e-187 657.9 588 60.0
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.2e-186 657.1 585 58.3
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 4.7e-186 655.2 584 60.1
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 3.0e-185 652.5 585 60.3
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 1.1e-184 650.6 586 61.3
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 1.1e-184 650.6 595 59.3
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 1.1e-184 650.6 586 61.9
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 2.0e-184 649.8 586 60.4
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 4.8e-183 645.2 592 61.7
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 4.8e-183 645.2 586 58.7
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 3.1e-182 642.5 587 59.5
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 5.3e-182 641.7 587 59.3
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 6.9e-182 641.3 591 59.2
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 6.9e-182 641.3 592 56.2
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 1.2e-181 640.6 587 59.5
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.0e-181 639.8 587 60.1
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 2.6e-181 639.4 587 59.3
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 2.2e-180 636.3 586 57.5
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 5.0e-180 635.2 589 59.1
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 6.5e-180 634.8 596 57.6
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 7.2e-179 631.3 592 58.8
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 3.0e-177 625.9 585 54.7
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 6.3e-175 618.2 618 54.5
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 8.2e-175 617.8 685 53.0
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 3.1e-174 615.9 578 55.9
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 9.1e-174 614.4 584 57.0
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 2.0e-173 613.2 585 54.2
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 2.0e-173 613.2 602 58.5
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 3.5e-173 612.5 591 55.7
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 3.8e-172 609.0 592 54.9
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.1e-171 607.4 591 57.2
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.1e-171 607.4 595 56.8
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 1.5e-171 607.1 588 57.1
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 1.5e-171 607.1 654 53.1
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 1.5e-171 607.1 588 58.7
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 7.2e-171 604.7 586 56.7
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 9.4e-171 604.4 585 60.5
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 2.7e-170 602.8 624 54.3
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 4.7e-170 602.1 591 54.8
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 4.7e-170 602.1 586 54.4
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.8e-169 600.1 589 53.5
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 2.3e-169 599.7 592 56.9
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 6.7e-169 598.2 590 53.6
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 1.2e-168 597.4 587 55.4
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.3e-167 594.0 586 57.3
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 2.2e-167 593.2 633 52.8
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 6.3e-167 591.7 590 59.3
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.8e-166 590.1 589 55.2
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 3.1e-166 589.3 574 57.3
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 3.1e-166 589.3 593 55.5
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 3.1e-166 589.3 588 54.9
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 5.3e-166 588.6 598 52.5
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 1.2e-165 587.4 596 54.4
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.6e-165 587.0 634 51.9
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 1.6e-165 587.0 590 54.9
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 1.6e-165 587.0 592 53.0
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 2.7e-165 586.3 605 51.9
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 4.5e-165 585.5 594 53.9
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 4.5e-165 585.5 633 52.1
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 7.7e-165 584.7 619 52.0
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 1.3e-164 583.9 585 54.7
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.7e-164 583.6 584 52.9
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 1.7e-164 583.6 584 58.4
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.7e-164 583.6 587 52.5
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.8e-164 582.4 591 55.5
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 1.5e-163 580.5 610 56.7
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 1.9e-163 580.1 591 53.8
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 3.2e-163 579.3 590 53.6
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 7.2e-163 578.2 590 53.6
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 7.2e-163 578.2 634 51.7
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 9.4e-163 577.8 589 52.3
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 1.6e-162 577.0 653 52.4
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 4.7e-162 575.5 596 51.8
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 6.1e-162 575.1 634 51.7
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.4e-161 573.9 594 56.6
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 8.8e-161 571.2 589 52.8
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 5.7e-160 568.5 599 53.6
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 2.8e-159 566.2 592 53.9
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 4.8e-159 565.5 553 52.4
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 1.4e-158 563.9 587 56.9
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 9.1e-158 561.2 583 56.6
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 2.0e-157 560.1 591 53.1
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 1.2e-154 550.8 564 54.1
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 2.1e-154 550.1 585 51.5
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 4.7e-154 548.9 587 52.5
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 8.0e-154 548.1 589 49.9
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.0e-152 543.5 473 58.8
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 3.1e-150 536.2 514 55.6
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 5.4e-150 535.4 595 50.6
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 1.2e-149 534.3 552 53.1
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 4.5e-149 532.3 547 52.8
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 3.8e-148 529.3 586 51.4
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 4.3e-147 525.8 589 50.1
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 4.3e-147 525.8 470 57.7
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 1.4e-145 520.8 556 51.6
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 1.4e-145 520.8 592 49.3
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 1.8e-145 520.4 556 51.6
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 9.8e-144 514.6 553 51.5
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 9.8e-144 514.6 586 49.7
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 2.9e-143 513.1 586 50.5
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 1.6e-141 507.3 623 47.2
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 6.0e-141 505.4 596 49.7
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 6.6e-140 501.9 587 49.4
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 2.2e-135 486.9 587 48.2
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 6.0e-133 478.8 581 46.1
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 8.9e-129 464.9 615 48.0
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 1.0e-124 451.4 618 43.0
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 1.0e-124 451.4 407 60.2
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 3.9e-124 449.5 496 51.8
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 1.2e-120 438.0 455 52.7
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 3.0e-116 423.3 368 60.1
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 1.2e-112 411.4 602 43.4
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 7.1e-110 402.1 673 38.9
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.8e-105 387.5 360 56.1
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 3.3e-99 366.7 574 40.6
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 6.0e-93 345.9 563 39.3
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 6.7e-92 342.4 599 37.1
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 8.7e-92 342.0 579 37.5
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 2.1e-90 337.4 556 37.1
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 7.1e-86 322.4 521 38.6
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 2.1e-85 320.9 549 36.1
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 3.9e-84 316.6 522 41.6
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.1e-83 315.1 600 36.0
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 6.3e-82 309.3 407 43.7
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.8e-81 307.8 594 35.2
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 5.0e-79 299.7 540 37.4
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 1.4e-78 298.1 371 43.1
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 7.9e-77 292.4 607 33.3
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 3.9e-76 290.0 682 35.0
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 6.1e-69 266.2 451 39.9
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 1.0e-68 265.4 694 30.4
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 1.7e-63 248.1 674 30.6
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.9e-63 247.3 479 34.0
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 5.7e-51 206.5 329 36.2
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 4.8e-50 203.4 239 51.9
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.1e-49 202.2 109 86.2
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 2.7e-48 197.6 152 69.1
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 8.0e-45 186.0 156 66.0
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.5e-30 138.7 102 66.7
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.7e-26 125.2 107 61.7
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.9e-18 97.8 109 52.3
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 1.2e-16 92.4 136 41.9
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 1.6e-13 82.0 169 36.1
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 2.0e-11 75.1 173 32.9
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 1.5e-06 58.9 54 55.6
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 5.6e-06 57.0 47 57.4


User provided reference genes

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