Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 2139.4 1089 100.0
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1742.2 1089 81.5
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1703.3 1088 78.7
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1696.4 1092 77.6
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1696.4 1091 77.3
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1692.6 1072 80.1
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1684.1 1090 77.1
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1681.8 1090 76.8
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1678.3 1092 76.9
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1674.4 1094 77.1
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1671.0 1118 75.4
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1662.5 1101 75.7
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1662.1 1079 76.6
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1659.8 1084 77.3
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1658.7 1215 72.0
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1644.0 1080 75.1
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1644.0 1084 75.6
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1633.6 1083 76.1
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1633.6 1082 76.2
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1633.6 1085 74.7
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1632.5 1082 76.0
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1628.2 1091 75.4
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1626.7 1087 74.5
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1623.6 1083 74.4
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1622.1 1088 74.7
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1619.0 1082 75.8
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1616.7 1109 73.6
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1615.5 1076 75.2
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1614.0 1082 75.5
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1612.8 1082 75.5
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1609.7 1086 74.0
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1602.8 1088 74.0
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1600.9 1085 74.3
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1598.9 1079 73.8
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1598.2 1079 73.7
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1597.0 1083 74.8
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1593.6 1085 74.2
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1593.2 1090 73.9
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1592.4 1085 74.2
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1590.5 1089 73.0
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1590.1 1088 73.8
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1589.7 1090 73.1
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1588.9 1088 73.9
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1588.9 1087 73.0
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1587.4 1087 74.1
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1587.0 1083 74.1
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1587.0 1085 73.5
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1585.9 1103 72.8
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1582.8 1080 72.5
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1579.3 1081 73.3
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1578.5 1082 73.6
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1577.8 1088 73.7
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1577.4 1089 72.9
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1576.2 1083 73.7
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1575.5 1088 73.9
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1574.7 1084 73.8
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1572.8 1086 73.5
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1571.6 1086 73.6
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1568.9 1087 72.7
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1566.6 1089 71.9
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1565.1 1116 71.6
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1565.1 1082 72.8
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1562.7 1083 72.9
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1557.3 1083 72.3
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1555.4 1091 71.9
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1551.6 1086 72.4
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1549.6 1086 72.0
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1548.5 1089 72.5
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1539.2 1093 71.4
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1531.9 1083 71.8
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1527.3 1080 72.2
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1526.5 1078 71.3
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1523.8 1085 71.7
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1520.4 1092 72.0
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1517.3 1093 70.1
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1516.1 1088 70.9
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1507.7 1083 71.7
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1506.1 1083 70.2
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1498.8 1087 69.7
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1491.9 1076 71.0
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1486.9 1091 70.8
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1480.7 974 76.3
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1438.3 944 75.4
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 1426.8 1090 67.2
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1424.1 1142 65.3
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 1423.3 1091 66.6
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1411.4 1089 68.0
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 1365.5 1090 63.5
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1349.3 1087 62.8
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1341.3 957 71.1
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1323.1 1090 65.6
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1306.6 1205 56.9
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 0.0e+00 1238.0 1078 60.0
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 0.0e+00 1229.5 758 79.7
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1213.0 980 65.9
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 0.0e+00 1206.0 760 78.4
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1109.0 754 72.1
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1090.9 1019 61.0
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1077.8 718 74.1
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 2.6e-291 1005.7 1081 49.4
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 1.5e-278 963.4 1079 50.0
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 7.5e-254 881.3 625 71.2
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 2.0e-235 820.1 720 58.6
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 7.8e-235 818.1 540 76.7
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 1.9e-228 797.0 1029 44.2
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 9.9e-206 721.5 516 71.1
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 7.1e-204 715.3 656 58.7
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 1.4e-188 664.5 1512 32.1
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 1.7e-173 614.4 403 77.7
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 1.8e-130 471.5 345 71.0
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 1.8e-90 338.6 203 83.7
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 2.9e-56 224.9 163 68.1
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 1.6e-41 176.0 100 86.0
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 2.9e-24 118.6 59 88.1
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 2.0e-20 105.9 54 87.0
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 3.8e-16 91.7 65 58.5
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.3e-13 82.4 49 73.5
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.3e-13 82.4 49 73.5
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 1.7e-11 76.3 40 85.0
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 4.6e-09 68.2 209 27.8
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 1.0e-08 67.0 73 49.3
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 1.7e-08 66.2 73 49.3
SEGI_36326 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 2.3e-08 65.9 90 43.3


User provided reference genes

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