Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1735.3 876 100.0
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1614.4 875 92.6
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1613.6 876 92.5
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1607.0 875 91.4
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1603.2 876 91.8
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1594.3 875 90.5
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1592.8 875 90.5
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1585.1 876 90.1
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1585.1 875 90.3
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1583.9 875 89.8
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1578.5 874 89.9
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1578.1 874 89.8
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1578.1 875 89.5
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1575.1 874 89.8
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1574.7 885 88.4
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1569.3 875 89.4
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1568.9 875 89.7
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1567.7 876 88.5
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1567.7 873 89.1
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1566.6 904 87.2
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1564.3 875 88.7
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1560.8 874 88.3
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1560.0 875 89.0
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1558.9 875 89.1
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1558.5 887 87.9
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1558.5 874 89.0
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1557.3 875 88.6
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1557.0 891 87.2
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1555.8 875 88.8
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1555.0 875 88.9
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1554.7 876 87.1
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1554.3 877 88.1
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1553.1 902 86.5
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1548.1 872 88.0
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1547.3 875 88.6
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1545.4 875 87.8
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1542.7 873 87.7
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1541.2 875 88.0
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1540.4 875 88.0
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1536.9 874 87.6
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1535.0 871 86.5
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1532.3 873 87.5
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1531.9 878 87.2
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1531.5 873 86.7
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1530.0 874 86.2
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1529.2 874 87.5
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1528.5 872 86.9
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1527.3 875 86.6
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1523.5 872 86.9
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1523.5 875 86.6
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1523.1 856 88.4
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1522.7 875 86.9
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1521.1 875 85.5
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1520.4 875 86.4
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1520.4 882 85.9
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1520.4 882 85.9
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1520.4 879 87.0
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1518.1 875 86.3
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1515.4 860 87.7
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1515.0 882 85.7
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1513.0 873 86.0
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1511.1 877 86.7
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1510.4 874 85.5
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1510.4 844 89.1
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1508.8 874 85.2
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1508.8 882 85.4
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1507.3 876 85.2
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1505.7 856 87.7
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1505.0 873 84.8
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1502.3 871 85.3
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1501.9 873 84.1
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1500.7 871 83.9
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1497.6 871 83.9
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1497.3 874 84.7
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1496.5 858 86.2
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1496.1 858 86.5
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1494.9 841 88.5
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1494.2 835 89.0
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1493.0 875 84.2
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1492.6 854 86.9
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1485.7 875 84.2
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1483.4 871 83.7
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1482.2 875 83.5
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1481.1 873 84.0
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1477.6 875 83.9
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1476.5 852 86.5
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1474.5 872 83.7
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1472.2 921 81.8
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1468.8 872 83.0
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1468.4 875 82.6
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1468.4 875 83.0
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1467.6 875 82.7
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1467.2 872 82.8
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1467.2 872 82.8
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1467.2 872 82.8
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1466.8 875 82.6
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1466.1 890 81.6
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1465.3 974 78.4
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1464.5 875 82.5
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1463.0 875 84.1
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1462.2 873 82.6
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1457.2 879 82.1
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1451.8 872 82.0
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1450.3 872 81.7
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1448.7 861 82.5
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1440.2 900 80.3
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1439.1 864 85.0
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1437.6 858 82.8
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1435.2 844 83.2
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1419.1 882 81.9
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1416.0 873 82.4
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1415.2 860 82.7
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1411.0 852 81.6
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1406.3 774 89.8
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1397.9 871 78.3
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1395.2 873 77.7
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1385.9 872 77.6
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1380.2 872 77.2
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1379.8 877 80.4
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1369.8 874 79.6
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1366.7 823 81.5
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1363.2 803 85.3
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1361.7 803 83.1
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1344.7 900 76.0
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1329.3 884 79.0
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1326.2 878 78.7
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1297.3 876 76.4
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1284.6 718 88.4
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1212.2 777 78.0
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1210.7 727 81.4
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1202.6 856 69.3
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1194.1 874 68.2
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1194.1 874 70.4
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1105.5 633 85.5
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 5.2e-306 1054.3 581 89.2
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 6.8e-298 1027.3 882 59.0
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 1.0e-269 933.7 550 84.2
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 1.1e-255 887.1 909 53.5
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.5e-217 758.8 452 83.6
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 6.5e-216 755.0 428 87.6
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 9.4e-215 751.1 505 77.2
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.9e-192 676.4 451 76.9
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 3.7e-187 659.4 396 82.6
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 3.1e-186 656.4 744 50.1
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 4.0e-165 586.3 467 67.2
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 5.8e-164 582.4 338 85.2
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 1.4e-138 498.0 293 84.0
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 7.1e-138 495.7 391 66.5
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.5e-111 407.5 423 54.6
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 6.3e-102 376.3 319 64.3
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 3.7e-94 350.5 232 75.9
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 8.0e-89 332.8 264 66.3
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 7.0e-69 266.5 227 64.3
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 6.4e-62 243.4 216 60.2
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 5.6e-58 230.3 150 77.3
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 1.2e-49 202.6 119 80.7
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 3.9e-43 181.0 268 42.9
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 6.8e-40 170.2 115 72.2
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 1.8e-32 145.6 87 80.5
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 5.8e-31 140.6 91 73.6
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 8.4e-30 136.7 83 78.3
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 2.1e-28 132.1 79 82.3
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 2.1e-25 122.1 449 27.6
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 2.9e-22 111.7 95 63.2
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 2.9e-22 111.7 130 53.1
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 8.1e-17 93.6 56 73.2
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 1.2e-15 89.7 60 68.3
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 6.0e-12 77.4 57 70.2
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 1.8e-11 75.9 51 72.5
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 2.3e-11 75.5 49 75.5
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 5.7e-10 70.9 119 41.2
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 3.7e-09 68.2 43 72.1
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 6.2e-09 67.4 46 71.7
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 8.2e-09 67.0 43 72.1
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 1.3e-06 59.7 76 47.4


User provided reference genes

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