Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033549 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 8.2e-91 337.0 169 100.0
CSS0028889 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.0e-65 252.7 226 64.6
CSS0001709 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.8e-64 248.4 223 64.6
CSS0002085 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 6.1e-62 241.1 223 62.8
QL11p012061 Quercus lobata HOM05D003515 ORTHO05D004347 3.0e-61 238.8 224 62.5
Dinv07004 Davidia involucrata HOM05D003515 ORTHO05D004347 1.1e-60 236.9 217 62.7
RhsimUnG0176900 Rhododendron simsii HOM05D003515 ORTHO05D004347 2.6e-60 235.7 224 61.2
Hma1.2p1_0088F.1_g045246 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 5.7e-60 234.6 217 62.2
vmacro03558 Vaccinium macrocarpon HOM05D003515 ORTHO05D004347 7.4e-60 234.2 223 61.0
Rhsim13G0134000 Rhododendron simsii HOM05D003515 ORTHO05D004347 1.7e-59 233.0 223 61.0
Hma1.2p1_0088F.1_g045243 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 2.8e-59 232.3 223 60.5
Lj1C1149T14 Lonicera japonica HOM05D003515 ORTHO05D004347 6.3e-59 231.1 223 60.5
Manes.03G074900 Manihot esculenta HOM05D003515 ORTHO05D004347 1.4e-58 229.9 224 59.8
COL.COLO4_16231 Corchorus olitorius HOM05D003515 ORTHO05D004347 2.4e-58 229.2 224 59.4
Haze_05267 Corylus avellana HOM05D003515 ORTHO05D004347 2.4e-58 229.2 224 59.8
Cfa001125 Carpinus fangiana HOM05D003515 ORTHO05D004347 4.1e-58 228.4 224 59.8
Ciclev10014398m.g Citrus clementina HOM05D003515 ORTHO05D004347 4.1e-58 228.4 224 59.4
GSVIVG01012151001 Vitis vinifera HOM05D003515 ORTHO05D004347 4.1e-58 228.4 222 60.4
Cc09_g05170 Coffea canephora HOM05D003515 ORTHO05D004347 7.0e-58 227.6 222 59.5
TWI63G0015 Tripterygium wilfordii HOM05D003515 ORTHO05D004347 1.6e-57 226.5 223 59.2
ClCG01G025730 Citrullus lanatus HOM05D003515 ORTHO05D004347 2.6e-57 225.7 223 58.3
Nn7g38343 Nelumbo nucifera HOM05D003515 ORTHO05D004347 2.6e-57 225.7 222 59.0
Prupe.4G118000 Prunus persica HOM05D003515 ORTHO05D004347 2.6e-57 225.7 224 58.9
TAR624G0550 Trochodendron aralioides HOM05D003515 ORTHO05D004347 4.5e-57 224.9 223 59.6
CSS0046591 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 7.7e-57 224.2 298 49.0
Gohir.D05G247100 Gossypium hirsutum HOM05D003515 ORTHO05D004347 7.7e-57 224.2 224 58.0
Gorai.009G257800 Gossypium raimondii HOM05D003515 ORTHO05D004347 7.7e-57 224.2 224 58.0
Thecc.02G003700 Theobroma cacao HOM05D003515 ORTHO05D004347 7.7e-57 224.2 224 58.5
CiPaw.10G105500 Carya illinoinensis HOM05D003515 ORTHO05D004347 1.0e-56 223.8 224 58.5
Gohir.A05G245600 Gossypium hirsutum HOM05D003515 ORTHO05D004347 1.0e-56 223.8 224 57.6
Migut.M02011 Erythranthe guttata HOM05D003515 ORTHO05D004347 1.7e-56 223.0 223 57.8
MD10G1227200 Malus domestica HOM05D003515 ORTHO05D004347 1.7e-56 223.0 224 58.9
Oeu008987.4 Olea europaea HOM05D003515 ORTHO05D004347 2.2e-56 222.6 226 56.6
Duzib132G1190 Durio zibethinus HOM05D003515 ORTHO05D004347 2.9e-56 222.2 224 58.5
Solyc01g034150.4 Solanum lycopersicum HOM05D003515 ORTHO05D004347 2.9e-56 222.2 223 58.3
Sopen01g017810 Solanum pennellii HOM05D003515 ORTHO05D004347 2.9e-56 222.2 223 57.8
CSS0031993 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.8e-56 221.9 201 65.2
CsaV3_6G052970 Cucumis sativus L. HOM05D003515 ORTHO05D004347 5.0e-56 221.5 223 57.8
FAN16G1075 Fragaria x ananassa HOM05D003515 ORTHO05D004347 5.0e-56 221.5 224 58.0
FAN21G1878 Fragaria x ananassa HOM05D003515 ORTHO05D004347 5.0e-56 221.5 224 58.0
Nitab4.5_0003190g0020 Nicotiana tabacum HOM05D003515 ORTHO05D004347 5.0e-56 221.5 222 57.7
AUR62040332 Chenopodium quinoa HOM05D003515 ORTHO05D004347 6.5e-56 221.1 220 58.6
EL10Ac7g17242 Beta vulgaris HOM05D003515 ORTHO05D004347 8.5e-56 220.7 223 57.8
HanXRQChr14g0439721 Helianthus annuus HOM05D003515 ORTHO05D004347 8.5e-56 220.7 223 58.3
Lsat_1_v5_gn_2_60141 Lactuca sativa HOM05D003515 ORTHO05D004347 8.5e-56 220.7 224 56.7
RcHm_v2.0_Chr5g0021201 Rosa chinensis HOM05D003515 ORTHO05D004347 8.5e-56 220.7 224 58.5
PGSC0003DMG401001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 8.5e-56 220.7 223 57.8
ECA238G0584 Erigeron canadensis HOM05D003515 ORTHO05D004347 1.9e-55 219.5 223 57.8
Medtr4g094755 Medicago truncatula HOM05D003515 ORTHO05D004347 1.9e-55 219.5 224 58.5
Nitab4.5_0000254g0140 Nicotiana tabacum HOM05D003515 ORTHO05D004347 3.2e-55 218.8 222 57.7
Sabra03G0110800 Salix brachista HOM05D003515 ORTHO05D004347 3.2e-55 218.8 224 57.6
FAN11G3814 Fragaria x ananassa HOM05D003515 ORTHO05D004347 5.5e-55 218.0 224 57.6
Ca_18232_v3 Cicer arietinum L. HOM05D003515 ORTHO05D004347 7.2e-55 217.6 224 58.0
CANSAT35G1862 Cannabis sativa HOM05D003515 ORTHO05D004347 9.4e-55 217.2 224 57.1
Aqoxy2G04030 Aquilegia oxysepala HOM05D003515 ORTHO05D004347 1.2e-54 216.9 223 55.6
CAN.G391.1 Capsicum annuum HOM05D003515 ORTHO05D004347 1.6e-54 216.5 223 56.5
AL8G14790 Arabidopsis lyrata HOM05D003515 ORTHO05D004347 2.1e-54 216.1 224 56.2
PGR004G1774 Punica granatum HOM05D003515 ORTHO05D004347 2.7e-54 215.7 225 56.0
CSS0015899 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.6e-54 215.3 207 62.8
PSO541G6439 Papaver somniferum HOM05D003515 ORTHO05D004347 3.6e-54 215.3 223 56.1
Peaxi162Scf00151g00110 Petunia axillaris HOM05D003515 ORTHO05D004347 3.6e-54 215.3 223 57.0
Psat7g087560 Pisum sativum HOM05D003515 ORTHO05D004347 3.6e-54 215.3 224 57.1
SEGI_02016 Sequoiadendron giganteum HOM05D003515 ORTHO05D004347 3.6e-54 215.3 220 55.5
unitig_748.g8071 Utricularia gibba HOM05D003515 ORTHO05D004347 8.0e-54 214.2 221 56.1
Atru.chr10.315 Acer truncatum HOM05D003515 ORTHO05D004347 1.8e-53 213.0 224 55.8
Carub.0008s0352 Capsella rubella HOM05D003515 ORTHO05D004347 1.8e-53 213.0 224 55.4
AT5G44740 Arabidopsis thaliana HOM05D003515 ORTHO05D004347 2.3e-53 212.6 224 55.4
SGA_v2.0_scaffold298G47708 Striga asiatica HOM05D003515 ORTHO05D004347 2.3e-53 212.6 242 54.1
arahy.Tifrunner.gnm1.ann1.NQ3I2Y Arachis hypogaea HOM05D003515 ORTHO05D004347 3.0e-53 212.2 224 56.2
arahy.Tifrunner.gnm1.ann1.ZWBN17 Arachis hypogaea HOM05D003515 ORTHO05D004347 3.0e-53 212.2 224 56.2
CARHR178160 Cardamine hirsuta HOM05D003515 ORTHO05D004347 5.2e-53 211.5 224 54.9
Lalb_Chr13g0293411 Lupinus albus HOM05D003515 ORTHO05D004347 5.2e-53 211.5 224 55.8
Sp2g09580 Schrenkiella parvula HOM05D003515 ORTHO05D004347 5.2e-53 211.5 224 54.9
BraA06t27567Z Brassica rapa HOM05D003515 ORTHO05D004347 1.2e-52 210.3 227 54.6
AUR62037879 Chenopodium quinoa HOM05D003515 ORTHO05D004347 2.0e-52 209.5 258 50.8
Lj4g0010619 Lotus japonicus HOM05D003515 ORTHO05D004347 2.0e-52 209.5 224 55.8
Os01g0757800 Oryza sativa ssp. japonica HOM05D003515 ORTHO05D004347 2.0e-52 209.5 220 54.5
HPP92_014201 Vanilla planifolia HOM05D003515 ORTHO05D004347 2.0e-52 209.5 220 55.0
HPP92_026459 Vanilla planifolia HOM05D003515 ORTHO05D004347 2.0e-52 209.5 220 55.0
Thhalv10000807m.g Eutrema salsugineum HOM05D003515 ORTHO05D004347 2.6e-52 209.1 224 54.9
VMungo0251G3194 Vigna mungo HOM05D003515 ORTHO05D004347 2.6e-52 209.1 224 55.4
ATR0763G272 Amborella trichopoda HOM05D003515 ORTHO05D004347 4.4e-52 208.4 223 53.8
DCAR_007777 Daucus carota HOM05D003515 ORTHO05D004347 5.7e-52 208.0 263 49.0
Eucgr.D00012 Eucalyptus grandis HOM05D003515 ORTHO05D004347 5.7e-52 208.0 224 54.9
RcHm_v2.0_Chr5g0021111 Rosa chinensis HOM05D003515 ORTHO05D004347 5.7e-52 208.0 227 55.5
Sed0024374 Sechium edule HOM05D003515 ORTHO05D004347 7.5e-52 207.6 223 54.3
THA.LOC104812921 Tarenaya hassleriana HOM05D003515 ORTHO05D004347 7.5e-52 207.6 224 54.0
BcaNung07103 Brassica carinata HOM05D003515 ORTHO05D004347 8.3e-51 204.1 224 53.6
A06p46940 Brassica napus HOM05D003515 ORTHO05D004347 1.1e-50 203.8 225 52.4
Phvul.002G188000 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 1.1e-50 203.8 224 53.6
Glyma.08G088900 Glycine max HOM05D003515 ORTHO05D004347 1.4e-50 203.4 224 54.0
Aa31LG9G8430 Aethionema arabicum HOM05D003515 ORTHO05D004347 1.8e-50 203.0 224 54.0
BolC7t43303H Brassica oleracea HOM05D003515 ORTHO05D004347 1.8e-50 203.0 225 52.4
C07p27710 Brassica napus HOM05D003515 ORTHO05D004347 3.1e-50 202.2 225 52.4
BcaNung06821 Brassica carinata HOM05D003515 ORTHO05D004347 2.2e-48 196.1 228 50.9
SMO118G0165 Selaginella moellendorffii HOM05D003515 ORTHO05D004347 4.0e-45 185.3 220 49.1
AagrBONN_evm.TU.Sc2ySwM_228.4437 Anthoceros agrestis HOM05D003515 ORTHO05D004347 1.2e-44 183.7 222 48.6
CBR_g30567 Chara braunii HOM05D003515 ORTHO05D004347 2.0e-44 183.0 213 50.2
RcHm_v2.0_Chr4g0406921 Rosa chinensis HOM05D003515 ORTHO05D004347 2.6e-44 182.6 191 56.5
Pp3c8_17250 Physcomitrium patens HOM05D003515 ORTHO05D004347 5.7e-44 181.4 218 50.0
Mapoly0100s0031 Marchantia polymorpha HOM05D003515 ORTHO05D004347 6.6e-40 167.9 218 45.9
Cpa.g.sc30.112 Carica papaya HOM05D003515 ORTHO05D004347 3.3e-39 165.6 117 74.4
Ah.15g091880 Amaranthus hybridus HOM05D003515 ORTHO05D004347 4.2e-39 165.2 173 57.8
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 2.1e-38 162.9 227 48.0
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 1.4e-37 160.2 115 74.8
MSTRG.2877 Avicennia marina HOM05D003515 ORTHO05D004347 4.4e-36 155.2 117 70.9
CSS0006685 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.3e-35 153.7 131 66.4
MELO3C007012.2 Cucumis melo HOM05D003515 ORTHO05D004347 8.3e-35 151.0 181 51.4
HanXRQChr14g0439691 Helianthus annuus HOM05D003515 ORTHO05D004347 5.4e-34 148.3 110 72.7
SHI28054 Sapria himalayana HOM05D003515 ORTHO05D004347 3.9e-32 142.1 120 65.8
CSS0015745 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.3e-31 139.0 152 56.6
Zm00001eb203100 Zea mays HOM05D003515 ORTHO05D004347 4.3e-31 138.7 182 47.8
Zm00001eb191750 Zea mays HOM05D003515 ORTHO05D004347 7.3e-31 137.9 181 47.5
Zm00001eb225590 Zea mays HOM05D003515 ORTHO05D004347 7.3e-31 137.9 181 47.5
Zm00001eb303570 Zea mays HOM05D003515 ORTHO05D004347 1.6e-30 136.7 182 47.3
Zm00001eb388450 Zea mays HOM05D003515 ORTHO05D004347 1.6e-30 136.7 182 47.3
Zm00001eb440130 Zea mays HOM05D003515 ORTHO05D004347 1.6e-30 136.7 182 47.3
Zm00001eb441390 Zea mays HOM05D003515 ORTHO05D004347 1.6e-30 136.7 182 47.3
Zm00001eb441960 Zea mays HOM05D003515 ORTHO05D004347 1.6e-30 136.7 182 47.3
CDE06G2844 Ceratophyllum demersum HOM05D003515 ORTHO05D004363 6.8e-29 131.3 164 48.2
Zm00001eb070690 Zea mays HOM05D003515 ORTHO05D004347 6.8e-29 131.3 179 46.4
Psat7g087520 Pisum sativum HOM05D003515 ORTHO05D004347 4.6e-25 118.6 108 62.0
CDE06G0434 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 1.0e-24 117.5 171 43.9
Zm00001eb277800 Zea mays HOM05D003515 ORTHO05D004347 1.6e-22 110.2 148 45.3
Zm00001eb031780 Zea mays HOM05D003515 ORTHO05D004347 4.7e-22 108.6 148 45.3
CDE06G0149 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 2.3e-21 106.3 61 85.2
Cre12.g524150 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 3.5e-17 92.4 135 43.7
CSS0032916 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 7.8e-17 91.3 98 55.1
CSS0046652 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.5e-15 87.0 66 71.2
PRCOL_00006902 Prasinoderma coloniale HOM05D003515 ORTHO05D004347 1.9e-15 86.7 275 28.7
FvH4_3g13010 Fragaria vesca HOM05D003515 ORTHO05D004347 4.3e-15 85.5 72 63.9
Zm00001eb152650 Zea mays HOM05D003515 ORTHO05D004347 5.6e-15 85.1 72 61.1
Zm00001eb409210 Zea mays HOM05D003515 ORTHO05D004347 5.6e-15 85.1 72 61.1
SHI28055 Sapria himalayana HOM05D003515 ORTHO05D004347 4.7e-14 82.0 67 65.7
TPR.G22047 Trifolium pratense HOM05D003515 ORTHO05D004347 4.7e-14 82.0 67 64.2
Sc05g0004760 Simmondsia chinensis HOM05D003515 ORTHO05D004347 1.4e-13 80.5 68 63.2
CSS0007738 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 6.8e-13 78.2 69 69.6
Zm00001eb371460 Zea mays HOM05D003515 ORTHO05D004347 8.9e-13 77.8 71 60.6
Thecc.02G117100 Theobroma cacao HOM05D002857 ORTHO05D007919 6.4e-11 71.6 175 34.3
MCO03G362 Micromonas commoda HOM05D003515 ORTHO05D004347 8.3e-11 71.2 191 35.1
Cc02_g19870 Coffea canephora HOM05D002857 ORTHO05D007919 1.4e-10 70.5 165 34.5
Gohir.A03G182500 Gossypium hirsutum HOM05D002857 ORTHO05D007919 1.4e-10 70.5 172 32.6
Gohir.D02G204100 Gossypium hirsutum HOM05D002857 ORTHO05D007919 1.9e-10 70.1 172 33.1
Gorai.005G231400 Gossypium raimondii HOM05D002857 ORTHO05D007919 3.2e-10 69.3 172 33.1
DCAR_021953 Daucus carota HOM05D002857 ORTHO05D007919 4.1e-10 68.9 175 33.1
CARHR040030 Cardamine hirsuta HOM05D002857 ORTHO05D007919 2.7e-09 66.2 174 33.3
Migut.B00487 Erythranthe guttata HOM05D002857 ORTHO05D007919 2.7e-09 66.2 175 32.6
Medtr5g005030 Medicago truncatula HOM05D002857 ORTHO05D007919 3.5e-09 65.9 172 30.8
Potri.003G152600 Populus trichocarpa HOM05D003515 ORTHO05D004347 6.0e-09 65.1 53 64.2
SMO367G0229 Selaginella moellendorffii HOM05D003515 ORTHO05D004347 1.0e-08 64.3 187 26.2
Mapoly0226s0007 Marchantia polymorpha HOM05D003515 ORTHO05D004347 3.9e-08 62.4 215 27.9
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 6.6e-08 61.6 166 30.1
TAR381G0324 Trochodendron aralioides HOM05D002857 ORTHO05D007919 1.5e-07 60.5 174 31.0
Mapoly0044s0119 Marchantia polymorpha HOM05D003515 ORTHO05D004347 1.9e-07 60.1 206 26.2
Pp3c14_23660 Physcomitrium patens HOM05D003515 ORTHO05D004347 2.5e-07 59.7 221 27.1
PRCOL_00005783 Prasinoderma coloniale HOM05D003515 ORTHO05D004347 1.2e-06 57.4 218 27.1
QL11p033063 Quercus lobata HOM05D004852 ORTHO05D006128 1.2e-06 57.4 170 27.6


User provided reference genes

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