Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033547 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 5.8e-65 250.8 127 100.0
CSS0047821 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 7.1e-63 243.8 125 99.2
Actinidia29350 Actinidia chinensis HOM05D008163 ORTHO05D010305 2.3e-37 159.1 125 68.8
Prupe.7G030100 Prunus persica HOM05D008163 ORTHO05D010305 1.8e-26 122.9 87 72.4
Prupe.4G282300 Prunus persica HOM05D008163 ORTHO05D010305 4.0e-26 121.7 87 72.4
MD12G1044600 Malus domestica HOM05D008163 ORTHO05D010305 2.6e-25 119.0 87 69.0
MD15G1374400 Malus domestica HOM05D008163 ORTHO05D010305 4.5e-25 118.2 87 67.8
Manes.09G036100 Manihot esculenta HOM05D008163 ORTHO05D010305 1.1e-23 113.6 86 65.1
SalBow1G5351 Salvia bowleyana HOM05D008163 ORTHO05D010305 4.2e-23 111.7 89 66.3
SalBow1G7817 Salvia bowleyana HOM05D008163 ORTHO05D010305 4.2e-23 111.7 89 66.3
RcHm_v2.0_Chr1g0321141 Rosa chinensis HOM05D008163 ORTHO05D010305 5.5e-23 111.3 90 64.4
Rhsim06G0223600 Rhododendron simsii HOM05D000504 ORTHO05D000403 1.2e-22 110.2 74 68.9
FAN03G0237 Fragaria x ananassa HOM05D008163 ORTHO05D010305 2.1e-22 109.4 96 61.5
Hma1.2p1_0136F.1_g062003 Hydrangea macrophylla HOM05D008163 ORTHO05D010305 3.5e-22 108.6 89 65.2
FAN06G4466 Fragaria x ananassa HOM05D008163 ORTHO05D010305 4.6e-22 108.2 90 63.3
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 1.8e-21 106.3 88 59.1
FvH4_7g02510 Fragaria vesca HOM05D008163 ORTHO05D010305 1.8e-21 106.3 90 62.2
SHI03043 Sapria himalayana HOM05D008163 ORTHO05D010305 1.8e-21 106.3 90 61.1
RcHm_v2.0_Chr2g0149911 Rosa chinensis HOM05D008163 ORTHO05D010305 2.3e-21 105.9 96 60.4
Potri.007G072900 Populus trichocarpa HOM05D008163 ORTHO05D010305 3.0e-21 105.5 87 59.8
Sabra07G0061500 Salix brachista HOM05D008163 ORTHO05D010305 3.0e-21 105.5 87 62.1
Sabra15G0022500 Salix brachista HOM05D008163 ORTHO05D010305 5.1e-21 104.8 87 60.9
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 1.5e-20 103.2 120 46.7
Carub.0003s2247 Capsella rubella HOM05D008163 ORTHO05D010305 5.7e-20 101.3 79 64.6
Solyc11g063600.3 Solanum lycopersicum HOM05D008163 ORTHO05D010305 9.7e-20 100.5 89 62.9
CARHR098200 Cardamine hirsuta HOM05D008163 ORTHO05D010305 1.3e-19 100.1 79 64.6
AL3G36570 Arabidopsis lyrata HOM05D008163 ORTHO05D010305 1.6e-19 99.8 79 63.3
AT3G22300 Arabidopsis thaliana HOM05D008163 ORTHO05D010305 1.6e-19 99.8 79 63.3
Prupe.7G029400 Prunus persica HOM05D008163 ORTHO05D010305 2.8e-19 99.0 81 64.2
Thhalv10021368m.g Eutrema salsugineum HOM05D008163 ORTHO05D010305 3.7e-19 98.6 79 62.0
Aa31LG8G8870 Aethionema arabicum HOM05D008163 ORTHO05D010305 6.3e-19 97.8 78 62.8
Os12g0517200 Oryza sativa ssp. japonica HOM05D008163 ORTHO05D010305 1.4e-18 96.7 87 57.5
Sp3g20090 Schrenkiella parvula HOM05D008163 ORTHO05D010305 1.4e-18 96.7 79 62.0
BcaC01g03452 Brassica carinata HOM05D008163 ORTHO05D010305 1.8e-18 96.3 79 60.8
A03p42710 Brassica napus HOM05D008163 ORTHO05D010305 1.8e-18 96.3 79 60.8
C03p52430 Brassica napus HOM05D008163 ORTHO05D010305 1.8e-18 96.3 79 60.8
BolC3t17513H Brassica oleracea HOM05D008163 ORTHO05D010305 1.8e-18 96.3 79 60.8
BraA03t13418Z Brassica rapa HOM05D008163 ORTHO05D010305 1.8e-18 96.3 79 60.8
Hund21444 Selenicereus undatus HOM05D008163 ORTHO05D010305 2.4e-18 95.9 82 61.0
BcaB06g26334 Brassica carinata HOM05D008163 ORTHO05D010305 4.1e-18 95.1 79 60.8
A05p26470 Brassica napus HOM05D008163 ORTHO05D010305 4.1e-18 95.1 79 60.8
BraA05t21520Z Brassica rapa HOM05D008163 ORTHO05D010305 4.1e-18 95.1 79 60.8
BcaC05g28083 Brassica carinata HOM05D008163 ORTHO05D010305 1.5e-17 93.2 79 59.5
C05p41060 Brassica napus HOM05D008163 ORTHO05D010305 1.5e-17 93.2 79 59.5
BolC5t32848H Brassica oleracea HOM05D008163 ORTHO05D010305 1.5e-17 93.2 79 59.5
AUR62012772 Chenopodium quinoa HOM05D008163 ORTHO05D010305 3.8e-16 88.6 83 55.4
AUR62021886 Chenopodium quinoa HOM05D008163 ORTHO05D010305 3.8e-16 88.6 83 55.4
AUR62036216 Chenopodium quinoa HOM05D008163 ORTHO05D010305 6.5e-16 87.8 83 54.2
Zm00001eb215210 Zea mays HOM05D008163 ORTHO05D010305 6.5e-16 87.8 84 58.3
DCAR_027582 Daucus carota HOM05D008163 ORTHO05D010305 8.5e-16 87.4 79 53.2
Zm00001eb056700 Zea mays HOM05D008163 ORTHO05D010305 5.5e-15 84.7 84 56.0
EL10Ac8g20156 Beta vulgaris HOM05D008163 ORTHO05D010305 7.2e-15 84.3 70 60.0
PSO017G7110 Papaver somniferum HOM05D008163 ORTHO05D010305 1.6e-14 83.2 87 49.4
PSO170G4613 Papaver somniferum HOM05D008163 ORTHO05D010305 1.6e-14 83.2 87 49.4
SEGI_07019 Sequoiadendron giganteum HOM05D008163 ORTHO05D010305 2.1e-14 82.8 73 58.9
Ah.14g087810 Amaranthus hybridus HOM05D000967 ORTHO05D000796 1.5e-12 76.6 82 46.3
TPR.G20554 Trifolium pratense HOM05D008163 ORTHO05D010305 4.3e-12 75.1 61 63.9
Lalb_Chr00c21g0405831 Lupinus albus HOM05D008163 ORTHO05D010305 5.7e-12 74.7 61 63.9
Nn1g09991 Nelumbo nucifera HOM05D008163 ORTHO05D010305 5.7e-12 74.7 61 63.9
Nn1g10091 Nelumbo nucifera HOM05D008163 ORTHO05D010305 5.7e-12 74.7 61 63.9
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.3e-11 73.6 65 58.5
Nitab4.5_0000592g0150 Nicotiana tabacum HOM05D008163 ORTHO05D010305 4.8e-11 71.6 58 65.5
Nitab4.5_0000172g1360 Nicotiana tabacum HOM05D008163 ORTHO05D010305 4.1e-10 68.6 122 37.7
Nitab4.5_0001127g0310 Nicotiana tabacum HOM05D008163 ORTHO05D010305 6.9e-10 67.8 61 60.7
MD07G1062900 Malus domestica HOM05D008163 ORTHO05D010305 2.2e-08 62.8 55 54.5
Pp3c3_3090 Physcomitrium patens HOM05D008163 ORTHO05D010305 2.9e-08 62.4 81 39.5
FAN10G0940 Fragaria x ananassa HOM05D008163 ORTHO05D010305 6.5e-08 61.2 62 53.2
Glyma.17G185500 Glycine max HOM05D008163 ORTHO05D010305 2.1e-06 56.2 45 64.4


User provided reference genes

Program Settings