Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033542 Camellia sinensis var. sinensis HOM05D006621 ORTHO05D043305 1.3e-35 152.5 80 100.0
CSS0004967 Camellia sinensis var. sinensis HOM05D006621 ORTHO05D008425 2.6e-18 95.1 56 89.3
COL.COLO4_36135 Corchorus olitorius HOM05D006621 ORTHO05D008425 4.8e-17 90.9 56 85.7
Actinidia38574 Actinidia chinensis HOM05D006621 ORTHO05D008425 8.2e-17 90.1 54 87.0
Lju124A29T46 Lonicera japonica HOM05D006621 ORTHO05D008425 1.1e-16 89.7 54 88.9
Thecc.05G168600 Theobroma cacao HOM05D006621 ORTHO05D008425 1.1e-16 89.7 56 82.1
Prupe.7G073900 Prunus persica HOM05D006621 ORTHO05D008425 1.4e-16 89.4 56 85.7
Eucgr.K01826 Eucalyptus grandis HOM05D006621 ORTHO05D008425 1.8e-16 89.0 56 83.9
MSTRG.6466 Avicennia marina HOM05D006621 ORTHO05D008425 4.1e-16 87.8 53 86.8
Cfa016900 Carpinus fangiana HOM05D006621 ORTHO05D008425 4.1e-16 87.8 56 83.9
Duzib128G0108 Durio zibethinus HOM05D006621 ORTHO05D008425 4.1e-16 87.8 56 82.1
vmacro09106 Vaccinium macrocarpon HOM05D006621 ORTHO05D008425 4.1e-16 87.8 54 88.9
CANSAT64G2439 Cannabis sativa HOM05D006621 ORTHO05D008425 7.0e-16 87.0 54 87.0
FvH4_6g22670 Fragaria vesca HOM05D006621 ORTHO05D008425 7.0e-16 87.0 54 85.2
FAN02G3731 Fragaria x ananassa HOM05D006621 ORTHO05D008425 7.0e-16 87.0 54 85.2
FAN05G4150 Fragaria x ananassa HOM05D006621 ORTHO05D008425 7.0e-16 87.0 54 85.2
FAN09G2006 Fragaria x ananassa HOM05D006621 ORTHO05D008425 7.0e-16 87.0 54 85.2
FAN14G0291 Fragaria x ananassa HOM05D006621 ORTHO05D008425 7.0e-16 87.0 54 85.2
FAN14G1344 Fragaria x ananassa HOM05D006621 ORTHO05D008425 7.0e-16 87.0 54 85.2
QL07p023160 Quercus lobata HOM05D006621 ORTHO05D008425 7.0e-16 87.0 54 83.3
Eucgr.D02420 Eucalyptus grandis HOM05D006621 ORTHO05D008425 9.1e-16 86.7 56 82.1
Haze_19963 Corylus avellana HOM05D006621 ORTHO05D008425 1.2e-15 86.3 54 85.2
Manes.09G032200 Manihot esculenta HOM05D006621 ORTHO05D008425 1.2e-15 86.3 56 82.1
RcHm_v2.0_Chr3g0480241 Rosa chinensis HOM05D006621 ORTHO05D008425 1.2e-15 86.3 54 85.2
Dinv24092 Davidia involucrata HOM05D006621 ORTHO05D008425 1.6e-15 85.9 54 85.2
Glyma.02G176900 Glycine max HOM05D006621 ORTHO05D008425 1.6e-15 85.9 56 80.4
Gohir.A09G126800 Gossypium hirsutum HOM05D006621 ORTHO05D008425 2.0e-15 85.5 56 80.4
Gohir.D09G123264 Gossypium hirsutum HOM05D006621 ORTHO05D008425 2.0e-15 85.5 56 80.4
SalBow6G6334 Salvia bowleyana HOM05D006621 ORTHO05D008425 2.0e-15 85.5 56 80.4
Migut.J01819 Erythranthe guttata HOM05D006621 ORTHO05D008425 2.6e-15 85.1 54 83.3
Hma1.2p1_0005F.1_g004290 Hydrangea macrophylla HOM05D006621 ORTHO05D008425 3.5e-15 84.7 54 83.3
MD14G1060600 Malus domestica HOM05D006621 ORTHO05D008425 3.5e-15 84.7 54 85.2
Gorai.006G141700 Gossypium raimondii HOM05D006621 ORTHO05D008425 4.5e-15 84.3 56 78.6
Lalb_Chr21g0317041 Lupinus albus HOM05D006621 ORTHO05D008425 4.5e-15 84.3 54 81.5
Nn1g01946 Nelumbo nucifera HOM05D006621 ORTHO05D008425 4.5e-15 84.3 56 78.6
Ah.13g076080 Amaranthus hybridus HOM05D006621 ORTHO05D008425 7.7e-15 83.6 56 78.6
Ca_26117_v3 Cicer arietinum L. HOM05D006621 ORTHO05D008425 7.7e-15 83.6 54 81.5
VMungo0720G2363 Vigna mungo HOM05D006621 ORTHO05D008425 7.7e-15 83.6 56 76.8
Lsat_1_v5_gn_5_164180 Lactuca sativa HOM05D006621 ORTHO05D008425 1.0e-14 83.2 54 81.5
Medtr1g053520 Medicago truncatula HOM05D006621 ORTHO05D008425 1.0e-14 83.2 54 79.6
Phvul.007G257900 Phaseolus vulgaris HOM05D006621 ORTHO05D008425 1.0e-14 83.2 54 79.6
Rhsim04G0097900 Rhododendron simsii HOM05D006621 ORTHO05D008425 1.0e-14 83.2 54 85.2
Cc00_g14610 Coffea canephora HOM05D006621 ORTHO05D008425 1.3e-14 82.8 54 79.6
ECA248G1459 Erigeron canadensis HOM05D006621 ORTHO05D008425 1.3e-14 82.8 50 88.0
MD12G1060400 Malus domestica HOM05D006621 ORTHO05D008425 1.3e-14 82.8 54 81.5
PGR142G0547 Punica granatum HOM05D006621 ORTHO05D008425 1.3e-14 82.8 56 78.6
TAR636G2274 Trochodendron aralioides HOM05D006621 ORTHO05D008425 1.3e-14 82.8 56 80.4
arahy.Tifrunner.gnm1.ann1.G78CS5 Arachis hypogaea HOM05D006621 ORTHO05D008425 1.7e-14 82.4 54 79.6
arahy.Tifrunner.gnm1.ann1.ZJT11U Arachis hypogaea HOM05D006621 ORTHO05D008425 1.7e-14 82.4 54 79.6
AUR62024325 Chenopodium quinoa HOM05D006621 ORTHO05D008425 1.7e-14 82.4 56 75.0
Nitab4.5_0000016g0290 Nicotiana tabacum HOM05D006621 ORTHO05D008425 2.2e-14 82.0 56 78.6
GSVIVG01033523001 Vitis vinifera HOM05D006621 ORTHO05D008425 2.2e-14 82.0 54 81.5
Glyma.10G091600 Glycine max HOM05D006621 ORTHO05D008425 2.9e-14 81.6 56 76.8
Oeu008113.1 Olea europaea HOM05D006621 ORTHO05D008425 2.9e-14 81.6 54 79.6
TPR.G24898 Trifolium pratense HOM05D006621 ORTHO05D008425 2.9e-14 81.6 54 77.8
EL10Ac3g06943 Beta vulgaris HOM05D006621 ORTHO05D008425 3.8e-14 81.3 56 75.0
Lj5g0023768 Lotus japonicus HOM05D006621 ORTHO05D008425 3.8e-14 81.3 54 79.6
TWI74G0211 Tripterygium wilfordii HOM05D006621 ORTHO05D008425 3.8e-14 81.3 63 66.7
AUR62012064 Chenopodium quinoa HOM05D006621 ORTHO05D008425 5.0e-14 80.9 56 73.2
Ciclev10011385m.g Citrus clementina HOM05D006621 ORTHO05D008425 5.0e-14 80.9 54 79.6
HanXRQChr01g0009671 Helianthus annuus HOM05D006621 ORTHO05D008425 8.5e-14 80.1 54 75.9
Potri.006G059500 Populus trichocarpa HOM05D006621 ORTHO05D008425 1.5e-13 79.3 56 75.0
CiPaw.09G032000 Carya illinoinensis HOM05D006621 ORTHO05D008425 3.2e-13 78.2 50 84.0
ClCG04G002310 Citrullus lanatus HOM05D006621 ORTHO05D008425 3.2e-13 78.2 56 76.8
CsaV3_4G030430 Cucumis sativus L. HOM05D006621 ORTHO05D008425 4.2e-13 77.8 56 75.0
PSO339G6474 Papaver somniferum HOM05D006621 ORTHO05D008425 4.2e-13 77.8 54 75.9
PSO384G1846 Papaver somniferum HOM05D006621 ORTHO05D008425 4.2e-13 77.8 54 75.9
Sabra06G0042800 Salix brachista HOM05D006621 ORTHO05D008425 4.2e-13 77.8 56 73.2
Nitab4.5_0003572g0080 Nicotiana tabacum HOM05D006621 ORTHO05D008425 7.2e-13 77.0 54 75.9
Oeu033745.1 Olea europaea HOM05D006621 ORTHO05D008425 7.2e-13 77.0 54 74.1
MELO3C008903.2 Cucumis melo HOM05D006621 ORTHO05D008425 9.4e-13 76.6 56 73.2
Sc13g0002140 Simmondsia chinensis HOM05D006621 ORTHO05D008425 9.4e-13 76.6 54 75.9
Atru.chr8.1052 Acer truncatum HOM05D006621 ORTHO05D008425 1.2e-12 76.3 54 75.9
Aqoxy1G00197 Aquilegia oxysepala HOM05D006621 ORTHO05D008425 1.2e-12 76.3 56 71.4
BcaC06g32399 Brassica carinata HOM05D006621 ORTHO05D008425 1.2e-12 76.3 54 72.2
A10p29540 Brassica napus HOM05D006621 ORTHO05D008425 1.2e-12 76.3 54 72.2
C09p69910 Brassica napus HOM05D006621 ORTHO05D008425 1.2e-12 76.3 54 72.2
BolC9t59734H Brassica oleracea HOM05D006621 ORTHO05D008425 1.2e-12 76.3 54 72.2
BraA10t44997Z Brassica rapa HOM05D006621 ORTHO05D008425 1.2e-12 76.3 54 72.2
THA.LOC104799308 Tarenaya hassleriana HOM05D006621 ORTHO05D008425 1.2e-12 76.3 56 71.4
HPP92_015468 Vanilla planifolia HOM05D006621 ORTHO05D008425 1.6e-12 75.9 54 75.9
BcaC06g32538 Brassica carinata HOM05D006621 ORTHO05D008425 2.1e-12 75.5 54 72.2
CAN.G691.11 Capsicum annuum HOM05D006621 ORTHO05D008425 2.1e-12 75.5 50 82.0
Solyc03g059030.4 Solanum lycopersicum HOM05D006621 ORTHO05D008425 2.1e-12 75.5 54 75.9
Aa31LG11G7690 Aethionema arabicum HOM05D006621 ORTHO05D008425 2.7e-12 75.1 54 74.1
Os06g0320100 Oryza sativa ssp. japonica HOM05D006621 ORTHO05D008425 2.7e-12 75.1 50 78.0
Zm00001eb381660 Zea mays HOM05D006621 ORTHO05D008425 3.6e-12 74.7 50 78.0
Zm00001eb381720 Zea mays HOM05D006621 ORTHO05D008425 3.6e-12 74.7 50 78.0
AL6G16950 Arabidopsis lyrata HOM05D006621 ORTHO05D008425 6.1e-12 73.9 54 70.4
AT5G06830 Arabidopsis thaliana HOM05D006621 ORTHO05D008425 6.1e-12 73.9 54 70.4
Carub.0006s0572 Capsella rubella HOM05D006621 ORTHO05D008425 6.1e-12 73.9 54 70.4
Sp6g36030 Schrenkiella parvula HOM05D006621 ORTHO05D008425 6.1e-12 73.9 54 70.4
Sed0013147 Sechium edule HOM05D006621 ORTHO05D008425 6.1e-12 73.9 56 73.2
CAN.G654.6 Capsicum annuum HOM05D006621 ORTHO05D008425 8.0e-12 73.6 54 70.4
Thhalv10013160m.g Eutrema salsugineum HOM05D006621 ORTHO05D008425 1.4e-11 72.8 54 68.5
Sopen03g013060 Solanum pennellii HOM05D006621 ORTHO05D008425 1.4e-11 72.8 54 72.2
CARHR206340 Cardamine hirsuta HOM05D006621 ORTHO05D008425 1.8e-11 72.4 54 70.4
unitig_27.g25079 Utricularia gibba HOM05D006621 ORTHO05D008425 2.3e-11 72.0 56 69.6
CDE10G0898 Ceratophyllum demersum HOM05D006621 ORTHO05D008425 8.8e-11 70.1 54 66.7
ATR0605G120 Amborella trichopoda HOM05D006621 ORTHO05D008425 1.5e-10 69.3 56 67.9
Lsat_1_v5_gn_1_107121 Lactuca sativa HOM05D006621 ORTHO05D008425 1.5e-10 69.3 50 80.0
Hund19192 Selenicereus undatus HOM05D006621 ORTHO05D008425 9.7e-10 66.6 75 53.3
RcHm_v2.0_Chr3g0480231 Rosa chinensis HOM05D006621 ORTHO05D043305 2.2e-06 55.5 41 75.6


User provided reference genes

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