Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 7.9e-135 483.8 247 100.0
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.8e-134 482.6 247 99.6
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 6.3e-108 394.4 252 78.2
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 3.2e-104 382.1 245 77.1
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 2.0e-101 372.9 270 71.9
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 5.9e-98 361.3 227 78.0
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.9e-96 356.3 272 71.0
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 1.6e-95 353.2 250 68.4
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 1.0e-94 350.5 255 69.8
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 7.5e-93 344.4 248 69.8
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 1.7e-92 343.2 288 63.2
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 2.2e-92 342.8 251 69.7
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 1.4e-91 340.1 253 70.0
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 5.4e-91 338.2 241 71.0
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 7.7e-90 334.3 260 66.2
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.7e-89 333.2 247 69.6
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 2.9e-89 332.4 254 65.7
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.9e-89 332.4 251 68.1
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 5.0e-89 331.6 248 66.9
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 5.0e-89 331.6 258 68.2
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 6.5e-89 331.3 248 67.7
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.1e-88 330.5 252 67.5
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 1.5e-88 330.1 253 69.2
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.9e-88 329.7 247 67.2
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 1.9e-88 329.7 247 66.8
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 2.5e-88 329.3 253 66.0
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 9.4e-88 327.4 249 65.1
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 9.4e-88 327.4 247 66.4
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 9.4e-88 327.4 256 64.8
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.2e-87 327.0 255 65.9
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 1.2e-87 327.0 251 65.7
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.1e-87 326.2 249 67.5
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.1e-87 326.2 247 66.8
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 2.1e-87 326.2 251 65.7
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 3.6e-87 325.5 247 65.2
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 3.6e-87 325.5 247 68.0
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 6.1e-87 324.7 241 66.4
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 8.0e-87 324.3 247 66.4
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 8.0e-87 324.3 247 66.4
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 8.0e-87 324.3 248 67.3
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 8.0e-87 324.3 247 67.6
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.0e-86 323.9 258 65.5
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.4e-86 323.6 247 64.8
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 1.4e-86 323.6 249 67.1
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 1.8e-86 323.2 274 63.5
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.3e-86 322.8 247 67.2
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 4.0e-86 322.0 243 67.1
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 5.2e-86 321.6 247 65.6
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 6.8e-86 321.2 273 63.0
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 8.8e-86 320.9 245 65.7
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 2.0e-85 319.7 252 64.3
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 2.6e-85 319.3 253 62.8
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 2.6e-85 319.3 252 64.3
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 7.5e-85 317.8 260 65.0
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 1.7e-84 316.6 244 64.3
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.2e-84 316.2 225 67.6
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.8e-84 315.8 270 63.3
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 3.7e-84 315.5 243 64.6
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 3.7e-84 315.5 249 67.5
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 4.9e-84 315.1 241 66.8
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 4.9e-84 315.1 252 64.3
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.8e-83 313.2 245 64.1
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 1.8e-83 313.2 252 64.3
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 5.4e-83 311.6 252 64.3
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 5.4e-83 311.6 219 71.2
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 1.2e-82 310.5 346 52.9
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 2.0e-82 309.7 224 69.6
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 2.7e-82 309.3 244 63.5
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 3.5e-82 308.9 249 62.2
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 4.5e-82 308.5 247 63.2
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 1.3e-81 307.0 250 64.8
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 1.7e-81 306.6 249 63.5
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 6.6e-81 304.7 246 61.4
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 8.6e-81 304.3 252 61.9
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 1.9e-80 303.1 250 61.6
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 3.3e-80 302.4 253 62.1
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 3.3e-80 302.4 248 64.1
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 1.2e-79 300.4 246 61.0
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 2.1e-79 299.7 251 62.2
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 3.6e-79 298.9 246 60.6
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 3.6e-79 298.9 250 61.2
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 6.1e-79 298.1 243 61.7
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 8.0e-79 297.7 243 61.7
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 8.0e-79 297.7 247 59.5
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 1.8e-78 296.6 247 60.7
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 2.3e-78 296.2 247 60.3
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 4.0e-78 295.4 248 60.5
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 6.8e-78 294.7 245 60.4
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.2e-77 293.9 249 62.7
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 4.4e-77 292.0 245 61.2
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 4.4e-77 292.0 248 64.5
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 5.7e-77 291.6 242 62.4
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 1.3e-76 290.4 247 58.7
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 2.2e-76 289.7 241 59.3
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 3.7e-76 288.9 246 57.7
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 4.9e-76 288.5 248 59.7
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 1.4e-75 287.0 247 60.7
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 1.4e-75 287.0 172 77.9
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 6.6e-73 278.1 249 54.2
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 5.6e-72 275.0 167 77.8
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 2.2e-68 263.1 215 64.2
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 3.9e-65 252.3 186 65.6
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 5.0e-65 251.9 221 57.0
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 1.1e-64 250.8 247 55.9
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.1e-64 250.8 206 61.2
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 1.5e-64 250.4 226 56.6
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 3.6e-63 245.7 241 53.5
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 4.7e-63 245.4 167 71.9
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 6.2e-63 245.0 245 53.9
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 2.3e-62 243.0 208 63.0
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 2.6e-61 239.6 198 61.6
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 1.7e-60 236.9 146 74.0
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.1e-59 234.2 247 51.4
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 2.4e-59 233.0 187 62.0
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 7.8e-58 228.0 427 38.9
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.0e-57 227.6 185 57.8
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 3.6e-55 219.2 185 62.7
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.1e-54 217.6 187 61.5
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.4e-54 217.2 160 65.0
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 2.3e-54 216.5 177 64.4
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 6.8e-54 214.9 215 55.8
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 1.2e-53 214.2 154 70.8
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 1.2e-53 214.2 154 70.8
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 2.2e-52 209.9 177 62.1
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 1.7e-49 200.3 242 44.2
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 7.6e-45 184.9 181 51.9
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 3.2e-43 179.5 162 62.3
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 1.6e-42 177.2 151 60.9
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 1.3e-41 174.1 116 69.8
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 1.5e-40 170.6 188 54.3
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.5e-40 169.9 158 58.2
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.1e-38 164.5 101 77.2
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 6.4e-36 155.2 175 53.7
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 1.6e-34 150.6 131 61.1
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.7e-34 149.8 183 46.4
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 2.5e-32 143.3 102 64.7
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 2.1e-31 140.2 127 53.5
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 8.4e-28 128.3 119 53.8
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 5.5e-27 125.6 118 51.7
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 2.5e-24 116.7 134 47.0
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 2.5e-24 116.7 134 47.0
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.4e-22 110.9 83 65.1
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 1.2e-21 107.8 248 30.6
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 2.9e-20 103.2 121 51.2
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 8.4e-20 101.7 67 67.2
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 4.6e-18 95.9 70 62.9
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 3.9e-17 92.8 65 63.1
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 5.7e-16 89.0 67 62.7
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 6.3e-15 85.5 107 51.4
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.2e-12 77.0 94 46.8
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 5.0e-12 75.9 52 67.3
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 4.2e-11 72.8 94 46.8
PGSC0003DMG400043354 Solanum tuberosum HOM05D004791 ORTHO05D005637 5.7e-08 62.4 80 52.5
Oeu020446.1 Olea europaea HOM05D004791 ORTHO05D005637 1.3e-07 61.2 84 45.2
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 1.4e-06 57.8 34 79.4
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 4.1e-06 56.2 40 65.0


User provided reference genes

Program Settings