Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 3.7e-66 255.0 155 100.0
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.1e-62 243.4 155 85.2
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.0e-55 220.3 154 89.6
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 4.8e-45 184.9 158 65.2
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 1.8e-44 183.0 151 66.9
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 4.9e-42 174.9 156 64.1
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 3.2e-41 172.2 156 64.1
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 9.3e-41 170.6 151 62.9
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 4.6e-40 168.3 160 60.0
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 1.0e-39 167.2 153 60.1
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 1.7e-39 166.4 158 65.2
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 1.7e-39 166.4 145 64.8
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 3.9e-39 165.2 146 61.6
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 5.1e-39 164.9 154 61.7
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 6.6e-39 164.5 159 60.4
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 6.6e-39 164.5 154 60.4
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 8.7e-39 164.1 151 58.3
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 8.7e-39 164.1 148 60.8
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 1.1e-38 163.7 156 59.0
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 1.1e-38 163.7 144 61.8
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 1.1e-38 163.7 146 61.0
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 1.5e-38 163.3 156 59.0
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 1.9e-38 162.9 143 65.7
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 1.9e-38 162.9 157 74.5
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 1.9e-38 162.9 150 66.0
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 4.3e-38 161.8 143 61.5
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 4.3e-38 161.8 151 59.6
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 5.6e-38 161.4 153 56.2
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 7.3e-38 161.0 154 55.8
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 7.3e-38 161.0 158 58.2
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 7.3e-38 161.0 158 58.2
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 7.3e-38 161.0 153 56.2
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 9.6e-38 160.6 156 55.1
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 9.6e-38 160.6 154 57.8
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 9.6e-38 160.6 143 60.1
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 1.3e-37 160.2 151 66.2
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 1.3e-37 160.2 153 56.2
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 1.3e-37 160.2 154 64.3
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 1.6e-37 159.8 143 60.8
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 1.6e-37 159.8 157 55.4
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 1.6e-37 159.8 144 68.8
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 1.6e-37 159.8 153 63.4
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 2.1e-37 159.5 152 55.3
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 2.1e-37 159.5 149 60.4
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 2.1e-37 159.5 143 58.7
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 2.1e-37 159.5 153 55.6
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 2.8e-37 159.1 143 65.7
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 3.6e-37 158.7 154 59.1
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 3.6e-37 158.7 153 58.8
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 4.8e-37 158.3 159 57.9
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 6.2e-37 157.9 154 58.4
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 8.1e-37 157.5 143 58.0
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 1.1e-36 157.1 156 53.8
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 1.1e-36 157.1 142 62.0
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 1.8e-36 156.4 157 58.6
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 2.4e-36 156.0 143 58.7
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 2.4e-36 156.0 153 56.2
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 3.1e-36 155.6 161 56.5
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 3.1e-36 155.6 143 60.8
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 3.1e-36 155.6 144 57.6
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 4.0e-36 155.2 145 57.2
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 6.9e-36 154.5 153 56.9
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 6.9e-36 154.5 155 58.1
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 6.9e-36 154.5 148 59.5
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 1.2e-35 153.7 154 55.8
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 1.5e-35 153.3 144 58.3
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 1.5e-35 153.3 158 55.1
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 2.6e-35 152.5 151 54.3
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 2.6e-35 152.5 155 56.8
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 3.4e-35 152.1 148 58.8
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 3.4e-35 152.1 151 55.6
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 4.5e-35 151.8 150 54.0
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 5.8e-35 151.4 150 55.3
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 5.8e-35 151.4 151 55.6
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 7.6e-35 151.0 143 58.0
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 7.6e-35 151.0 143 58.0
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 9.9e-35 150.6 143 64.3
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 1.7e-34 149.8 143 55.2
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 4.9e-34 148.3 151 53.6
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 4.9e-34 148.3 141 59.6
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 4.9e-34 148.3 153 59.5
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 8.4e-34 147.5 153 56.2
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 1.1e-33 147.1 147 56.5
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 5.4e-33 144.8 158 53.8
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 7.1e-33 144.4 151 53.0
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 1.6e-32 143.3 149 59.7
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 2.1e-32 142.9 145 68.3
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 3.5e-32 142.1 151 51.7
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 6.7e-31 137.9 158 59.5
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 2.5e-30 136.0 152 53.3
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 4.3e-30 135.2 153 50.3
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 5.6e-30 134.8 143 53.8
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 5.6e-30 134.8 147 53.1
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 1.6e-29 133.3 162 50.0
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 2.8e-29 132.5 84 77.4
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 3.7e-29 132.1 94 70.2
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 4.8e-29 131.7 143 51.7
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.8e-28 129.8 153 50.3
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.8e-28 129.8 153 50.3
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 1.5e-27 126.7 151 53.0
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 2.6e-27 125.9 153 47.7
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 5.8e-27 124.8 153 47.7
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 1.7e-26 123.2 88 69.3
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 2.1e-24 116.3 152 47.4
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 5.1e-23 111.7 161 43.5
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 6.2e-21 104.8 154 48.7
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 1.4e-20 103.6 75 66.7
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 2.4e-20 102.8 151 45.7
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 4.5e-19 98.6 57 86.0
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 1.0e-18 97.4 86 58.1
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 2.9e-18 95.9 152 41.4
ClCG03G010310 Citrullus lanatus HOM05D005786 ORTHO05D006946 5.5e-17 91.7 116 50.0
Oeu040717.1 Olea europaea HOM05D005786 ORTHO05D006946 5.1e-15 85.1 100 56.0
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 4.3e-14 82.0 83 51.8
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 5.7e-14 81.6 57 64.9
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 9.7e-14 80.9 149 34.2
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 4.8e-13 78.6 154 32.5
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 4.8e-13 78.6 156 32.1
CARHR216470 Cardamine hirsuta HOM05D005786 ORTHO05D006946 1.8e-12 76.6 89 51.7
Ah.04g159110 Amaranthus hybridus HOM05D005786 ORTHO05D006946 2.0e-11 73.2 95 45.3
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 1.9e-09 66.6 48 62.5
BolC2t08267H Brassica oleracea HOM05D005786 ORTHO05D006946 7.9e-08 61.2 78 47.4
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 1.5e-06 57.0 62 48.4


User provided reference genes

Program Settings