Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033523 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 2.1e-94 349.0 171 100.0
CSS0050121 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 6.8e-85 317.4 171 91.8
CSS0000799 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 4.3e-63 245.0 154 82.5
CSS0033849 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 9.5e-63 243.8 159 80.5
CSS0001180 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 1.2e-62 243.4 154 81.8
CSS0000537 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 2.1e-62 242.7 159 80.5
CSS0034079 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 1.1e-61 240.4 159 79.9
MBI19_g36823_MAGBIO Magnolia biondii HOM05D001685 ORTHO05D007488 1.7e-59 233.0 154 77.3
ATR0706G022 Amborella trichopoda HOM05D001685 ORTHO05D007488 8.3e-59 230.7 154 76.0
Actinidia01944 Actinidia chinensis HOM05D001685 ORTHO05D007488 1.1e-58 230.3 154 77.9
TAR636G1751 Trochodendron aralioides HOM05D001685 ORTHO05D007488 1.1e-58 230.3 154 76.6
Lalb_Chr18g0055611 Lupinus albus HOM05D001685 ORTHO05D007488 1.4e-58 229.9 150 78.0
THA.LOC104802719 Tarenaya hassleriana HOM05D001685 ORTHO05D007488 3.2e-58 228.8 150 77.3
Cc03_g02120 Coffea canephora HOM05D001685 ORTHO05D007488 9.2e-58 227.3 155 74.2
Dinv44406 Davidia involucrata HOM05D001685 ORTHO05D007488 1.2e-57 226.9 154 76.0
Nn3g21379 Nelumbo nucifera HOM05D001685 ORTHO05D007488 1.6e-57 226.5 154 75.3
vmacro08110 Vaccinium macrocarpon HOM05D001685 ORTHO05D007488 2.1e-57 226.1 158 72.8
Aqoxy1G01559 Aquilegia oxysepala HOM05D001685 ORTHO05D007488 3.5e-57 225.3 154 75.3
Cpa.g.sc16.146 Carica papaya HOM05D001685 ORTHO05D007488 4.6e-57 224.9 150 75.3
CANSAT78G0268 Cannabis sativa HOM05D001685 ORTHO05D007488 6.0e-57 224.6 150 76.0
Rhsim04G0218700 Rhododendron simsii HOM05D001685 ORTHO05D007488 6.0e-57 224.6 158 72.2
TWI09G0695 Tripterygium wilfordii HOM05D001685 ORTHO05D007488 1.0e-56 223.8 150 75.3
Nitab4.5_0000644g0130 Nicotiana tabacum HOM05D001685 ORTHO05D007488 1.3e-56 223.4 154 73.4
CDE01G0502 Ceratophyllum demersum HOM05D001685 ORTHO05D007488 1.7e-56 223.0 151 74.8
Ciclev10004482m.g Citrus clementina HOM05D001685 ORTHO05D007488 1.7e-56 223.0 150 76.0
Eucgr.H03869 Eucalyptus grandis HOM05D001685 ORTHO05D007488 1.7e-56 223.0 150 76.0
Hma1.2p1_0698F.1_g205400 Hydrangea macrophylla HOM05D001685 ORTHO05D007488 1.7e-56 223.0 154 74.0
Sc13g0003540 Simmondsia chinensis HOM05D001685 ORTHO05D007488 1.7e-56 223.0 154 73.4
arahy.Tifrunner.gnm1.ann1.536D4K Arachis hypogaea HOM05D001685 ORTHO05D007488 2.3e-56 222.6 150 74.7
arahy.Tifrunner.gnm1.ann1.ADAJ08 Arachis hypogaea HOM05D001685 ORTHO05D007488 2.3e-56 222.6 150 74.7
Atru.chr4.2789 Acer truncatum HOM05D001685 ORTHO05D007488 3.0e-56 222.2 150 75.3
MD16G1172900 Malus domestica HOM05D001685 ORTHO05D007488 3.0e-56 222.2 150 74.7
PGR004G0738 Punica granatum HOM05D001685 ORTHO05D007488 3.0e-56 222.2 150 74.7
SalBow2G3264 Salvia bowleyana HOM05D001685 ORTHO05D007488 3.0e-56 222.2 149 73.8
AL6G29840 Arabidopsis lyrata HOM05D001685 ORTHO05D007488 3.9e-56 221.9 162 71.0
CiPaw.01G151100 Carya illinoinensis HOM05D001685 ORTHO05D007488 3.9e-56 221.9 150 74.7
C02p10030 Brassica napus HOM05D001685 ORTHO05D007488 5.1e-56 221.5 162 71.0
BolC2t06905H Brassica oleracea HOM05D001685 ORTHO05D007488 5.1e-56 221.5 162 71.0
BraA02t05459Z Brassica rapa HOM05D001685 ORTHO05D007488 5.1e-56 221.5 162 71.0
Carub.0006s1685 Capsella rubella HOM05D001685 ORTHO05D007488 5.1e-56 221.5 162 71.0
Nitab4.5_0000784g0140 Nicotiana tabacum HOM05D001685 ORTHO05D007488 5.1e-56 221.5 154 72.7
BcaB05g23340 Brassica carinata HOM05D001685 ORTHO05D007488 6.6e-56 221.1 163 70.6
A02p05000 Brassica napus HOM05D001685 ORTHO05D007488 6.6e-56 221.1 163 70.6
Solyc01g067530.3 Solanum lycopersicum HOM05D001685 ORTHO05D007488 6.6e-56 221.1 154 72.7
Sopen01g029480 Solanum pennellii HOM05D001685 ORTHO05D007488 6.6e-56 221.1 154 72.7
SGA_v2.0_scaffold86G26925 Striga asiatica HOM05D001685 ORTHO05D007488 6.6e-56 221.1 150 74.0
CARHR194450 Cardamine hirsuta HOM05D001685 ORTHO05D007488 8.6e-56 220.7 163 70.6
Haze_01243 Corylus avellana HOM05D001685 ORTHO05D007488 8.6e-56 220.7 150 74.7
FvH4_4g17620 Fragaria vesca HOM05D001685 ORTHO05D007488 1.1e-55 220.3 150 74.0
FAN12G0539 Fragaria x ananassa HOM05D001685 ORTHO05D007488 1.1e-55 220.3 150 74.0
FAN12G2140 Fragaria x ananassa HOM05D001685 ORTHO05D007488 1.1e-55 220.3 150 74.0
CAN.G580.1 Capsicum annuum HOM05D001685 ORTHO05D007488 1.5e-55 219.9 154 72.1
Cfa015363 Carpinus fangiana HOM05D001685 ORTHO05D007488 1.5e-55 219.9 150 74.7
Thhalv10012865m.g Eutrema salsugineum HOM05D001685 ORTHO05D007488 1.5e-55 219.9 162 70.4
Ah.04g153910 Amaranthus hybridus HOM05D001685 ORTHO05D007488 1.9e-55 219.5 154 73.4
AT5G18570 Arabidopsis thaliana HOM05D001685 ORTHO05D007488 1.9e-55 219.5 162 69.8
HanXRQChr03g0079811 Helianthus annuus HOM05D001685 ORTHO05D007488 1.9e-55 219.5 154 72.7
Manes.15G014800 Manihot esculenta HOM05D001685 ORTHO05D007488 1.9e-55 219.5 150 74.0
Prupe.1G139700 Prunus persica HOM05D001685 ORTHO05D007488 1.9e-55 219.5 150 74.0
Hund17597 Selenicereus undatus HOM05D001685 ORTHO05D007488 1.9e-55 219.5 154 72.7
FAN07G1165 Fragaria x ananassa HOM05D001685 ORTHO05D007488 2.5e-55 219.2 150 73.3
FAN17G0087 Fragaria x ananassa HOM05D001685 ORTHO05D007488 2.5e-55 219.2 150 73.3
Phvul.006G163000 Phaseolus vulgaris HOM05D001685 ORTHO05D007488 2.5e-55 219.2 150 73.3
RcHm_v2.0_Chr4g0421541 Rosa chinensis HOM05D001685 ORTHO05D007488 2.5e-55 219.2 150 73.3
Sp6g25760 Schrenkiella parvula HOM05D001685 ORTHO05D007488 2.5e-55 219.2 162 69.8
VMungo0540G1912 Vigna mungo HOM05D001685 ORTHO05D007488 3.3e-55 218.8 150 73.3
Aa31LG11G11050 Aethionema arabicum HOM05D001685 ORTHO05D007488 4.3e-55 218.4 175 65.7
ECA240G2366 Erigeron canadensis HOM05D001685 ORTHO05D007488 5.6e-55 218.0 154 72.1
Glyma.13G216800 Glycine max HOM05D001685 ORTHO05D007488 7.3e-55 217.6 150 72.7
MELO3C006624.2 Cucumis melo HOM05D001685 ORTHO05D007488 9.5e-55 217.2 150 75.3
QL06p008035 Quercus lobata HOM05D001685 ORTHO05D007488 9.5e-55 217.2 151 73.5
Sed0007220 Sechium edule HOM05D001685 ORTHO05D007488 9.5e-55 217.2 150 76.0
ClCG00G005760 Citrullus lanatus HOM05D001685 ORTHO05D007488 1.2e-54 216.9 150 75.3
ClCG05G005930 Citrullus lanatus HOM05D001685 ORTHO05D007488 1.2e-54 216.9 150 75.3
Peaxi162Scf00386g00526 Petunia axillaris HOM05D001685 ORTHO05D007488 1.2e-54 216.9 154 70.8
Zm00001eb111050 Zea mays HOM05D001685 ORTHO05D007488 1.2e-54 216.9 150 72.7
Gohir.A10G162200 Gossypium hirsutum HOM05D001685 ORTHO05D007488 1.6e-54 216.5 150 73.3
Gorai.011G188100 Gossypium raimondii HOM05D001685 ORTHO05D007488 1.6e-54 216.5 150 73.3
Thecc.04G280200 Theobroma cacao HOM05D001685 ORTHO05D007488 1.6e-54 216.5 150 74.0
SEGI_37784 Sequoiadendron giganteum HOM05D001685 ORTHO05D007488 2.1e-54 216.1 153 70.6
MSTRG.3936 Avicennia marina HOM05D001685 ORTHO05D007488 3.6e-54 215.3 149 71.1
HPP92_001325 Vanilla planifolia HOM05D001685 ORTHO05D007488 3.6e-54 215.3 154 72.1
Lsat_1_v5_gn_5_51241 Lactuca sativa HOM05D001685 ORTHO05D007488 4.7e-54 214.9 154 72.1
Prupe.1G145700 Prunus persica HOM05D001685 ORTHO05D007488 4.7e-54 214.9 150 72.7
COL.COLO4_13905 Corchorus olitorius HOM05D001685 ORTHO05D007488 6.2e-54 214.5 150 72.7
Os07g0669200 Oryza sativa ssp. japonica HOM05D001685 ORTHO05D007488 6.2e-54 214.5 150 71.3
Migut.G00277 Erythranthe guttata HOM05D001685 ORTHO05D007488 1.1e-53 213.8 149 70.5
Sabra10G0015900 Salix brachista HOM05D001685 ORTHO05D007488 1.1e-53 213.8 153 68.6
DCAR_024555 Daucus carota HOM05D001685 ORTHO05D007488 1.4e-53 213.4 154 70.8
Medtr2g019790 Medicago truncatula HOM05D001685 ORTHO05D007488 1.8e-53 213.0 150 72.0
Ca_00557_v3 Cicer arietinum L. HOM05D001685 ORTHO05D007488 2.3e-53 212.6 150 72.0
Lj6g0018727 Lotus japonicus HOM05D001685 ORTHO05D007488 2.3e-53 212.6 150 71.3
TPR.G35520 Trifolium pratense HOM05D001685 ORTHO05D007488 2.3e-53 212.6 150 72.7
Potri.010G022400 Populus trichocarpa HOM05D001685 ORTHO05D007488 6.8e-53 211.1 150 70.0
Oeu021113.2 Olea europaea HOM05D001685 ORTHO05D007488 1.2e-52 210.3 149 71.8
Psat1g189920 Pisum sativum HOM05D001685 ORTHO05D007488 2.1e-49 199.5 150 68.0
EL10Ac3g06577 Beta vulgaris HOM05D001685 ORTHO05D007488 2.7e-49 199.1 151 67.5
AL9U11240 Arabidopsis lyrata HOM05D001685 ORTHO05D007488 4.6e-49 198.4 133 76.7
AL9U11270 Arabidopsis lyrata HOM05D001685 ORTHO05D007488 6.0e-49 198.0 133 76.7
SMO169G0319 Selaginella moellendorffii HOM05D001685 ORTHO05D007488 6.0e-49 198.0 151 65.6
CsaV3_3G014310 Cucumis sativus L. HOM05D001685 ORTHO05D007488 7.8e-49 197.6 150 70.0
CSS0036229 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 1.0e-48 197.2 135 77.0
Mapoly0136s0003 Marchantia polymorpha HOM05D001685 ORTHO05D007488 8.6e-48 194.1 151 63.6
Pp3c7_19740 Physcomitrium patens HOM05D001685 ORTHO05D007488 7.3e-47 191.0 156 60.9
Glyma.15G095700 Glycine max HOM05D001685 ORTHO05D007488 6.2e-46 188.0 132 72.7
BcaC03g13609 Brassica carinata HOM05D001685 ORTHO05D007488 1.1e-45 187.2 138 70.3
AagrBONN_evm.TU.Sc2ySwM_368.2660 Anthoceros agrestis HOM05D001685 ORTHO05D007488 4.4e-44 181.8 151 61.6
CSS0015415 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 4.6e-41 171.8 154 64.3
CBR_g24048 Chara braunii HOM05D001685 ORTHO05D007488 6.0e-41 171.4 156 56.4
Lj3C814G4 Lonicera japonica HOM05D001685 ORTHO05D007488 2.1e-38 162.9 133 66.2
MCO11G224 Micromonas commoda HOM05D001685 ORTHO05D007488 2.0e-36 156.4 155 52.3
Cre10.g433100 Chlamydomonas reinhardtii HOM05D001685 ORTHO05D007488 1.4e-34 150.2 153 52.3
FAN22G0503 Fragaria x ananassa HOM05D001685 ORTHO05D007488 2.1e-33 146.4 129 61.2
PRCOL_00003567 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 1.3e-32 143.7 160 49.4
GSVIVG01017775001 Vitis vinifera HOM05D001685 ORTHO05D007488 5.3e-29 131.7 131 57.3
AUR62042645 Chenopodium quinoa HOM05D001685 ORTHO05D007488 4.5e-28 128.6 154 50.6
Cfa024527 Carpinus fangiana HOM05D001685 ORTHO05D122472 3.3e-15 85.9 90 46.7
CBR_g39640 Chara braunii HOM05D001685 ORTHO05D006653 1.4e-13 80.5 123 38.2
Gohir.D10G168700 Gossypium hirsutum HOM05D001685 ORTHO05D007488 5.3e-13 78.6 71 63.4
Duzib150G0753 Durio zibethinus HOM05D001685 ORTHO05D006653 9.0e-13 77.8 93 44.1
Migut.J01517 Erythranthe guttata HOM05D001685 ORTHO05D006653 1.2e-12 77.4 100 44.0
HanXRQChr05g0134921 Helianthus annuus HOM05D001685 ORTHO05D006653 1.5e-12 77.0 100 42.0
Psat6g138600 Pisum sativum HOM05D001685 ORTHO05D006653 3.4e-12 75.9 100 43.0
TAR381G0153 Trochodendron aralioides HOM05D001685 ORTHO05D006653 3.4e-12 75.9 97 43.3
PGR083G0190 Punica granatum HOM05D001685 ORTHO05D006653 4.5e-12 75.5 100 43.0
Atru.chr3.3899 Acer truncatum HOM05D001685 ORTHO05D006653 7.6e-12 74.7 100 43.0
TPR.G18576 Trifolium pratense HOM05D001685 ORTHO05D006653 1.0e-11 74.3 100 41.0
TAR636G3542 Trochodendron aralioides HOM05D001685 ORTHO05D006653 1.0e-11 74.3 97 42.3
Cc10_g08830 Coffea canephora HOM05D001685 ORTHO05D006653 1.3e-11 73.9 135 34.1
ECA236G2424 Erigeron canadensis HOM05D001685 ORTHO05D006653 1.3e-11 73.9 100 40.0
Ca_09792_v3 Cicer arietinum L. HOM05D001685 ORTHO05D006653 2.2e-11 73.2 100 42.0
Oeu052796.1 Olea europaea HOM05D001685 ORTHO05D006653 3.8e-11 72.4 100 41.0
Lalb_Chr19g0128141 Lupinus albus HOM05D001685 ORTHO05D006653 6.5e-11 71.6 97 44.3
AUR62009576 Chenopodium quinoa HOM05D001685 ORTHO05D006653 8.4e-11 71.2 100 39.0
Lsat_1_v5_gn_8_73061 Lactuca sativa HOM05D001685 ORTHO05D006653 8.4e-11 71.2 100 39.0
arahy.Tifrunner.gnm1.ann1.KF4YKV Arachis hypogaea HOM05D001685 ORTHO05D006653 1.1e-10 70.9 100 40.0
arahy.Tifrunner.gnm1.ann1.ZC6F0H Arachis hypogaea HOM05D001685 ORTHO05D006653 1.1e-10 70.9 100 40.0
arahy.Tifrunner.gnm1.ann1.B8I18B Arachis hypogaea HOM05D001685 ORTHO05D006653 1.4e-10 70.5 100 40.0
AUR62001788 Chenopodium quinoa HOM05D001685 ORTHO05D006653 1.4e-10 70.5 100 39.0
HPP92_014383 Vanilla planifolia HOM05D001685 ORTHO05D006653 1.9e-10 70.1 100 39.0
Medtr1g073010 Medicago truncatula HOM05D001685 ORTHO05D006653 2.5e-10 69.7 143 33.6
CiPaw.13G094700 Carya illinoinensis HOM05D001685 ORTHO05D006653 3.2e-10 69.3 100 40.0
Haze_24093 Corylus avellana HOM05D001685 ORTHO05D006653 3.2e-10 69.3 100 39.0
Os11g0704300 Oryza sativa ssp. japonica HOM05D001685 ORTHO05D006653 3.2e-10 69.3 97 39.2
Cpa.g.sc81.154 Carica papaya HOM05D001685 ORTHO05D006653 5.5e-10 68.6 103 40.8
Nitab4.5_0000317g0040 Nicotiana tabacum HOM05D001685 ORTHO05D006653 7.1e-10 68.2 97 39.2
TWI79G0438 Tripterygium wilfordii HOM05D001685 ORTHO05D006653 9.3e-10 67.8 100 37.0
ATR0618G259 Amborella trichopoda HOM05D001685 ORTHO05D006653 1.2e-09 67.4 100 38.0
PRCOL_00003098 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 1.6e-09 67.0 149 32.2
SEGI_41152 Sequoiadendron giganteum HOM05D001685 ORTHO05D006653 1.6e-09 67.0 100 35.0
A08p35550 Brassica napus HOM05D001685 ORTHO05D006653 2.1e-09 66.6 96 38.5
BraA08t35461Z Brassica rapa HOM05D001685 ORTHO05D006653 2.1e-09 66.6 96 38.5
SEGI_38445 Sequoiadendron giganteum HOM05D001685 ORTHO05D006653 2.1e-09 66.6 100 35.0
THA.LOC104826328 Tarenaya hassleriana HOM05D001685 ORTHO05D006653 2.1e-09 66.6 101 38.6
PSO384G4450 Papaver somniferum HOM05D001685 ORTHO05D006653 3.5e-09 65.9 100 38.0
VMungo1383G1510 Vigna mungo HOM05D001685 ORTHO05D006653 3.5e-09 65.9 100 40.0
BcaB03g13384 Brassica carinata HOM05D001685 ORTHO05D006653 6.1e-09 65.1 96 37.5
Cfa011498 Carpinus fangiana HOM05D002515 ORTHO05D006653 6.1e-09 65.1 100 37.0
Manes.07G091200 Manihot esculenta HOM05D001685 ORTHO05D006653 6.1e-09 65.1 100 40.0
C08p03210 Brassica napus HOM05D001685 ORTHO05D006653 7.9e-09 64.7 96 37.5
BolC8t47119H Brassica oleracea HOM05D001685 ORTHO05D006653 7.9e-09 64.7 96 37.5
Phvul.002G003900 Phaseolus vulgaris HOM05D001685 ORTHO05D006653 7.9e-09 64.7 100 40.0
Aa31sc36G30 Aethionema arabicum HOM05D001685 ORTHO05D006653 2.3e-08 63.2 103 35.9
VMungo1383G3233 Vigna mungo HOM05D001685 ORTHO05D006653 2.3e-08 63.2 100 39.0
Ah.07g200810 Amaranthus hybridus HOM05D001685 ORTHO05D007488 3.9e-08 62.4 54 55.6
Glyma.01G148100 Glycine max HOM05D001685 ORTHO05D006653 6.7e-08 61.6 100 39.0
Eucgr.B02369 Eucalyptus grandis HOM05D001685 ORTHO05D006653 1.1e-07 60.8 98 38.8
Gohir.A13G224400 Gossypium hirsutum HOM05D001685 ORTHO05D006653 4.3e-07 58.9 93 35.5
Gohir.D13G229400 Gossypium hirsutum HOM05D001685 ORTHO05D006653 4.3e-07 58.9 93 35.5
Gorai.013G260100 Gossypium raimondii HOM05D001685 ORTHO05D006653 4.3e-07 58.9 93 35.5
DCAR_005335 Daucus carota HOM05D001685 ORTHO05D006653 5.7e-07 58.5 100 36.0
Prupe.6G078100 Prunus persica HOM05D001685 ORTHO05D006653 5.7e-07 58.5 103 35.0
Aqoxy5G01203 Aquilegia oxysepala HOM05D001685 ORTHO05D006653 7.4e-07 58.2 100 34.0
DCAR_004329 Daucus carota HOM05D001685 ORTHO05D006653 7.4e-07 58.2 100 36.0
Zm00001eb417820 Zea mays HOM05D001685 ORTHO05D006653 7.4e-07 58.2 97 36.1
Nitab4.5_0002557g0010 Nicotiana tabacum HOM05D001685 ORTHO05D006653 1.6e-06 57.0 100 35.0
Aqoxy4G02919 Aquilegia oxysepala HOM05D001685 ORTHO05D006653 2.2e-06 56.6 100 33.0


User provided reference genes

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