Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 5.8e-141 504.2 254 100.0
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 9.9e-133 476.9 240 99.6
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 5.1e-113 411.4 247 83.0
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 5.1e-113 411.4 248 82.7
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 6.9e-110 401.0 251 82.5
vmacro18351 Vaccinium macrocarpon HOM05D006878 ORTHO05D008579 1.7e-108 396.4 257 77.4
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 7.2e-107 391.0 250 77.2
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 1.5e-104 383.3 252 75.8
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 2.8e-103 379.0 251 74.5
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 4.8e-103 378.3 250 75.2
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 2.4e-102 375.9 229 80.8
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 2.4e-102 375.9 248 75.0
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 1.2e-101 373.6 253 74.3
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 7.7e-101 370.9 248 75.0
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 1.7e-100 369.8 250 74.0
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 2.2e-100 369.4 244 75.0
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 5.0e-100 368.2 237 78.1
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 3.2e-99 365.5 242 75.2
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 2.1e-98 362.8 251 73.3
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 2.7e-98 362.5 278 68.0
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 6.1e-98 361.3 249 73.9
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 6.1e-98 361.3 241 74.7
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 1.4e-97 360.1 242 74.4
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 1.4e-97 360.1 249 73.5
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 2.3e-97 359.4 252 73.4
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 3.9e-97 358.6 246 74.0
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 1.1e-96 357.1 241 72.6
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 1.5e-96 356.7 241 72.2
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 2.0e-96 356.3 244 73.8
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 2.0e-96 356.3 241 71.8
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 7.4e-96 354.4 238 73.9
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 2.2e-95 352.8 248 73.4
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 6.3e-95 351.3 243 75.3
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 8.2e-95 350.9 251 69.7
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 1.4e-94 350.1 244 73.4
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 2.4e-94 349.4 239 73.2
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 4.1e-94 348.6 278 65.8
MSTRG.3257 Avicennia marina HOM05D006878 ORTHO05D008579 5.3e-94 348.2 244 73.0
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 6.9e-94 347.8 239 73.2
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 3.4e-93 345.5 239 72.8
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 5.0e-92 341.7 248 71.8
SalBow7G1076 Salvia bowleyana HOM05D006878 ORTHO05D008579 1.1e-91 340.5 248 71.4
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 1.4e-91 340.1 237 72.2
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 2.5e-91 339.3 245 69.4
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 3.2e-91 339.0 244 70.1
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 3.2e-91 339.0 245 69.4
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 5.5e-91 338.2 247 70.4
SGA_v2.0_scaffold47G17597 Striga asiatica HOM05D006878 ORTHO05D008579 5.5e-91 338.2 245 71.8
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 1.6e-90 336.7 231 72.7
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 1.6e-90 336.7 244 69.3
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 3.0e-89 332.4 252 68.3
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 3.9e-89 332.0 240 70.4
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 6.7e-89 331.3 240 70.8
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 1.5e-88 330.1 259 64.1
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 2.6e-88 329.3 274 64.2
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 5.7e-88 328.2 243 67.9
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 9.7e-88 327.4 249 66.3
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 1.3e-87 327.0 242 65.3
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 1.3e-87 327.0 238 69.3
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 4.8e-87 325.1 240 69.2
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 6.3e-87 324.7 247 65.6
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 6.3e-87 324.7 256 64.5
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 6.3e-87 324.7 259 62.9
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 6.3e-87 324.7 274 63.9
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 6.3e-87 324.7 267 65.9
FvH4_6g53600 Fragaria vesca HOM05D006878 ORTHO05D008579 1.1e-86 323.9 273 63.7
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 1.8e-86 323.2 245 68.6
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 2.4e-86 322.8 251 65.3
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 2.4e-86 322.8 240 68.8
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 3.1e-86 322.4 251 64.9
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 4.1e-86 322.0 251 64.5
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 7.0e-86 321.2 268 64.2
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 1.6e-85 320.1 259 63.3
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 1.6e-85 320.1 259 63.3
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 2.0e-85 319.7 245 65.3
FAN14G5463 Fragaria x ananassa HOM05D006878 ORTHO05D008579 2.6e-85 319.3 273 63.0
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 4.5e-85 318.5 245 65.3
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 4.5e-85 318.5 251 63.3
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 5.9e-85 318.2 246 65.9
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 5.9e-85 318.2 246 65.9
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 1.0e-84 317.4 218 72.5
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 1.7e-84 316.6 243 65.8
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 2.2e-84 316.2 243 65.8
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 3.8e-84 315.5 256 61.7
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 1.2e-82 310.5 233 66.5
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 1.8e-81 306.6 264 62.5
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 2.3e-81 306.2 246 65.4
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 5.2e-81 305.1 263 58.6
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 1.7e-79 300.1 237 65.0
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 2.4e-78 296.2 255 58.0
Zm00001eb112900 Zea mays HOM05D006878 ORTHO05D008579 2.0e-77 293.1 269 54.6
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 5.9e-77 291.6 239 61.5
Os11g0498400 Oryza sativa ssp. japonica HOM05D006878 ORTHO05D008579 6.5e-76 288.1 279 53.8
CDE05G3687 Ceratophyllum demersum HOM05D000160 ORTHO05D000496 1.8e-73 280.0 226 63.3
Lju41C53T12 Lonicera japonica HOM05D006878 ORTHO05D008579 1.8e-73 280.0 243 64.2
Medtr7g029090 Medicago truncatula HOM05D006878 ORTHO05D008579 5.4e-70 268.5 184 72.8
EL10Ac6g15414 Beta vulgaris HOM05D006878 ORTHO05D008579 2.0e-69 266.5 247 57.9
Lalb_Chr22g0360351 Lupinus albus HOM05D006878 ORTHO05D008579 3.2e-67 259.2 180 72.8
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 2.0e-56 223.4 131 80.9
Pp3c4_16130 Physcomitrium patens HOM05D006878 ORTHO05D008579 1.8e-54 216.9 268 44.8
SMO367G0946 Selaginella moellendorffii HOM05D006878 ORTHO05D008579 3.2e-54 216.1 221 53.8
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 4.3e-51 205.7 253 50.2
Mapoly0041s0098 Marchantia polymorpha HOM05D006878 ORTHO05D008579 6.2e-50 201.8 258 43.0
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 1.2e-48 197.6 248 48.8
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 1.2e-45 187.6 121 73.6
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 6.6e-44 181.8 248 44.0
CBR_g26294 Chara braunii HOM05D006878 ORTHO05D008579 3.4e-40 169.5 180 46.7
SEGI_11908 Sequoiadendron giganteum HOM05D006878 ORTHO05D008579 6.2e-34 148.7 121 60.3
FAN02G3703 Fragaria x ananassa HOM05D006878 ORTHO05D008579 3.2e-30 136.3 153 54.2
BraA03t09977Z Brassica rapa HOM05D006878 ORTHO05D008579 6.0e-29 132.1 125 56.0
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 9.3e-22 108.2 110 57.3
PRCOL_00001512 Prasinoderma coloniale HOM05D006878 ORTHO05D008579 1.7e-20 104.0 139 38.1
CDE05G3052 Ceratophyllum demersum HOM05D006878 ORTHO05D008579 4.3e-19 99.4 120 48.3
Actinidia36205 Actinidia chinensis HOM05D006878 ORTHO05D008579 5.6e-11 72.4 42 73.8
FAN23G0458 Fragaria x ananassa HOM05D006878 ORTHO05D008579 6.9e-09 65.5 38 81.6
Actinidia36204 Actinidia chinensis HOM05D006878 ORTHO05D008579 2.0e-08 63.9 75 54.7
Pp3c4_16200 Physcomitrium patens HOM05D006878 ORTHO05D008579 2.0e-08 63.9 133 35.3
FAN23G0356 Fragaria x ananassa HOM05D006878 ORTHO05D008579 4.9e-07 59.3 59 45.8


User provided reference genes

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