Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.0e-120 434.5 227 100.0
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-101 373.6 227 88.5
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.1e-94 349.4 216 87.0
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.8e-94 348.2 216 86.6
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.0e-93 344.0 216 86.1
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 6.5e-75 284.6 229 69.9
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 3.2e-66 255.8 183 73.8
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 6.1e-65 251.5 227 64.3
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 2.2e-62 243.0 231 61.5
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 4.8e-62 241.9 227 62.1
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 6.9e-61 238.0 229 63.8
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 6.9e-61 238.0 220 65.0
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 1.2e-60 237.3 198 68.2
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 4.5e-60 235.3 228 64.0
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 1.0e-59 234.2 219 60.3
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.7e-59 233.4 197 65.0
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 3.8e-59 232.3 222 59.5
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 8.5e-59 231.1 222 59.9
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 8.5e-59 231.1 219 59.8
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.4e-58 230.3 232 61.2
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.9e-58 229.9 195 65.6
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.5e-58 229.6 190 66.3
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 4.2e-58 228.8 172 72.7
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 4.2e-58 228.8 228 58.3
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 7.2e-58 228.0 228 61.0
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 7.2e-58 228.0 228 57.9
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 1.6e-57 226.9 217 61.3
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 2.1e-57 226.5 204 62.7
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 2.7e-57 226.1 217 59.9
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 3.6e-57 225.7 203 62.1
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 6.1e-57 224.9 216 61.1
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 6.1e-57 224.9 228 60.5
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.0e-56 224.2 232 58.6
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.4e-56 223.8 205 62.4
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.8e-56 223.4 229 59.0
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 2.3e-56 223.0 215 60.5
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 2.3e-56 223.0 224 60.7
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.0e-56 222.6 203 64.0
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 3.9e-56 222.2 228 58.3
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 3.9e-56 222.2 216 59.3
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 3.9e-56 222.2 164 71.3
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 5.1e-56 221.9 230 57.8
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 5.1e-56 221.9 217 61.3
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 5.1e-56 221.9 229 58.5
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 6.7e-56 221.5 218 59.6
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 6.7e-56 221.5 222 60.4
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 6.7e-56 221.5 223 60.5
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.1e-55 220.7 217 60.8
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.5e-55 220.3 193 64.8
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.5e-55 220.3 204 62.3
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 2.0e-55 219.9 217 59.9
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 2.0e-55 219.9 229 58.1
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 2.0e-55 219.9 217 59.4
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 2.0e-55 219.9 232 58.2
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 2.5e-55 219.5 217 60.4
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 3.3e-55 219.2 226 58.8
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 3.3e-55 219.2 231 60.2
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 3.3e-55 219.2 214 60.3
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 3.3e-55 219.2 204 61.8
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 3.3e-55 219.2 204 61.8
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 3.3e-55 219.2 204 61.8
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.7e-55 218.4 229 59.4
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 7.4e-55 218.0 226 58.0
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 1.7e-54 216.9 221 62.0
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 2.8e-54 216.1 235 59.6
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 2.8e-54 216.1 217 61.8
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 6.3e-54 214.9 218 58.3
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 6.3e-54 214.9 218 59.2
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 6.3e-54 214.9 270 52.2
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 6.3e-54 214.9 197 61.9
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 8.2e-54 214.5 230 57.4
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 8.2e-54 214.5 205 62.0
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.1e-53 214.2 228 57.5
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.1e-53 214.2 217 59.4
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 1.4e-53 213.8 229 59.0
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.8e-53 213.4 221 58.4
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 2.4e-53 213.0 196 64.8
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.1e-53 212.6 223 57.8
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 4.1e-53 212.2 206 61.7
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 4.1e-53 212.2 221 55.7
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 5.3e-53 211.8 231 57.1
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 5.3e-53 211.8 199 60.8
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 6.9e-53 211.5 167 68.3
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.5e-52 210.3 205 61.0
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.0e-52 209.9 227 57.3
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 2.6e-52 209.5 224 56.7
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 7.7e-52 208.0 236 56.4
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 1.3e-51 207.2 200 62.0
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.3e-51 207.2 223 57.0
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 3.8e-51 205.7 224 57.6
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 5.0e-51 205.3 223 56.5
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.0e-51 205.3 223 56.5
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.0e-51 205.3 223 56.5
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.5e-51 204.9 223 56.5
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 6.5e-51 204.9 231 55.0
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.1e-50 204.1 222 57.7
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 1.9e-50 203.4 179 62.6
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 9.4e-50 201.1 232 56.5
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 9.4e-50 201.1 199 58.8
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.2e-49 200.7 227 55.5
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.0e-48 197.6 218 57.3
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 3.0e-48 196.1 205 58.0
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 3.9e-48 195.7 231 55.4
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 3.9e-48 195.7 209 58.9
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 2.6e-47 193.0 211 54.5
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 5.3e-45 185.3 177 62.1
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.0e-44 183.3 132 74.2
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 4.5e-44 182.2 159 62.9
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 7.7e-44 181.4 221 52.0
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 1.3e-43 180.6 235 51.1
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 6.5e-43 178.3 176 58.0
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 8.5e-43 177.9 295 43.4
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.9e-42 176.8 212 50.5
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.5e-39 167.2 222 49.1
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 4.8e-38 162.2 231 47.6
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 6.3e-38 161.8 217 47.9
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 6.3e-38 161.8 217 47.9
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 2.4e-37 159.8 155 60.6
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.2e-36 157.5 165 56.4
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 1.6e-36 157.1 163 56.4
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.0e-35 154.5 165 54.5
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 5.0e-35 152.1 127 61.4
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 8.5e-35 151.4 236 48.3
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.6e-33 147.1 111 73.9
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.0e-32 144.4 81 90.1
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.8e-32 143.7 130 61.5
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 3.4e-31 139.4 129 59.7
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.3e-30 137.5 129 58.9
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 2.8e-30 136.3 220 44.1
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 1.6e-28 130.6 89 73.0
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.2e-26 122.5 199 41.7
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 8.0e-25 118.2 81 76.5
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.3e-24 116.7 175 42.3
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.6e-23 113.2 225 39.6
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.3e-22 110.9 146 45.9
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 6.3e-22 108.6 115 48.7
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 3.1e-21 106.3 138 45.7
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 7.7e-20 101.7 124 57.3
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 3.6e-17 92.8 194 36.6
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 8.9e-16 88.2 137 40.9
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.4e-14 82.0 56 75.0
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.4e-14 82.0 56 75.0
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 1.0e-11 74.7 54 70.4
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 4.7e-09 65.9 95 44.2
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 2.0e-07 60.5 40 72.5


User provided reference genes

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