Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033478 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 1.4e-33 145.6 67 100.0
CSS0001597 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 1.5e-32 142.1 67 98.5
SGA_v2.0_scaffold114G31867 Striga asiatica HOM05D004313 ORTHO05D005036 1.3e-18 95.9 53 86.8
MSTRG.4395 Avicennia marina HOM05D004313 ORTHO05D005036 5.3e-17 90.5 41 100.0
CAN.G628.58 Capsicum annuum HOM05D004313 ORTHO05D005036 5.3e-17 90.5 41 100.0
Haze_07414 Corylus avellana HOM05D004313 ORTHO05D005036 5.3e-17 90.5 42 95.2
Dinv07987 Davidia involucrata HOM05D004313 ORTHO05D005036 5.3e-17 90.5 41 100.0
Duzib084G0573 Durio zibethinus HOM05D004313 ORTHO05D005036 5.3e-17 90.5 41 100.0
Migut.D01890 Erythranthe guttata HOM05D004313 ORTHO05D005036 5.3e-17 90.5 41 100.0
Nitab4.5_0000003g0130 Nicotiana tabacum HOM05D004313 ORTHO05D005036 5.3e-17 90.5 41 100.0
Nitab4.5_0000758g0080 Nicotiana tabacum HOM05D004313 ORTHO05D005036 5.3e-17 90.5 41 100.0
Peaxi162Scf00689g00546 Petunia axillaris HOM05D004313 ORTHO05D005036 5.3e-17 90.5 41 100.0
SalBow3G4066 Salvia bowleyana HOM05D004313 ORTHO05D005036 5.3e-17 90.5 41 100.0
Thecc.03G071100 Theobroma cacao HOM05D004313 ORTHO05D005036 5.3e-17 90.5 41 100.0
unitig_21.g20456 Utricularia gibba HOM05D004313 ORTHO05D005036 5.3e-17 90.5 41 100.0
Cfa019038 Carpinus fangiana HOM05D004313 ORTHO05D005036 9.0e-17 89.7 41 97.6
Duzib205G0385 Durio zibethinus HOM05D004313 ORTHO05D005036 9.0e-17 89.7 41 97.6
Nn4g22972 Nelumbo nucifera HOM05D004313 ORTHO05D005036 1.2e-16 89.4 41 97.6
PSO591G0306 Papaver somniferum HOM05D004313 ORTHO05D005036 1.2e-16 89.4 41 97.6
PSO832G0682 Papaver somniferum HOM05D004313 ORTHO05D005036 1.2e-16 89.4 41 97.6
GSVIVG01007840001 Vitis vinifera HOM05D004313 ORTHO05D005036 1.2e-16 89.4 41 97.6
Actinidia04946 Actinidia chinensis HOM05D004313 ORTHO05D005036 1.5e-16 89.0 41 97.6
Actinidia37681 Actinidia chinensis HOM05D004313 ORTHO05D005036 1.5e-16 89.0 41 97.6
Dinv13117 Davidia involucrata HOM05D004313 ORTHO05D005036 1.5e-16 89.0 41 97.6
Hma1.2p1_0002F.1_g003010 Hydrangea macrophylla HOM05D004313 ORTHO05D005036 1.5e-16 89.0 41 97.6
Rhsim08G0163500 Rhododendron simsii HOM05D004313 ORTHO05D005036 1.5e-16 89.0 41 97.6
Solyc06g071200.3 Solanum lycopersicum HOM05D004313 ORTHO05D005036 1.5e-16 89.0 41 97.6
Sopen06g027510 Solanum pennellii HOM05D004313 ORTHO05D005036 1.5e-16 89.0 41 97.6
Aqoxy3G03179 Aquilegia oxysepala HOM05D004313 ORTHO05D005036 2.0e-16 88.6 41 95.1
Ciclev10018728m.g Citrus clementina HOM05D004313 ORTHO05D005036 2.0e-16 88.6 41 97.6
Eucgr.B00381 Eucalyptus grandis HOM05D004313 ORTHO05D005036 2.0e-16 88.6 41 97.6
AUR62008311 Chenopodium quinoa HOM05D004313 ORTHO05D005036 2.6e-16 88.2 41 95.1
AUR62021785 Chenopodium quinoa HOM05D004313 ORTHO05D005036 2.6e-16 88.2 41 95.1
Gohir.A07G071100 Gossypium hirsutum HOM05D004313 ORTHO05D005036 2.6e-16 88.2 41 97.6
Gorai.001G079800 Gossypium raimondii HOM05D004313 ORTHO05D005036 2.6e-16 88.2 41 97.6
ClCG06G016580 Citrullus lanatus HOM05D004313 ORTHO05D005036 3.4e-16 87.8 41 95.1
COL.COLO4_07633 Corchorus olitorius HOM05D004313 ORTHO05D005036 3.4e-16 87.8 41 95.1
MELO3C017136.2 Cucumis melo HOM05D004313 ORTHO05D005036 3.4e-16 87.8 41 95.1
CsaV3_1G001930 Cucumis sativus L. HOM05D004313 ORTHO05D005036 3.4e-16 87.8 41 95.1
TAR629G1960 Trochodendron aralioides HOM05D004313 ORTHO05D005036 3.4e-16 87.8 41 95.1
unitig_744.g24391 Utricularia gibba HOM05D004313 ORTHO05D005036 4.5e-16 87.4 41 97.6
CiPaw.11G034400 Carya illinoinensis HOM05D004313 ORTHO05D005036 5.8e-16 87.0 41 92.7
DCAR_031273 Daucus carota HOM05D004313 ORTHO05D005036 5.8e-16 87.0 41 90.2
MD06G1183500 Malus domestica HOM05D004313 ORTHO05D005036 5.8e-16 87.0 41 92.7
Prupe.5G182200 Prunus persica HOM05D004313 ORTHO05D005036 5.8e-16 87.0 41 92.7
Ah.11g045580 Amaranthus hybridus HOM05D004313 ORTHO05D005036 7.6e-16 86.7 41 92.7
EL10Ac5g10873 Beta vulgaris HOM05D004313 ORTHO05D005036 7.6e-16 86.7 41 92.7
Hund09391 Selenicereus undatus HOM05D004313 ORTHO05D005036 7.6e-16 86.7 41 92.7
Cc04_g16080 Coffea canephora HOM05D004313 ORTHO05D005036 9.9e-16 86.3 41 95.1
Gohir.D07G075600 Gossypium hirsutum HOM05D004313 ORTHO05D005036 9.9e-16 86.3 40 97.5
Sed0007676 Sechium edule HOM05D004313 ORTHO05D005036 9.9e-16 86.3 41 92.7
TWI60G1492 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 1.3e-15 85.9 41 90.2
arahy.Tifrunner.gnm1.ann1.PL6DWX Arachis hypogaea HOM05D004313 ORTHO05D005036 2.2e-15 85.1 41 92.7
arahy.Tifrunner.gnm1.ann1.ZX441X Arachis hypogaea HOM05D004313 ORTHO05D005036 2.2e-15 85.1 41 92.7
Cpa.g.sc203.11 Carica papaya HOM05D004313 ORTHO05D005036 2.2e-15 85.1 41 92.7
Glyma.05G031900 Glycine max HOM05D004313 ORTHO05D005036 2.2e-15 85.1 41 92.7
Glyma.17G094800 Glycine max HOM05D004313 ORTHO05D005036 2.2e-15 85.1 41 92.7
Lj9A456G24 Lonicera japonica HOM05D004313 ORTHO05D005036 2.2e-15 85.1 41 90.2
MD14G1189600 Malus domestica HOM05D004313 ORTHO05D005036 2.2e-15 85.1 41 90.2
TWI81G0241 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 2.2e-15 85.1 41 90.2
VMungo1215G1877 Vigna mungo HOM05D004313 ORTHO05D005036 2.2e-15 85.1 41 92.7
RcHm_v2.0_Chr7g0180041 Rosa chinensis HOM05D004313 ORTHO05D005036 3.8e-15 84.3 41 92.7
CiPaw.12G022100 Carya illinoinensis HOM05D004313 ORTHO05D005036 4.9e-15 84.0 41 90.2
Potri.012G073600 Populus trichocarpa HOM05D004313 ORTHO05D005036 4.9e-15 84.0 41 90.2
Ca_21869_v3 Cicer arietinum L. HOM05D004313 ORTHO05D005036 6.4e-15 83.6 41 90.2
Lalb_Chr07g0182441 Lupinus albus HOM05D004313 ORTHO05D005036 6.4e-15 83.6 41 90.2
Psat4g054720 Pisum sativum HOM05D004313 ORTHO05D005036 6.4e-15 83.6 41 90.2
TPR.G38443 Trifolium pratense HOM05D004313 ORTHO05D005036 6.4e-15 83.6 41 90.2
Lj4g0005973 Lotus japonicus HOM05D004313 ORTHO05D005036 8.4e-15 83.2 41 90.2
QL10p014006 Quercus lobata HOM05D004313 ORTHO05D005036 8.4e-15 83.2 41 87.8
Phvul.003G195400 Phaseolus vulgaris HOM05D004313 ORTHO05D005036 1.1e-14 82.8 41 90.2
Sc12g0005870 Simmondsia chinensis HOM05D004313 ORTHO05D005036 1.1e-14 82.8 41 87.8
TAR374G1555 Trochodendron aralioides HOM05D004313 ORTHO05D005036 1.1e-14 82.8 41 90.2
Potri.015G068600 Populus trichocarpa HOM05D004313 ORTHO05D005036 1.4e-14 82.4 41 87.8
Medtr4g107290 Medicago truncatula HOM05D004313 ORTHO05D005036 3.2e-14 81.3 41 87.8
HPP92_025605 Vanilla planifolia HOM05D004313 ORTHO05D005036 4.2e-14 80.9 41 87.8
FvH4_5g16030 Fragaria vesca HOM05D004313 ORTHO05D005036 5.5e-14 80.5 41 85.4
FAN18G3297 Fragaria x ananassa HOM05D004313 ORTHO05D005036 5.5e-14 80.5 41 85.4
CANSAT80G2445 Cannabis sativa HOM05D004313 ORTHO05D005036 9.3e-14 79.7 41 82.9
Lsat_1_v5_gn_4_106321 Lactuca sativa HOM05D004313 ORTHO05D005036 1.2e-13 79.3 41 85.4
BcaNung01388 Brassica carinata HOM05D004313 ORTHO05D005036 2.7e-13 78.2 41 82.9
Aa31LG11G1040 Aethionema arabicum HOM05D004313 ORTHO05D005036 3.5e-13 77.8 41 82.9
ECA232G1058 Erigeron canadensis HOM05D004313 ORTHO05D005036 3.5e-13 77.8 41 82.9
CARHR276380 Cardamine hirsuta HOM05D004313 ORTHO05D005036 4.6e-13 77.4 41 82.9
Thhalv10003602m.g Eutrema salsugineum HOM05D004313 ORTHO05D005036 4.6e-13 77.4 41 82.9
FAN04G0114 Fragaria x ananassa HOM05D004313 ORTHO05D005036 4.6e-13 77.4 41 82.9
FAN13G2316 Fragaria x ananassa HOM05D004313 ORTHO05D005036 4.6e-13 77.4 41 82.9
Sp2g25780 Schrenkiella parvula HOM05D004313 ORTHO05D005036 4.6e-13 77.4 41 82.9
THA.LOC104818250 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 4.6e-13 77.4 41 82.9
THA.LOC104819430 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 4.6e-13 77.4 41 82.9
AL8G39490 Arabidopsis lyrata HOM05D004313 ORTHO05D005036 7.9e-13 76.6 41 82.9
Carub.0008s2330 Capsella rubella HOM05D004313 ORTHO05D005036 7.9e-13 76.6 41 82.9
FAN08G2034 Fragaria x ananassa HOM05D004313 ORTHO05D005036 1.3e-12 75.9 41 80.5
HanXRQChr09g0271451 Helianthus annuus HOM05D004313 ORTHO05D005036 1.3e-12 75.9 41 82.9
AT5G62600 Arabidopsis thaliana HOM05D004313 ORTHO05D005036 1.8e-12 75.5 41 80.5
BcaC01g02491 Brassica carinata HOM05D004313 ORTHO05D005036 1.8e-12 75.5 41 80.5
C03p64200 Brassica napus HOM05D004313 ORTHO05D005036 1.8e-12 75.5 41 80.5
BolC3t18678H Brassica oleracea HOM05D004313 ORTHO05D005036 1.8e-12 75.5 41 80.5
CSS0019418 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 3.0e-12 74.7 41 80.5
ATR0322G074 Amborella trichopoda HOM05D004313 ORTHO05D005036 5.1e-12 73.9 40 80.0
BcaC04g23404 Brassica carinata HOM05D004313 ORTHO05D005036 5.1e-12 73.9 41 78.0
A06p29280 Brassica napus HOM05D004313 ORTHO05D005036 5.1e-12 73.9 41 78.0
BolC9t53779H Brassica oleracea HOM05D004313 ORTHO05D005036 5.1e-12 73.9 41 78.0
BraA06t25884Z Brassica rapa HOM05D004313 ORTHO05D005036 5.1e-12 73.9 41 78.0
SHI08465 Sapria himalayana HOM05D004313 ORTHO05D005036 5.6e-11 70.5 41 70.7
Zm00001eb045810 Zea mays HOM05D004313 ORTHO05D005036 2.1e-10 68.6 36 80.6
Zm00001eb221820 Zea mays HOM05D004313 ORTHO05D005036 2.1e-10 68.6 36 80.6
Os10g0477800 Oryza sativa ssp. japonica HOM05D004313 ORTHO05D005036 1.1e-09 66.2 43 74.4
Manes.06G098800 Manihot esculenta HOM05D004313 ORTHO05D005036 3.1e-09 64.7 41 70.7
SEGI_36637 Sequoiadendron giganteum HOM05D004313 ORTHO05D005036 2.6e-08 61.6 39 64.1
Pp3c11_11570 Physcomitrium patens HOM05D004313 ORTHO05D005036 6.5e-07 57.0 36 63.9
SMO144G0109 Selaginella moellendorffii HOM05D004313 ORTHO05D005036 6.5e-07 57.0 40 60.0
CBR_g24406 Chara braunii HOM05D004313 ORTHO05D005036 3.2e-06 54.7 36 61.1


User provided reference genes

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