Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033466 Camellia sinensis var. sinensis HOM05D029076 ORTHO05D113148 1.8e-105 386.0 196 100.0
CSS0047707 Camellia sinensis var. sinensis HOM05D029076 ORTHO05D109279 6.6e-76 287.7 151 97.4
CSS0020313 Camellia sinensis var. sinensis HOM05D029076 ORTHO05D112475 4.7e-66 255.0 136 97.8
CSS0030554 Camellia sinensis var. sinensis HOM05D029076 ORTHO05D110867 2.9e-31 139.4 157 56.1
Actinidia21443 Actinidia chinensis HOM05D000129 ORTHO05D000144 1.5e-11 73.9 51 66.7
Prupe.3G200900 Prunus persica HOM05D000129 ORTHO05D000144 2.8e-10 69.7 53 62.3
Dinv05350 Davidia involucrata HOM05D000129 ORTHO05D000144 1.2e-08 64.3 53 62.3
FAN05G3882 Fragaria x ananassa HOM05D000129 ORTHO05D000144 2.0e-08 63.5 53 54.7
MD17G1113500 Malus domestica HOM05D000129 ORTHO05D000144 3.4e-08 62.8 53 58.5
QL08p028503 Quercus lobata HOM05D000129 ORTHO05D000144 3.4e-08 62.8 53 58.5
FvH4_6g40950 Fragaria vesca HOM05D000129 ORTHO05D000144 7.7e-08 61.6 53 52.8
FAN09G0206 Fragaria x ananassa HOM05D000129 ORTHO05D000144 1.0e-07 61.2 53 52.8
FAN02G0439 Fragaria x ananassa HOM05D000129 ORTHO05D000144 1.7e-07 60.5 53 50.9
RcHm_v2.0_Chr2g0156561 Rosa chinensis HOM05D000129 ORTHO05D000144 2.2e-07 60.1 53 52.8
Dinv05833 Davidia involucrata HOM05D000129 ORTHO05D184851 2.9e-07 59.7 53 56.6
Medtr5g097270 Medicago truncatula HOM05D000129 ORTHO05D000144 2.9e-07 59.7 53 54.7
Dinv07872 Davidia involucrata HOM05D000129 ORTHO05D000144 3.8e-07 59.3 54 50.0
FAN14G2552 Fragaria x ananassa HOM05D000129 ORTHO05D000144 5.0e-07 58.9 52 51.9
RcHm_v2.0_Chr2g0156581 Rosa chinensis HOM05D000129 ORTHO05D000144 5.0e-07 58.9 56 48.2
MD09G1122800 Malus domestica HOM05D000129 ORTHO05D000144 6.5e-07 58.5 53 52.8
CiPaw.03G279100 Carya illinoinensis HOM05D000129 ORTHO05D000144 1.1e-06 57.8 53 50.9
Phvul.008G285000 Phaseolus vulgaris HOM05D000129 ORTHO05D000144 1.1e-06 57.8 52 53.8
Ciclev10014091m.g Citrus clementina HOM05D000129 ORTHO05D000144 1.9e-06 57.0 68 45.6
Haze_12683 Corylus avellana HOM05D000129 ORTHO05D000144 1.9e-06 57.0 53 54.7
TPR.G1306 Trifolium pratense HOM05D000129 ORTHO05D000144 1.9e-06 57.0 53 50.9
CANSAT64G2601 Cannabis sativa HOM05D000129 ORTHO05D000144 3.2e-06 56.2 50 50.0
Lalb_Chr10g0099711 Lupinus albus HOM05D000129 ORTHO05D000144 4.2e-06 55.8 53 50.9
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 5.5e-06 55.5 53 49.1
Dinv07869 Davidia involucrata HOM05D000129 ORTHO05D185572 7.2e-06 55.1 51 52.9
Sc21g0000740 Simmondsia chinensis HOM05D000129 ORTHO05D000144 7.2e-06 55.1 56 50.0
Haze_12685 Corylus avellana HOM05D000129 ORTHO05D000144 9.4e-06 54.7 55 49.1


User provided reference genes

Program Settings