Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1126.3 587 100.0
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1107.8 576 99.8
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 1.3e-308 1062.4 576 94.8
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 3.3e-304 1047.7 576 93.4
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 7.2e-304 1046.6 576 93.9
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 1.4e-302 1042.3 577 92.9
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 2.2e-300 1035.0 576 92.0
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 5.4e-299 1030.4 576 91.3
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 1.2e-298 1029.2 576 91.7
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 1.2e-298 1029.2 576 91.7
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 4.5e-298 1027.3 576 91.0
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 5.9e-298 1026.9 576 91.7
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 7.8e-298 1026.5 576 91.7
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 8.6e-297 1023.1 577 91.3
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 9.5e-296 1019.6 576 90.3
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 2.8e-295 1018.1 578 91.5
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 4.7e-295 1017.3 576 91.1
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 4.7e-295 1017.3 576 91.1
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 6.8e-294 1013.4 576 90.1
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 8.9e-294 1013.1 576 89.1
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 1.2e-293 1012.7 577 91.0
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 1.5e-293 1012.3 576 91.0
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 1.5e-293 1012.3 576 91.0
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 3.4e-293 1011.1 576 90.6
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 9.8e-293 1009.6 577 91.2
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 1.3e-292 1009.2 577 91.2
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 1.7e-292 1008.8 576 90.3
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 6.4e-292 1006.9 577 90.1
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 5.4e-291 1003.8 579 89.5
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 7.0e-291 1003.4 576 89.1
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 7.0e-291 1003.4 576 89.1
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 1.2e-290 1002.7 576 88.7
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 7.8e-290 1000.0 576 89.4
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 1.3e-289 999.2 578 90.0
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 1.7e-289 998.8 576 89.4
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 3.0e-289 998.0 576 89.6
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 8.6e-289 996.5 576 88.9
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 1.1e-288 996.1 576 88.5
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 4.3e-288 994.2 576 88.7
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 8.0e-287 989.9 576 89.1
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 1.1e-286 989.6 576 87.8
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 1.1e-286 989.6 576 88.4
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 3.1e-286 988.0 577 87.9
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 4.0e-286 987.6 577 87.3
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 4.0e-286 987.6 577 88.9
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 5.2e-286 987.3 576 88.2
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 5.2e-286 987.3 579 87.7
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 8.9e-286 986.5 578 87.4
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 1.2e-285 986.1 576 88.4
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 1.5e-285 985.7 576 88.0
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 2.0e-285 985.3 578 88.4
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 2.6e-285 984.9 576 88.2
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 3.4e-285 984.6 577 88.2
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 5.8e-285 983.8 576 87.8
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 5.8e-285 983.8 576 87.2
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 7.5e-285 983.4 578 88.2
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 7.5e-285 983.4 578 87.0
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 9.8e-285 983.0 576 88.2
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 1.3e-284 982.6 579 88.1
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 1.7e-284 982.2 579 87.9
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 1.7e-284 982.2 576 88.5
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 2.2e-284 981.9 576 88.0
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 2.2e-284 981.9 576 87.0
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 3.7e-284 981.1 576 87.0
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 4.9e-284 980.7 576 86.8
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 6.4e-284 980.3 580 87.9
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 6.4e-284 980.3 576 87.3
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 8.3e-284 979.9 578 87.0
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 8.3e-284 979.9 577 87.2
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 8.3e-284 979.9 580 86.9
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 8.3e-284 979.9 576 87.8
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 1.4e-283 979.2 576 87.8
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 1.9e-283 978.8 576 87.8
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 2.4e-283 978.4 579 87.4
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 4.1e-283 977.6 576 87.5
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 7.1e-283 976.9 578 87.0
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 9.2e-283 976.5 576 87.5
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 1.6e-282 975.7 577 87.2
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 1.6e-282 975.7 577 87.2
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 1.6e-282 975.7 577 87.2
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 1.6e-282 975.7 577 87.2
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 1.6e-282 975.7 577 87.2
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 4.6e-282 974.2 579 87.4
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 6.0e-282 973.8 576 87.0
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 3.0e-281 971.5 578 86.9
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 7.3e-280 966.8 576 86.3
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 2.8e-279 964.9 577 86.3
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 2.0e-277 958.7 574 85.7
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 2.0e-277 958.7 576 86.1
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 2.6e-277 958.4 576 86.8
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 1.7e-276 955.7 577 86.0
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 8.3e-276 953.4 576 85.6
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 5.4e-275 950.7 546 89.4
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 9.2e-275 949.9 579 85.8
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 3.5e-274 948.0 579 86.0
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 5.6e-272 940.6 577 85.3
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 1.5e-269 932.6 577 83.2
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 9.9e-269 929.9 576 82.6
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 7.1e-267 923.7 578 84.3
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 1.2e-266 922.9 576 84.5
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 1.3e-263 912.9 577 80.6
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.8e-263 911.8 579 83.4
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 9.3e-251 870.2 579 77.4
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 1.1e-240 836.6 576 75.0
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 2.2e-231 805.8 578 72.1
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 2.6e-221 772.3 585 68.2
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 9.1e-214 747.3 577 64.8
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 9.1e-214 747.3 577 65.2
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 3.5e-213 745.3 584 65.9
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 2.2e-212 742.7 601 63.4
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 1.9e-211 739.6 584 65.8
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 8.8e-201 704.1 406 89.2
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.2e-168 597.4 379 83.4
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 1.2e-168 597.4 352 86.6
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 1.2e-157 560.8 607 48.9
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 1.9e-155 553.5 357 81.8
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 6.9e-129 465.3 348 69.0
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 1.4e-113 414.5 378 56.1
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 3.5e-96 356.7 201 86.1
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 1.3e-95 354.8 199 86.9
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 2.3e-71 274.2 198 73.7
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 9.5e-62 242.3 168 79.8
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 2.1e-53 214.5 143 79.7
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 2.5e-46 191.0 117 87.2
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 1.2e-45 188.7 98 91.8
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 1.0e-39 169.1 87 95.4
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 1.4e-36 158.7 103 82.5
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 8.9e-36 156.0 109 78.0
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 2.6e-35 154.5 96 86.5
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 1.0e-31 142.5 74 87.8
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.2e-19 102.4 82 63.4
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 2.0e-19 101.7 82 64.6
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 3.4e-19 100.9 84 67.9
Manes.10G036656 Manihot esculenta HOM05D005231 ORTHO05D006387 3.9e-07 60.8 57 57.9


User provided reference genes

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