Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033446 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 7.3e-26 119.8 60 100.0
CSS0001388 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 6.2e-17 90.1 54 83.3
Manes.06G170901 Manihot esculenta HOM05D007991 ORTHO05D010158 1.4e-13 79.0 51 76.5
Ciclev10023629m.g Citrus clementina HOM05D007991 ORTHO05D010158 4.1e-13 77.4 54 72.2
Manes.06G170500 Manihot esculenta HOM05D007991 ORTHO05D010158 4.1e-13 77.4 51 74.5
Atru.chr8.1056 Acer truncatum HOM05D007991 ORTHO05D010158 5.4e-13 77.0 54 72.2
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 7.1e-13 76.6 55 69.1
Lsat_1_v5_gn_7_112301 Lactuca sativa HOM05D007991 ORTHO05D010158 9.2e-13 76.3 51 74.5
Medtr2g069650 Medicago truncatula HOM05D007991 ORTHO05D010158 9.2e-13 76.3 55 70.9
Aqoxy6G00820 Aquilegia oxysepala HOM05D007991 ORTHO05D010158 1.6e-12 75.5 57 64.9
Cpa.g.sc10.36 Carica papaya HOM05D007991 ORTHO05D010158 2.1e-12 75.1 55 69.1
Peaxi162Scf00452g00812 Petunia axillaris HOM05D007991 ORTHO05D010158 4.6e-12 73.9 55 63.6
GSVIVG01012568001 Vitis vinifera HOM05D007991 ORTHO05D010158 4.6e-12 73.9 54 70.4
GSVIVG01035227001 Vitis vinifera HOM05D007991 ORTHO05D010158 4.6e-12 73.9 54 70.4
MELO3C010561.2 Cucumis melo HOM05D007991 ORTHO05D010158 7.8e-12 73.2 55 65.5
Gohir.A11G002600 Gossypium hirsutum HOM05D007991 ORTHO05D010158 7.8e-12 73.2 48 77.1
Gorai.007G003200 Gossypium raimondii HOM05D007991 ORTHO05D010158 7.8e-12 73.2 48 77.1
Ah.07g206310 Amaranthus hybridus HOM05D007991 ORTHO05D010158 1.0e-11 72.8 55 61.8
Nn7g37867 Nelumbo nucifera HOM05D007991 ORTHO05D010158 1.0e-11 72.8 54 66.7
MBI02_g12653_MAGBIO Magnolia biondii HOM05D007991 ORTHO05D010158 1.3e-11 72.4 58 62.1
Prupe.4G140900 Prunus persica HOM05D007991 ORTHO05D010158 1.7e-11 72.0 55 63.6
ClCG11G016360 Citrullus lanatus HOM05D007991 ORTHO05D010158 3.0e-11 71.2 55 65.5
ClCG11G016370 Citrullus lanatus HOM05D007991 ORTHO05D010158 3.0e-11 71.2 55 65.5
ECA236G0423 Erigeron canadensis HOM05D007991 ORTHO05D010158 3.0e-11 71.2 55 63.6
PGR042G3415 Punica granatum HOM05D007991 ORTHO05D010158 3.0e-11 71.2 58 58.6
Solyc07g066400.1 Solanum lycopersicum HOM05D007991 ORTHO05D010158 3.0e-11 71.2 48 72.9
TPR.G9765 Trifolium pratense HOM05D007991 ORTHO05D010158 3.0e-11 71.2 55 65.5
BcaC09g48284 Brassica carinata HOM05D007991 ORTHO05D010158 3.9e-11 70.9 57 61.4
C01p52180 Brassica napus HOM05D007991 ORTHO05D010158 3.9e-11 70.9 57 61.4
BolC1t05158H Brassica oleracea HOM05D007991 ORTHO05D010158 3.9e-11 70.9 57 61.4
BraA01t04089Z Brassica rapa HOM05D007991 ORTHO05D010158 3.9e-11 70.9 57 61.4
CAN.G943.33 Capsicum annuum HOM05D007991 ORTHO05D010158 5.1e-11 70.5 51 64.7
TWI39G0184 Tripterygium wilfordii HOM05D007991 ORTHO05D010158 5.1e-11 70.5 51 68.6
BcaB04g21024 Brassica carinata HOM05D007991 ORTHO05D010158 6.6e-11 70.1 57 59.6
Ca_03685_v3 Cicer arietinum L. HOM05D007991 ORTHO05D010158 6.6e-11 70.1 56 67.9
Lalb_Chr19g0133391 Lupinus albus HOM05D007991 ORTHO05D010158 6.6e-11 70.1 55 61.8
Sopen07g034570 Solanum pennellii HOM05D007991 ORTHO05D010158 8.6e-11 69.7 48 72.9
Gohir.D11G002200 Gossypium hirsutum HOM05D007991 ORTHO05D010158 1.1e-10 69.3 48 72.9
EL10Ac4g08566 Beta vulgaris HOM05D007991 ORTHO05D010158 1.5e-10 68.9 55 58.2
PGSC0003DMG400022239 Solanum tuberosum HOM05D007991 ORTHO05D010158 1.5e-10 68.9 48 70.8
Psat1g011440 Pisum sativum HOM05D007991 ORTHO05D010158 1.9e-10 68.6 55 63.6
AT3G12960 Arabidopsis thaliana HOM05D007991 ORTHO05D010158 2.5e-10 68.2 57 59.6
CiPaw.04G012700 Carya illinoinensis HOM05D007991 ORTHO05D010158 2.5e-10 68.2 55 60.0
FAN11G2864 Fragaria x ananassa HOM05D007991 ORTHO05D010158 2.5e-10 68.2 55 60.0
FAN21G1902 Fragaria x ananassa HOM05D007991 ORTHO05D010158 2.5e-10 68.2 55 60.0
PSO675G0275 Papaver somniferum HOM05D007991 ORTHO05D010158 2.5e-10 68.2 57 57.9
Aa31LG8G190 Aethionema arabicum HOM05D007991 ORTHO05D010158 3.3e-10 67.8 58 56.9
FAN16G1552 Fragaria x ananassa HOM05D007991 ORTHO05D010158 3.3e-10 67.8 55 60.0
HanXRQChr11g0334671 Helianthus annuus HOM05D007991 ORTHO05D010158 4.3e-10 67.4 54 61.1
RcHm_v2.0_Chr5g0026701 Rosa chinensis HOM05D007991 ORTHO05D010158 4.3e-10 67.4 55 60.0
Sc16g0005380 Simmondsia chinensis HOM05D007991 ORTHO05D010158 4.3e-10 67.4 55 58.2
Sp3g11110 Schrenkiella parvula HOM05D007991 ORTHO05D010158 5.6e-10 67.0 57 59.6
QL04p074011 Quercus lobata HOM05D007991 ORTHO05D010158 7.3e-10 66.6 48 70.8
SalBow2G0434 Salvia bowleyana HOM05D007991 ORTHO05D010158 7.3e-10 66.6 55 61.8
AL3G24640 Arabidopsis lyrata HOM05D007991 ORTHO05D010158 9.5e-10 66.2 57 57.9
FAN25G2658 Fragaria x ananassa HOM05D007991 ORTHO05D010158 1.2e-09 65.9 55 58.2
Lalb_Chr03g0031611 Lupinus albus HOM05D007991 ORTHO05D010158 1.2e-09 65.9 51 62.7
Phvul.005G056100 Phaseolus vulgaris HOM05D007991 ORTHO05D010158 1.6e-09 65.5 55 58.2
Thhalv10022193m.g Eutrema salsugineum HOM05D007991 ORTHO05D010158 2.1e-09 65.1 57 56.1
Glyma.08G172800 Glycine max HOM05D007991 ORTHO05D010158 2.1e-09 65.1 55 58.2
unitig_8.g4768 Utricularia gibba HOM05D007991 ORTHO05D010158 2.1e-09 65.1 54 63.0
CANSAT80G1088 Cannabis sativa HOM05D007991 ORTHO05D010158 3.6e-09 64.3 58 58.6
Lj3g0014492 Lotus japonicus HOM05D007991 ORTHO05D010158 3.6e-09 64.3 55 58.2
CARHR087490 Cardamine hirsuta HOM05D007991 ORTHO05D010158 4.7e-09 63.9 57 59.6
COL.COLO4_04148 Corchorus olitorius HOM05D007991 ORTHO05D010158 6.2e-09 63.5 51 60.8
COL.COLO4_28875 Corchorus olitorius HOM05D007991 ORTHO05D010158 6.2e-09 63.5 51 60.8
Duzib205G1447 Durio zibethinus HOM05D007991 ORTHO05D010158 6.2e-09 63.5 51 60.8
MD05G1219200 Malus domestica HOM05D007991 ORTHO05D010158 6.2e-09 63.5 55 56.4
Carub.0003s1230 Capsella rubella HOM05D007991 ORTHO05D010158 8.1e-09 63.2 57 54.4
Cfa019429 Carpinus fangiana HOM05D007991 ORTHO05D010158 8.1e-09 63.2 48 64.6
Sed0025657 Sechium edule HOM05D007991 ORTHO05D010158 5.2e-08 60.5 48 66.7
Nn4g23994 Nelumbo nucifera HOM05D007991 ORTHO05D010158 3.4e-07 57.8 46 65.2
Nitab4.5_0008437g0010 Nicotiana tabacum HOM05D007991 ORTHO05D010158 4.4e-07 57.4 48 64.6
Os08g0104400 Oryza sativa ssp. japonica HOM05D007991 ORTHO05D010158 9.9e-07 56.2 47 59.6


User provided reference genes

Program Settings