Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 2.7e-32 141.4 70 100.0
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 5.7e-22 107.1 74 74.3
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 2.2e-21 105.1 74 73.0
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 8.2e-21 103.2 76 73.7
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 2.4e-20 101.7 75 73.3
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 4.5e-19 97.4 72 70.8
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 5.9e-19 97.1 70 72.9
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 5.9e-19 97.1 72 70.8
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 5.9e-19 97.1 74 68.9
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 2.9e-18 94.7 72 69.4
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 3.8e-18 94.4 72 69.4
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 5.0e-18 94.0 65 73.8
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 1.1e-17 92.8 73 68.5
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 1.1e-17 92.8 72 68.1
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 1.4e-17 92.4 68 69.1
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 1.9e-17 92.0 76 67.1
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 1.9e-17 92.0 77 63.6
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 3.2e-17 91.3 72 66.7
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 3.2e-17 91.3 72 66.7
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 4.2e-17 90.9 71 69.0
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 5.5e-17 90.5 72 65.3
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 2.1e-16 88.6 56 82.1
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 2.1e-16 88.6 67 65.7
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 2.1e-16 88.6 69 65.2
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 2.7e-16 88.2 66 65.2
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 3.6e-16 87.8 67 65.7
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 4.7e-16 87.4 71 62.0
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 8.0e-16 86.7 67 62.7
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 1.0e-15 86.3 67 64.2
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 1.4e-15 85.9 65 63.1
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 1.8e-15 85.5 68 61.8
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 1.8e-15 85.5 68 61.8
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 1.8e-15 85.5 71 60.6
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 1.8e-15 85.5 67 65.7
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 2.3e-15 85.1 69 63.8
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 3.0e-15 84.7 71 64.8
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 3.9e-15 84.3 58 75.9
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 5.2e-15 84.0 76 59.2
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 5.2e-15 84.0 66 57.6
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 8.8e-15 83.2 71 60.6
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 8.8e-15 83.2 69 62.3
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 8.8e-15 83.2 81 58.0
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 8.8e-15 83.2 65 66.2
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 1.1e-14 82.8 73 57.5
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 1.5e-14 82.4 69 62.3
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.5e-14 82.4 63 65.1
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.5e-14 82.4 63 65.1
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 1.5e-14 82.4 76 52.6
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 2.0e-14 82.0 66 60.6
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 2.6e-14 81.6 66 59.1
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 3.3e-14 81.3 69 60.9
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 3.3e-14 81.3 69 60.9
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 4.4e-14 80.9 69 60.9
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 4.4e-14 80.9 69 60.9
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 4.4e-14 80.9 69 60.9
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 4.4e-14 80.9 63 61.9
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 4.4e-14 80.9 65 64.6
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 5.7e-14 80.5 70 61.4
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 7.4e-14 80.1 63 63.5
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 7.4e-14 80.1 66 59.1
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 1.3e-13 79.3 60 66.7
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 1.3e-13 79.3 50 74.0
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 1.7e-13 79.0 65 61.5
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 2.2e-13 78.6 70 58.6
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 2.2e-13 78.6 67 59.7
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 4.8e-13 77.4 60 63.3
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 8.2e-13 76.6 50 70.0
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.1e-12 76.3 60 63.3
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 1.8e-12 75.5 63 58.7
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 4.1e-12 74.3 68 55.9
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 2.0e-11 72.0 49 75.5
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 3.5e-11 71.2 69 55.1
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 4.5e-11 70.9 63 61.9
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 5.9e-11 70.5 63 55.6
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 2.2e-10 68.6 46 67.4
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 5.0e-10 67.4 66 56.1
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.9e-09 65.5 72 47.2
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 3.2e-09 64.7 40 67.5
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 3.2e-09 64.7 72 47.2
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 3.2e-09 64.7 72 47.2
Gohir.D09G144800 Gossypium hirsutum HOM05D009309 ORTHO05D011491 6.1e-08 60.5 63 55.6
Gorai.006G166100 Gossypium raimondii HOM05D009309 ORTHO05D011491 6.1e-08 60.5 63 55.6
Nn7g37890 Nelumbo nucifera HOM05D021221 ORTHO05D025179 2.0e-06 55.5 93 44.1
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 2.6e-06 55.1 48 58.3
Migut.J00541 Erythranthe guttata HOM05D009309 ORTHO05D011491 3.3e-06 54.7 62 50.0
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 3.3e-06 54.7 48 60.4
Gohir.A09G148950 Gossypium hirsutum HOM05D009309 ORTHO05D011491 4.4e-06 54.3 63 52.4
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 4.4e-06 54.3 45 48.9
Manes.08G008300 Manihot esculenta HOM05D009309 ORTHO05D011491 5.7e-06 53.9 63 44.4
Prupe.6G235500 Prunus persica HOM05D009309 ORTHO05D011491 7.5e-06 53.5 48 52.1
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 9.7e-06 53.1 47 59.6


User provided reference genes

Program Settings