Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.2e-253 878.6 472 100.0
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 4.1e-252 874.4 472 99.6
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.7e-184 649.8 470 71.7
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 2.2e-181 639.4 464 71.3
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 8.3e-176 620.9 464 68.1
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 4.9e-160 568.5 536 59.1
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 7.8e-158 561.2 481 64.0
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 7.3e-156 554.7 475 64.0
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.2e-155 553.9 479 59.3
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 1.8e-154 550.1 472 60.2
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 5.2e-154 548.5 476 60.1
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 2.0e-153 546.6 468 60.7
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 8.3e-152 541.2 469 59.9
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 1.1e-151 540.8 471 60.3
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.6e-150 537.0 471 59.0
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 6.0e-150 535.0 468 59.4
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 6.0e-150 535.0 479 59.3
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 7.8e-150 534.6 470 59.1
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 1.3e-149 533.9 477 60.0
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 3.0e-149 532.7 471 61.6
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 5.0e-149 531.9 479 59.1
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 3.3e-148 529.3 467 58.5
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 5.6e-148 528.5 469 57.8
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 8.1e-147 524.6 602 51.8
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 5.2e-146 521.9 467 58.7
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 1.5e-145 520.4 464 58.4
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 5.8e-145 518.5 467 57.6
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 9.9e-145 517.7 467 58.2
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 6.4e-144 515.0 482 55.8
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 8.3e-144 514.6 467 58.5
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 4.1e-143 512.3 472 61.2
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 3.9e-141 505.8 453 58.5
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 6.6e-141 505.0 467 56.7
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.2e-139 500.7 463 56.4
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 1.6e-139 500.4 470 58.1
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 8.1e-139 498.0 466 57.7
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 1.1e-138 497.7 467 55.7
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 1.4e-138 497.3 473 57.3
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 6.8e-138 495.0 467 55.7
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 1.5e-137 493.8 469 54.2
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.5e-137 493.8 469 56.1
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 2.0e-137 493.4 474 53.8
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.3e-136 490.7 474 56.3
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 1.4e-135 487.3 467 54.8
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.2e-135 486.1 465 57.0
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 7.1e-135 485.0 480 52.7
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 1.2e-134 484.2 339 71.7
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.2e-134 484.2 470 54.5
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 1.2e-134 484.2 490 52.2
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 3.5e-134 482.6 460 57.6
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 3.5e-134 482.6 461 57.0
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 6.0e-134 481.9 471 53.5
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 1.3e-133 480.7 460 55.0
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.7e-133 480.3 474 55.3
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.3e-133 479.9 474 55.7
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 3.0e-133 479.6 471 55.0
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 3.0e-133 479.6 460 56.5
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.9e-133 479.2 460 56.7
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.1e-133 478.8 467 53.5
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 8.7e-133 478.0 467 54.4
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 8.7e-133 478.0 467 53.5
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 1.5e-132 477.2 451 55.0
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 1.9e-132 476.9 462 53.9
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.5e-132 476.5 467 53.3
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 3.3e-132 476.1 451 55.0
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 8.1e-131 471.5 441 54.6
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 1.8e-130 470.3 467 52.7
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.6e-129 466.5 466 52.4
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 3.4e-129 466.1 466 52.4
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 5.8e-129 465.3 462 52.2
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 1.7e-128 463.8 473 51.8
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.7e-128 463.8 462 51.9
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 2.9e-128 463.0 466 52.4
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 1.1e-127 461.1 473 53.9
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.4e-127 459.9 462 51.5
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 7.1e-127 458.4 486 55.8
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 9.3e-127 458.0 466 52.1
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 1.2e-126 457.6 470 51.5
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.6e-126 457.2 429 56.9
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 2.7e-126 456.4 475 53.7
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 3.5e-126 456.1 469 53.1
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 6.0e-126 455.3 470 53.4
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.7e-125 453.8 460 52.6
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.1e-125 452.2 468 52.1
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 6.6e-125 451.8 471 52.0
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 8.7e-125 451.4 466 52.6
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 1.5e-124 450.7 600 42.5
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.9e-124 450.3 466 51.7
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.8e-123 445.7 455 54.1
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 3.8e-120 436.0 468 51.7
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 8.4e-120 434.9 471 51.8
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 2.4e-119 433.3 471 52.0
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 4.2e-119 432.6 471 51.6
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 4.2e-119 432.6 470 50.9
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 5.4e-119 432.2 473 54.3
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.1e-115 420.2 450 50.4
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 1.5e-113 414.1 468 48.3
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 6.4e-112 408.7 417 52.8
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 1.1e-111 407.9 439 52.8
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 2.4e-111 406.8 471 49.5
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 7.1e-111 405.2 450 53.1
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 7.9e-110 401.7 470 46.6
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 3.0e-109 399.8 468 49.8
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 4.3e-108 396.0 462 50.6
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 5.6e-108 395.6 379 55.4
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 9.6e-108 394.8 468 49.1
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 6.2e-107 392.1 461 46.6
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 3.1e-106 389.8 461 48.2
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 1.3e-104 384.4 469 44.6
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 4.9e-104 382.5 471 47.8
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 5.5e-103 379.0 468 45.3
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 4.1e-98 362.8 296 60.8
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 2.0e-97 360.5 302 59.9
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 1.0e-96 358.2 267 64.4
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.5e-95 353.6 300 59.3
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.5e-95 353.6 300 59.3
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 2.0e-92 344.0 443 44.5
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.6e-89 333.6 359 54.0
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 2.6e-89 333.6 262 64.1
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 3.4e-89 333.2 264 64.4
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 2.8e-83 313.5 460 42.2
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 7.7e-81 305.4 461 39.3
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 9.7e-76 288.5 442 38.9
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 8.5e-72 275.4 433 40.4
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 6.7e-69 265.8 456 38.4
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 4.7e-54 216.5 136 77.2
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 4.7e-54 216.5 223 52.5
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 4.0e-53 213.4 223 51.6
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.0e-48 198.7 465 31.0
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 1.3e-48 198.4 466 35.6
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 3.9e-48 196.8 479 33.0
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 8.6e-48 195.7 215 44.7
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 4.7e-46 189.9 484 31.4
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 2.3e-45 187.6 251 42.2
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.5e-44 184.9 234 47.0
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 9.8e-44 182.2 331 37.5
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 4.9e-43 179.9 327 37.6
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 8.0e-38 162.5 159 59.1
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 1.5e-31 141.7 157 50.3
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 1.5e-31 141.7 157 50.3
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 2.5e-31 141.0 469 26.4
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 8.9e-29 132.5 233 34.3
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.5e-28 131.7 106 58.5
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 1.3e-27 128.6 233 47.6
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 6.4e-27 126.3 168 44.6
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 1.1e-26 125.6 76 72.4
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 1.9e-26 124.8 451 28.2
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.6e-24 116.3 167 46.1
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.6e-23 113.2 170 51.8
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 8.1e-22 109.4 99 55.6
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.8e-21 108.2 161 46.0
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.8e-21 108.2 181 32.0
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.2e-20 105.5 141 47.5
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 7.6e-20 102.8 244 29.5
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 3.2e-18 97.4 251 29.5
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 1.1e-13 82.4 119 37.0
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.0e-13 79.3 67 61.2
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.4e-12 77.4 67 59.7
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.6e-12 76.3 67 58.2
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.9e-12 75.9 66 60.6
Psat2g063600 Pisum sativum HOM05D004355 ORTHO05D005228 3.2e-10 70.9 65 50.8


User provided reference genes

Program Settings