Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033280 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 0.0e+00 1213.4 651 100.0
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 0.0e+00 1187.9 653 98.3
Actinidia39131 Actinidia chinensis HOM05D008208 ORTHO05D010143 5.0e-104 382.9 755 44.6
Actinidia09010 Actinidia chinensis HOM05D008208 ORTHO05D010143 5.3e-98 362.8 725 43.9
vmacro17009 Vaccinium macrocarpon HOM05D008208 ORTHO05D010143 6.6e-80 302.8 700 40.4
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 1.8e-69 268.1 319 56.4
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 2.0e-68 264.6 768 36.1
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 3.7e-67 260.4 760 35.0
TAR624G0194 Trochodendron aralioides HOM05D008208 ORTHO05D010143 4.9e-67 260.0 715 35.5
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 6.0e-65 253.1 758 34.6
Lj9A514T51 Lonicera japonica HOM05D008208 ORTHO05D010143 8.1e-62 242.7 689 36.1
QL05p019674 Quercus lobata HOM05D008208 ORTHO05D010143 5.1e-56 223.4 778 33.0
Lj5A52T19 Lonicera japonica HOM05D008208 ORTHO05D010143 8.6e-56 222.6 693 34.2
CiPaw.02G145300 Carya illinoinensis HOM05D008208 ORTHO05D010143 3.6e-54 217.2 740 33.4
Manes.11G032600 Manihot esculenta HOM05D008208 ORTHO05D010143 1.2e-52 212.2 706 33.0
Oeu002526.1 Olea europaea HOM05D008208 ORTHO05D010143 9.0e-45 186.0 721 32.2
Nn8g39048 Nelumbo nucifera HOM05D008208 ORTHO05D010143 3.8e-43 180.6 722 30.7
Ciclev10025127m.g Citrus clementina HOM05D008208 ORTHO05D010143 4.9e-43 180.3 721 33.4
MSTRG.11020 Avicennia marina HOM05D008208 ORTHO05D010143 1.2e-41 175.6 713 31.0
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 1.6e-38 165.2 822 29.1
Prupe.3G057400 Prunus persica HOM05D008208 ORTHO05D010143 4.8e-38 163.7 857 29.4
PGSC0003DMG400002607 Solanum tuberosum HOM05D008208 ORTHO05D010143 6.2e-38 163.3 679 31.1
MD17G1181700 Malus domestica HOM05D008208 ORTHO05D010143 8.1e-38 162.9 749 29.9
Dinv30428 Davidia involucrata HOM05D008208 ORTHO05D010143 5.3e-37 160.2 370 41.6
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 7.6e-36 156.4 711 30.5
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 1.3e-35 155.6 894 26.8
Nn6g35343 Nelumbo nucifera HOM05D008208 ORTHO05D010143 1.4e-34 152.1 855 26.8
Nitab4.5_0006022g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 1.4e-34 152.1 724 30.5
Peaxi162Scf00038g01129 Petunia axillaris HOM05D008208 ORTHO05D010143 1.4e-34 152.1 745 30.3
Sopen03g039910 Solanum pennellii HOM05D008208 ORTHO05D010143 1.2e-33 149.1 694 30.5
Nitab4.5_0004969g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 4.3e-31 140.6 758 29.6
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 7.4e-31 139.8 724 31.1
Solyc03g121080.3 Solanum lycopersicum HOM05D008208 ORTHO05D010143 9.6e-31 139.4 710 31.4
Sabra01G0150900 Salix brachista HOM05D008208 ORTHO05D010143 8.1e-30 136.3 657 31.4
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 9.0e-29 132.9 872 26.5
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 1.7e-27 128.6 849 26.3
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 2.9e-27 127.9 709 28.8
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 4.9e-27 127.1 749 29.2
COL.COLO4_30526 Corchorus olitorius HOM05D008208 ORTHO05D010143 7.1e-26 123.2 669 29.6
Gohir.D10G066500 Gossypium hirsutum HOM05D008208 ORTHO05D010143 1.2e-25 122.5 741 29.1
Thecc.06G101100 Theobroma cacao HOM05D008208 ORTHO05D010143 3.9e-24 117.5 811 27.1
CANSAT56G0900 Cannabis sativa HOM05D008208 ORTHO05D010143 7.4e-23 113.2 691 28.4
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 1.6e-22 112.1 750 28.4
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 3.7e-22 110.9 309 35.6
RcHm_v2.0_Chr2g0140801 Rosa chinensis HOM05D008208 ORTHO05D010143 3.7e-22 110.9 197 43.7
DCAR_023083 Daucus carota HOM05D008208 ORTHO05D010143 3.1e-21 107.8 599 28.2
DCAR_016182 Daucus carota HOM05D002915 ORTHO05D003004 1.7e-19 102.1 755 27.2
Sc10g0007610 Simmondsia chinensis HOM05D008208 ORTHO05D010143 2.9e-19 101.3 662 27.6
Eucgr.F03082 Eucalyptus grandis HOM05D008208 ORTHO05D010143 4.9e-19 100.5 694 26.9
Potri.001G190601 Populus trichocarpa HOM05D008208 ORTHO05D010143 4.9e-19 100.5 589 27.8
ClCG07G013360 Citrullus lanatus HOM05D026900 ORTHO05D010143 2.3e-16 91.7 674 26.9
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 3.9e-16 90.9 749 27.1
Lsat_1_v5_gn_5_134320 Lactuca sativa HOM05D008208 ORTHO05D010143 1.9e-15 88.6 662 24.5
Sed0025504 Sechium edule HOM05D026900 ORTHO05D010143 2.5e-15 88.2 706 26.3
MELO3C013005.2 Cucumis melo HOM05D026900 ORTHO05D010143 3.7e-14 84.3 641 27.6
HanXRQChr09g0275691 Helianthus annuus HOM05D008208 ORTHO05D010143 3.7e-14 84.3 662 26.1
SalBow2G3317 Salvia bowleyana HOM05D008208 ORTHO05D010143 3.1e-13 81.3 762 27.3
Hund07613 Selenicereus undatus HOM05D008208 ORTHO05D010143 6.9e-13 80.1 712 27.7
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 1.2e-12 79.3 764 26.6
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 3.4e-12 77.8 707 25.6
SGA_v2.0_scaffold265G46060 Striga asiatica HOM05D008208 ORTHO05D010143 4.5e-12 77.4 777 24.5
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 1.1e-10 72.8 238 31.9
Migut.I00959 Erythranthe guttata HOM05D008208 ORTHO05D010143 1.9e-10 72.0 392 31.4
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.9e-10 72.0 230 31.3
EL10Ac9g21199 Beta vulgaris HOM05D008208 ORTHO05D010143 5.5e-10 70.5 473 26.6
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 1.2e-09 69.3 213 35.2
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 1.2e-09 69.3 229 31.9
Zm00001eb217550 Zea mays HOM05D058439 ORTHO05D005166 1.2e-09 69.3 148 37.8
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.7e-09 68.2 199 34.7
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.7e-09 68.2 234 31.2
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 2.7e-09 68.2 225 32.4
Aqoxy1G02129 Aquilegia oxysepala HOM05D057169 ORTHO05D010143 3.6e-09 67.8 171 35.7
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 6.1e-09 67.0 236 30.5
ECA232G2142 Erigeron canadensis HOM05D008208 ORTHO05D010143 7.9e-09 66.6 680 24.7
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 1.0e-08 66.2 220 30.5
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 1.4e-08 65.9 202 33.2
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 2.3e-08 65.1 214 31.3
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 2.3e-08 65.1 207 32.9
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 2.3e-08 65.1 197 32.5
CDE02G2770 Ceratophyllum demersum HOM05D046919 ORTHO05D043903 5.1e-08 63.9 181 33.7
CDE05G0720 Ceratophyllum demersum HOM05D008208 ORTHO05D010143 5.1e-08 63.9 186 34.4
CsaV3_3G023500 Cucumis sativus L. HOM05D026900 ORTHO05D010143 5.1e-08 63.9 721 24.0
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 6.7e-08 63.5 254 29.9
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 8.8e-08 63.2 164 31.7
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 1.1e-07 62.8 199 29.6
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.5e-07 62.4 207 31.4
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 1.5e-07 62.4 286 30.1
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 2.0e-07 62.0 215 30.7
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 2.0e-07 62.0 231 31.6
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 2.5e-07 61.6 236 30.5
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 2.5e-07 61.6 210 30.5
RcHm_v2.0_Chr2g0140811 Rosa chinensis HOM05D008208 ORTHO05D010143 3.3e-07 61.2 405 24.7
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 4.3e-07 60.8 237 28.3
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 5.7e-07 60.5 155 36.1
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 5.7e-07 60.5 158 35.4
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 7.4e-07 60.1 238 28.6
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 9.7e-07 59.7 274 28.1
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 9.7e-07 59.7 313 28.1
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.3e-06 59.3 152 32.2
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.7e-06 58.9 193 29.0
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.2e-06 58.5 265 27.5
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 2.8e-06 58.2 159 31.4
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 2.8e-06 58.2 220 29.1
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 3.7e-06 57.8 222 28.8
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 3.7e-06 57.8 275 27.6
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 3.7e-06 57.8 275 27.6
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 3.7e-06 57.8 213 30.0
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 4.8e-06 57.4 761 24.4
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 8.2e-06 56.6 225 28.0


User provided reference genes

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