Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.6e-111 403.7 206 100.0
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.9e-103 378.3 206 93.7
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.2e-85 317.8 206 81.6
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 4.0e-84 315.1 203 78.3
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 2.9e-82 308.9 193 80.8
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 2.5e-70 269.2 163 81.0
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 1.3e-69 266.9 206 66.5
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.4e-67 258.8 204 63.7
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.0e-66 257.3 204 63.2
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 6.5e-66 254.6 206 62.6
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 1.0e-63 247.3 183 68.9
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 1.5e-62 243.4 207 61.4
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 2.6e-62 242.7 206 60.2
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 4.4e-62 241.9 216 60.2
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 5.7e-62 241.5 217 58.1
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 1.3e-61 240.4 205 60.5
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 1.7e-61 240.0 207 59.9
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 3.1e-60 235.7 205 59.5
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 1.2e-59 233.8 222 56.8
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 7.7e-59 231.1 205 58.5
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 7.7e-59 231.1 205 60.0
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 5.0e-58 228.4 206 59.7
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.4e-57 226.9 205 57.1
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 2.5e-57 226.1 206 58.7
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 4.2e-57 225.3 205 57.6
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 4.2e-57 225.3 206 55.8
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 5.5e-57 224.9 208 56.7
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 1.2e-56 223.8 205 56.1
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 2.7e-56 222.6 206 56.8
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.3e-55 219.5 207 56.5
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 6.7e-55 218.0 206 56.3
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 8.8e-55 217.6 207 53.6
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 3.3e-54 215.7 205 56.6
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 3.7e-53 212.2 207 56.0
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 6.3e-53 211.5 205 55.1
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 8.2e-53 211.1 206 57.3
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 1.1e-52 210.7 205 54.6
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 5.3e-52 208.4 205 54.6
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 7.0e-52 208.0 208 53.8
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 1.0e-50 204.1 207 52.2
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 2.2e-50 203.0 212 54.2
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 2.9e-50 202.6 157 63.7
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 8.5e-50 201.1 209 54.1
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 1.1e-49 200.7 206 51.9
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 4.2e-49 198.7 204 52.0
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 2.1e-48 196.4 210 51.4
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 4.7e-48 195.3 204 50.5
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 6.1e-48 194.9 204 51.5
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 1.4e-47 193.7 215 47.4
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 3.0e-47 192.6 218 48.2
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 5.2e-47 191.8 215 47.4
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 1.2e-46 190.7 203 51.2
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 2.6e-46 189.5 204 50.0
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 9.7e-46 187.6 206 51.0
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.3e-45 187.2 221 48.4
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 1.7e-45 186.8 218 50.0
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 2.8e-45 186.0 211 49.8
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 4.8e-45 185.3 218 51.4
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 6.3e-45 184.9 221 47.1
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 2.4e-44 183.0 217 50.2
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.4e-44 183.0 164 56.7
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 5.3e-44 181.8 212 48.6
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 2.0e-43 179.9 211 47.9
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 5.9e-43 178.3 218 47.2
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 1.7e-42 176.8 207 48.3
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 1.7e-42 176.8 219 45.2
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 8.5e-42 174.5 210 47.6
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 1.5e-41 173.7 218 45.4
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 2.5e-41 172.9 214 48.1
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 2.5e-41 172.9 205 48.8
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.2e-41 172.6 87 95.4
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 4.2e-41 172.2 219 46.6
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 9.4e-41 171.0 218 45.4
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.2e-40 170.6 87 94.3
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.2e-40 170.6 222 45.0
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.7e-40 169.5 87 93.1
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 3.6e-40 169.1 218 48.6
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 1.8e-39 166.8 207 48.3
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 4.4e-38 162.2 208 47.1
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 9.8e-38 161.0 214 45.8
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 8.3e-37 157.9 131 63.4
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 1.1e-36 157.5 204 46.1
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 4.1e-36 155.6 217 44.7
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 7.0e-36 154.8 208 44.7
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 9.1e-36 154.5 87 88.5
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 2.7e-35 152.9 208 42.3
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 3.5e-35 152.5 228 43.9
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 4.5e-35 152.1 212 44.8
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 7.7e-35 151.4 206 45.1
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 3.8e-34 149.1 216 43.5
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 5.0e-34 148.7 209 44.0
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 1.1e-33 147.5 242 40.9
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 2.8e-32 142.9 207 42.5
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 3.6e-32 142.5 212 42.9
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 3.6e-32 142.5 212 42.9
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 8.0e-32 141.4 218 41.3
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 4.0e-31 139.0 223 41.3
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 3.7e-29 132.5 205 41.0
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.1e-28 131.0 87 77.0
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 1.6e-27 127.1 243 37.9
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 1.6e-27 127.1 149 49.7
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 5.9e-27 125.2 166 44.6
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 1.7e-26 123.6 161 43.5
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 1.9e-25 120.2 139 48.2
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 8.6e-18 94.7 129 48.1
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 4.7e-16 89.0 136 42.6
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.1e-15 87.8 207 33.3
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.8e-15 87.0 45 93.3
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.5e-14 81.6 43 90.7
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 3.7e-13 79.3 192 30.2
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 3.2e-12 76.3 154 32.5
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 5.4e-12 75.5 103 34.0
CSS0003823 Camellia sinensis var. sinensis HOM05D024634 ORTHO05D005220 1.6e-11 73.9 43 88.4
CSS0043058 Camellia sinensis var. sinensis HOM05D024634 ORTHO05D005220 6.0e-11 72.0 56 69.6
CSS0002301 Camellia sinensis var. sinensis HOM05D024634 ORTHO05D005220 2.5e-09 66.6 45 77.8
CSS0038998 Camellia sinensis var. sinensis HOM05D024634 ORTHO05D005220 7.3e-09 65.1 45 77.8
CSS0016116 Camellia sinensis var. sinensis HOM05D024634 ORTHO05D005220 3.6e-08 62.8 45 75.6
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 3.6e-08 62.8 209 32.5
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 8.1e-08 61.6 94 35.1
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 5.2e-07 58.9 54 63.0


User provided reference genes

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