Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 1.8e-207 725.7 367 100.0
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 3.6e-160 568.5 375 78.4
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 3.7e-157 558.5 376 77.7
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 4.0e-143 511.9 347 77.5
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 1.2e-142 510.4 381 69.6
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 9.9e-142 507.3 370 70.8
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 6.4e-141 504.6 367 72.8
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 7.1e-140 501.1 370 69.5
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 1.7e-138 496.5 376 68.1
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 3.0e-138 495.7 371 68.5
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 5.1e-138 495.0 370 67.0
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 7.3e-137 491.1 378 67.7
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 9.6e-137 490.7 370 67.8
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 1.4e-135 486.9 370 65.7
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 1.8e-135 486.5 370 67.3
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 4.0e-135 485.3 370 65.4
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 4.0e-135 485.3 372 68.0
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 5.3e-135 485.0 371 67.9
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 6.9e-135 484.6 370 67.0
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 7.6e-134 481.1 370 65.4
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 6.4e-133 478.0 370 64.6
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 1.2e-131 473.8 371 66.3
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 2.1e-131 473.0 370 65.1
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 2.1e-131 473.0 370 65.4
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 2.7e-131 472.6 370 65.1
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 2.7e-131 472.6 372 66.7
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 4.6e-131 471.9 372 65.9
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 1.3e-130 470.3 381 65.4
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 1.3e-130 470.3 370 64.6
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 2.3e-130 469.5 370 65.1
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 6.7e-130 468.0 337 71.5
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 6.7e-130 468.0 371 66.3
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 6.7e-130 468.0 370 64.9
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 8.7e-130 467.6 371 66.0
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 1.5e-129 466.8 373 65.7
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 1.9e-129 466.5 376 64.6
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 7.4e-129 464.5 372 64.5
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 1.3e-128 463.8 370 63.2
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 3.7e-128 462.2 375 63.2
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 1.4e-127 460.3 373 64.1
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 1.4e-127 460.3 368 64.9
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 3.1e-127 459.1 370 64.6
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 2.0e-126 456.4 370 65.4
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 2.6e-126 456.1 372 64.8
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 3.4e-126 455.7 387 62.8
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 7.6e-126 454.5 368 64.1
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 9.9e-126 454.1 372 64.2
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 2.2e-125 453.0 369 62.9
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 4.9e-125 451.8 392 62.2
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 6.4e-125 451.4 366 63.4
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 6.4e-125 451.4 371 65.0
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 8.4e-125 451.1 372 62.9
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 2.4e-124 449.5 370 62.4
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 4.2e-124 448.7 370 64.6
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 7.1e-124 448.0 372 63.7
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 1.2e-123 447.2 370 62.7
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 2.1e-123 446.4 370 61.9
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 4.6e-123 445.3 370 63.2
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 8.7e-122 441.0 372 62.4
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 7.4e-121 438.0 372 62.1
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 1.3e-120 437.2 372 61.8
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 2.1e-120 436.4 372 62.9
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 2.8e-120 436.0 371 62.5
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 2.8e-120 436.0 372 62.6
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 3.7e-120 435.6 377 61.3
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 1.2e-118 430.6 370 61.9
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 4.5e-118 428.7 425 56.5
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 5.8e-118 428.3 370 61.4
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 5.8e-118 428.3 373 60.3
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 1.7e-117 426.8 370 60.5
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 1.4e-116 423.7 388 60.3
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 3.9e-114 415.6 339 64.0
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 3.3e-113 412.5 393 56.5
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 5.3e-111 405.2 382 59.2
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 1.2e-110 404.1 361 61.5
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 5.9e-110 401.7 373 56.8
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 1.0e-109 401.0 375 57.3
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 8.5e-109 397.9 372 58.3
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 1.6e-107 393.7 383 57.2
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 1.0e-106 391.0 337 61.7
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 6.3e-104 381.7 370 52.4
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 1.2e-102 377.5 379 57.0
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 4.5e-102 375.6 369 55.6
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 6.1e-99 365.2 381 49.3
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 1.2e-94 350.9 370 51.1
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 1.7e-93 347.1 375 52.0
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 1.9e-92 343.6 240 75.0
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 4.8e-88 328.9 240 71.7
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 8.2e-88 328.2 240 71.7
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 1.7e-85 320.5 241 70.1
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 2.2e-85 320.1 245 67.3
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 1.5e-84 317.4 374 47.6
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 2.5e-84 316.6 246 67.5
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 4.7e-83 312.4 241 70.1
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 6.1e-83 312.0 240 68.3
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 1.3e-80 304.3 321 54.2
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 1.3e-80 304.3 361 49.3
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 1.6e-78 297.4 371 45.6
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 1.3e-77 294.3 368 48.6
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 1.8e-74 283.9 294 56.1
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 2.2e-72 276.9 232 63.4
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 8.3e-72 275.0 292 50.3
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 1.2e-70 271.2 219 63.9
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 4.6e-54 216.1 311 41.8
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 8.6e-53 211.8 378 38.1
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 3.7e-48 196.4 270 42.6
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 9.5e-44 181.8 127 66.1
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 3.6e-43 179.9 105 83.8
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 4.7e-43 179.5 128 66.4
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 8.9e-42 175.3 141 61.7
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 2.1e-38 164.1 129 61.2
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 1.0e-37 161.8 378 32.5
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 1.2e-35 154.8 103 77.7
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 6.2e-35 152.5 383 31.9
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 3.4e-33 146.7 376 31.4
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 4.1e-31 139.8 118 61.0
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 1.3e-29 134.8 90 75.6
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 1.1e-28 131.7 127 59.8
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 1.1e-26 125.2 110 56.4
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 4.2e-23 113.2 90 62.2
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 1.4e-15 88.2 170 37.6
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 2.3e-13 80.9 49 69.4
SMO196G0213 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 1.2e-09 68.6 103 37.9
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 1.3e-08 65.1 127 33.9
Sc05g0002580 Simmondsia chinensis HOM05D006210 ORTHO05D007510 5.5e-07 59.7 100 38.0
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 9.3e-07 58.9 139 36.7
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 9.3e-07 58.9 55 50.9
Medtr2g078020 Medicago truncatula HOM05D000868 ORTHO05D000711 2.1e-06 57.8 154 32.5
Sabra10G0060200 Salix brachista HOM05D006451 ORTHO05D007680 4.6e-06 56.6 168 33.9
Cpa.g.sc617.3 Carica papaya HOM05D001789 ORTHO05D001755 7.9e-06 55.8 123 35.0
Eucgr.H04321 Eucalyptus grandis HOM05D001789 ORTHO05D001755 7.9e-06 55.8 134 32.1


User provided reference genes

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