Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 1.9e-189 665.6 329 100.0
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 2.8e-156 555.4 309 93.2
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 1.4e-126 456.8 315 73.3
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 3.1e-126 455.7 310 73.5
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 2.6e-125 452.6 307 77.2
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 2.2e-124 449.5 309 74.1
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 6.4e-124 448.0 311 74.3
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 6.4e-124 448.0 310 73.2
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 1.1e-123 447.2 310 71.3
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 2.4e-123 446.0 310 72.9
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 4.1e-123 445.3 309 72.8
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 7.1e-123 444.5 317 72.6
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 1.2e-122 443.7 308 76.6
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.3e-121 440.3 316 70.6
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.7e-121 439.9 294 76.2
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 6.6e-121 438.0 294 75.2
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 3.3e-120 435.6 262 82.4
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.3e-120 435.3 261 82.0
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 5.6e-120 434.9 281 77.2
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 9.5e-120 434.1 267 80.5
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 1.2e-119 433.7 325 67.4
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 1.6e-119 433.3 309 72.2
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 2.1e-119 433.0 278 76.6
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 2.1e-119 433.0 314 70.1
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 1.1e-118 430.6 261 80.8
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 1.4e-118 430.3 261 80.1
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 3.1e-118 429.1 309 70.9
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 3.1e-118 429.1 309 70.9
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 5.2e-118 428.3 260 80.0
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 8.9e-118 427.6 302 72.8
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 1.2e-117 427.2 301 73.1
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.5e-117 426.8 315 69.8
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 2.6e-117 426.0 317 70.0
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 2.6e-117 426.0 312 70.5
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 7.6e-117 424.5 316 68.7
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 9.9e-117 424.1 291 72.5
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 9.9e-117 424.1 309 70.9
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 9.9e-117 424.1 260 78.8
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.3e-116 423.7 309 71.2
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 1.7e-116 423.3 260 77.7
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 1.7e-116 423.3 314 68.5
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.2e-116 422.9 309 70.6
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 2.9e-116 422.5 312 69.2
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 3.8e-116 422.2 261 77.8
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 3.8e-116 422.2 317 68.1
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 6.4e-116 421.4 316 68.4
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 8.4e-116 421.0 304 72.4
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 8.4e-116 421.0 306 70.6
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.9e-115 419.9 273 74.4
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 1.9e-115 419.9 261 77.4
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 1.9e-115 419.9 284 73.6
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 3.2e-115 419.1 254 80.3
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 3.2e-115 419.1 255 79.6
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 5.4e-115 418.3 314 66.6
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 9.2e-115 417.5 304 70.1
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 2.1e-114 416.4 296 71.3
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 2.7e-114 416.0 310 69.4
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 4.6e-114 415.2 310 69.4
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 6.0e-114 414.8 309 67.6
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 6.0e-114 414.8 261 77.8
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 7.8e-114 414.5 309 67.6
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 1.3e-113 413.7 261 77.0
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 2.3e-113 412.9 307 71.7
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 6.6e-113 411.4 309 66.7
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 6.6e-113 411.4 310 68.1
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 6.6e-113 411.4 315 68.6
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 1.1e-112 410.6 261 75.9
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.1e-112 410.6 304 68.4
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 1.9e-112 409.8 243 82.3
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 4.3e-112 408.7 315 67.0
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 5.6e-112 408.3 279 71.7
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 5.6e-112 408.3 318 64.5
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 5.6e-112 408.3 318 64.5
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 1.2e-111 407.1 291 71.1
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 2.1e-111 406.4 290 71.0
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 3.6e-111 405.6 261 75.5
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 3.6e-111 405.6 243 80.7
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 3.6e-111 405.6 243 80.7
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 1.4e-110 403.7 311 65.9
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 2.4e-110 402.9 300 69.0
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 3.1e-110 402.5 276 73.2
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 5.2e-110 401.7 296 69.9
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 6.9e-110 401.4 296 69.9
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 1.2e-109 400.6 261 74.7
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 4.4e-109 398.7 279 69.2
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 2.2e-108 396.4 280 68.9
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 2.9e-108 396.0 289 68.5
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 8.4e-108 394.4 243 79.0
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 1.1e-107 394.0 282 68.1
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 2.4e-107 392.9 291 69.1
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 4.2e-107 392.1 279 67.0
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 7.1e-107 391.3 247 77.3
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 9.3e-107 391.0 278 68.3
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.6e-106 390.2 261 72.4
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 6.6e-105 384.8 312 64.1
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 7.6e-101 371.3 317 61.8
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 8.7e-97 357.8 249 75.9
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 1.7e-92 343.6 269 62.8
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 8.4e-92 341.3 261 64.8
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 1.1e-91 340.9 200 83.0
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 5.1e-89 332.0 259 62.9
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 1.3e-87 327.4 260 61.2
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.6e-87 327.0 343 52.2
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 4.8e-87 325.5 267 65.9
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 1.4e-86 323.9 266 61.3
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 2.4e-86 323.2 254 66.1
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 4.9e-84 315.5 173 85.5
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 1.6e-82 310.5 181 83.4
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 4.3e-80 302.4 192 77.1
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 2.8e-79 299.7 190 77.9
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 1.7e-76 290.4 227 68.7
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 2.9e-76 289.7 190 74.2
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 2.9e-76 289.7 192 73.4
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 1.4e-75 287.3 192 72.9
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 5.1e-73 278.9 263 54.8
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 2.5e-72 276.6 256 56.6
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 9.7e-72 274.6 243 56.0
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 4.5e-69 265.8 206 64.1
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 4.4e-64 249.2 185 68.6
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.2e-61 241.1 310 45.5
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 2.2e-60 236.9 144 76.4
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 1.9e-51 207.2 255 48.2
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 2.0e-37 160.6 136 58.8
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 3.1e-30 136.7 276 35.5
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 1.1e-22 111.7 75 70.7
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 9.2e-22 108.6 65 78.5
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 1.7e-20 104.4 62 74.2
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.1e-17 95.1 274 31.4
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 6.8e-17 92.4 84 63.1
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 1.1e-14 85.1 216 29.2
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 3.3e-11 73.6 104 51.0


User provided reference genes

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