Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 6.0e-39 163.7 82 100.0
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 2.1e-28 128.6 68 95.6
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 3.2e-24 114.8 65 86.2
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 2.1e-23 112.1 65 81.5
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 4.6e-23 110.9 66 78.8
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 6.0e-23 110.5 64 81.2
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.8e-22 109.0 65 80.0
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 1.8e-22 109.0 64 79.7
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.3e-22 108.6 66 80.3
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 2.3e-22 108.6 66 78.8
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 3.0e-22 108.2 66 77.3
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 3.9e-22 107.8 65 81.5
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 3.9e-22 107.8 65 75.4
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 3.9e-22 107.8 65 75.4
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 3.9e-22 107.8 65 78.5
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 5.1e-22 107.5 65 76.9
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 5.1e-22 107.5 64 78.1
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 8.7e-22 106.7 65 78.5
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 8.7e-22 106.7 65 76.9
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 1.1e-21 106.3 65 78.5
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 1.1e-21 106.3 65 78.5
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 1.1e-21 106.3 65 78.5
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.5e-21 105.9 65 76.9
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 2.5e-21 105.1 65 78.5
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.5e-21 105.1 62 79.0
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 3.3e-21 104.8 63 81.0
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.3e-21 104.8 62 79.0
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.3e-21 104.8 62 79.0
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 4.3e-21 104.4 65 78.5
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 5.6e-21 104.0 63 77.8
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 5.6e-21 104.0 65 78.5
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 5.6e-21 104.0 65 78.5
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 5.6e-21 104.0 65 78.5
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 9.6e-21 103.2 65 75.4
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 9.6e-21 103.2 65 76.9
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.3e-20 102.8 65 75.4
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 2.1e-20 102.1 65 70.8
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 2.1e-20 102.1 65 75.4
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.1e-20 102.1 65 75.4
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.1e-20 102.1 65 75.4
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.1e-20 102.1 65 75.4
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 2.8e-20 101.7 64 78.1
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 4.8e-20 100.9 66 69.7
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 6.2e-20 100.5 64 73.4
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 6.2e-20 100.5 65 73.8
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.1e-20 100.1 65 73.8
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.1e-20 100.1 65 73.8
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 8.1e-20 100.1 65 73.8
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 8.1e-20 100.1 65 70.8
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.1e-19 99.8 65 69.2
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 1.1e-19 99.8 65 69.2
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.8e-19 99.0 67 70.1
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.8e-19 99.0 65 72.3
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.8e-19 99.0 65 73.8
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.4e-19 98.6 66 71.2
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 3.1e-19 98.2 65 70.8
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.0e-19 97.8 65 72.3
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 5.3e-19 97.4 66 71.2
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 6.9e-19 97.1 66 69.7
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 9.0e-19 96.7 63 74.6
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 9.0e-19 96.7 67 68.7
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 1.2e-18 96.3 65 72.3
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.5e-18 95.9 63 71.4
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.0e-18 95.5 65 69.2
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.0e-18 95.5 65 69.2
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 2.6e-18 95.1 65 70.8
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.6e-18 95.1 65 70.8
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 2.6e-18 95.1 65 70.8
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 2.6e-18 95.1 67 67.2
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 3.4e-18 94.7 65 70.8
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 5.8e-18 94.0 63 71.4
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 7.6e-18 93.6 66 63.6
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 1.0e-17 93.2 63 73.0
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 1.0e-17 93.2 65 69.2
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.0e-17 93.2 64 70.3
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 1.0e-17 93.2 64 68.8
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.3e-17 92.8 66 65.2
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.7e-17 92.4 66 65.2
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 1.7e-17 92.4 63 73.0
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 2.2e-17 92.0 64 67.2
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 2.2e-17 92.0 64 68.8
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.2e-17 92.0 66 68.2
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.9e-17 91.7 65 67.7
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 2.9e-17 91.7 63 66.7
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 3.8e-17 91.3 66 65.2
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 3.8e-17 91.3 61 72.1
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 4.9e-17 90.9 64 67.2
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 8.4e-17 90.1 61 72.1
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 1.9e-16 89.0 63 68.3
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 2.5e-16 88.6 68 58.8
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 3.2e-16 88.2 61 68.9
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 3.2e-16 88.2 65 66.2
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 4.2e-16 87.8 63 65.1
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 4.2e-16 87.8 64 65.6
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 5.5e-16 87.4 87 55.2
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 5.5e-16 87.4 66 60.6
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 7.1e-16 87.0 66 60.6
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 7.1e-16 87.0 66 59.1
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 7.1e-16 87.0 63 68.3
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 7.1e-16 87.0 64 65.6
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 9.3e-16 86.7 64 67.2
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 1.2e-15 86.3 62 61.3
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 1.6e-15 85.9 51 84.3
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 1.6e-15 85.9 64 59.4
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.6e-15 85.9 62 69.4
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.6e-15 85.9 61 65.6
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 2.1e-15 85.5 62 69.4
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 3.5e-15 84.7 61 65.6
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 4.6e-15 84.3 63 63.5
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 4.6e-15 84.3 68 58.8
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 4.6e-15 84.3 68 58.8
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 4.6e-15 84.3 68 60.3
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 4.6e-15 84.3 68 58.8
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 4.6e-15 84.3 68 60.3
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 4.6e-15 84.3 68 60.3
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 6.0e-15 84.0 69 53.6
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 7.9e-15 83.6 70 57.1
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.0e-14 83.2 65 60.0
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 1.0e-14 83.2 68 58.8
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 1.0e-14 83.2 68 58.8
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.0e-14 83.2 63 65.1
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.3e-14 82.8 63 60.3
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 1.3e-14 82.8 62 64.5
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 1.8e-14 82.4 59 69.5
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 1.8e-14 82.4 100 48.0
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.8e-14 82.4 64 56.2
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 3.0e-14 81.6 70 58.6
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 3.0e-14 81.6 63 60.3
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 3.9e-14 81.3 63 61.9
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 3.9e-14 81.3 63 63.5
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 5.1e-14 80.9 63 57.1
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 6.7e-14 80.5 70 55.7
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 6.7e-14 80.5 70 55.7
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 6.7e-14 80.5 64 56.2
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 6.7e-14 80.5 67 58.2
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 8.7e-14 80.1 63 57.1
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.1e-13 79.7 65 60.0
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.1e-13 79.7 59 66.1
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 1.5e-13 79.3 70 54.3
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.5e-13 78.6 65 60.0
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.5e-13 78.6 65 56.9
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 2.5e-13 78.6 70 55.7
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 5.7e-13 77.4 56 64.3
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.3e-12 76.3 43 88.4
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.3e-12 76.3 43 88.4
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.6e-12 75.9 62 59.7
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.1e-12 75.5 63 63.5
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.1e-12 75.5 66 53.0
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 2.8e-12 75.1 65 56.9
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 3.7e-12 74.7 62 54.8
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 6.2e-12 73.9 63 55.6
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.1e-11 71.6 65 56.9
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 3.1e-11 71.6 65 53.8
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 5.3e-11 70.9 65 55.4
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 6.9e-11 70.5 65 52.3
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.2e-10 69.7 50 62.0
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.2e-10 69.7 55 63.6
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 3.4e-10 68.2 62 53.2
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 3.4e-10 68.2 62 51.6
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 5.8e-10 67.4 64 48.4
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 7.6e-10 67.0 69 44.9
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.0e-09 66.6 62 51.6
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.0e-09 66.6 51 64.7
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 1.3e-09 66.2 65 49.2
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 1.3e-09 66.2 62 51.6
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 2.9e-09 65.1 63 60.3
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.4e-08 62.8 60 46.7
arahy.Tifrunner.gnm1.ann1.P0I4D3 Arachis hypogaea HOM05D003887 ORTHO05D004523 8.7e-06 53.5 36 72.2


User provided reference genes

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