Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 2.8e-77 292.0 158 100.0
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 2.7e-56 222.2 205 66.3
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 5.2e-47 191.4 162 66.7
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 5.7e-46 188.0 162 68.5
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 9.8e-46 187.2 162 65.4
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 2.8e-45 185.7 155 67.1
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 8.3e-45 184.1 162 63.0
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 1.4e-44 183.3 162 65.4
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 1.4e-44 183.3 162 64.8
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 2.4e-44 182.6 160 65.0
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 4.1e-44 181.8 163 63.8
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 4.1e-44 181.8 158 64.6
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 7.0e-44 181.0 168 60.7
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 1.6e-43 179.9 162 62.3
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 2.0e-43 179.5 156 64.1
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 3.5e-43 178.7 162 61.1
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 3.5e-43 178.7 162 63.6
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 4.5e-43 178.3 166 59.6
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 4.5e-43 178.3 166 62.0
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 4.5e-43 178.3 162 61.1
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 5.9e-43 177.9 162 63.0
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 5.9e-43 177.9 162 63.0
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 7.7e-43 177.6 162 63.0
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 7.7e-43 177.6 162 64.8
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 7.7e-43 177.6 162 63.0
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 7.7e-43 177.6 160 61.2
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 1.0e-42 177.2 162 61.1
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 1.0e-42 177.2 162 62.3
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 1.7e-42 176.4 162 60.5
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 1.7e-42 176.4 162 60.5
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 1.7e-42 176.4 162 60.5
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 1.7e-42 176.4 162 61.7
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 2.9e-42 175.6 162 60.5
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 2.9e-42 175.6 162 60.5
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 2.9e-42 175.6 162 62.3
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 3.8e-42 175.3 162 61.1
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 3.8e-42 175.3 160 62.5
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 3.8e-42 175.3 162 63.6
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 5.0e-42 174.9 162 61.1
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 6.5e-42 174.5 162 60.5
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 6.5e-42 174.5 160 61.9
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 6.5e-42 174.5 162 62.3
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 6.5e-42 174.5 162 59.9
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 8.5e-42 174.1 163 60.1
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 8.5e-42 174.1 162 61.1
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 8.5e-42 174.1 162 61.1
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 1.1e-41 173.7 164 61.6
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 1.1e-41 173.7 160 61.9
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 1.1e-41 173.7 162 61.1
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 1.1e-41 173.7 162 59.9
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 1.5e-41 173.3 162 60.5
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 1.5e-41 173.3 162 61.1
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.9e-41 172.9 162 63.0
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 1.9e-41 172.9 162 62.3
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 3.2e-41 172.2 162 61.1
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 4.2e-41 171.8 160 62.5
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 4.2e-41 171.8 162 59.9
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 5.5e-41 171.4 162 61.1
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 5.5e-41 171.4 163 58.9
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 7.2e-41 171.0 162 59.9
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 9.5e-41 170.6 162 58.6
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.2e-40 170.2 162 61.1
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 1.6e-40 169.9 162 59.9
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 2.1e-40 169.5 162 59.9
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 2.1e-40 169.5 162 59.3
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 2.7e-40 169.1 162 59.9
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 3.6e-40 168.7 162 59.3
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 4.7e-40 168.3 162 59.3
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 4.7e-40 168.3 162 59.3
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 4.7e-40 168.3 163 58.3
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 8.0e-40 167.5 162 58.6
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 8.0e-40 167.5 162 59.9
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.0e-39 167.2 165 57.6
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 1.4e-39 166.8 160 59.4
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 1.4e-39 166.8 162 58.0
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 1.8e-39 166.4 162 58.0
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 2.3e-39 166.0 162 58.0
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 4.0e-39 165.2 163 60.7
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 5.2e-39 164.9 162 58.0
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 5.2e-39 164.9 159 59.1
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 5.2e-39 164.9 193 50.3
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 6.8e-39 164.5 160 58.1
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 6.8e-39 164.5 174 55.2
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 1.2e-38 163.7 163 58.3
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 1.5e-38 163.3 159 59.1
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 1.5e-38 163.3 162 59.3
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 1.5e-38 163.3 156 59.0
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 2.0e-38 162.9 159 58.5
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 3.4e-38 162.2 159 58.5
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 3.4e-38 162.2 159 58.5
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 4.4e-38 161.8 162 58.0
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 5.7e-38 161.4 162 58.0
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 1.1e-36 157.1 209 47.8
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 1.1e-36 157.1 209 47.8
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 3.1e-36 155.6 160 57.5
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 5.4e-36 154.8 156 59.6
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 9.2e-36 154.1 162 55.6
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.2e-35 153.7 162 55.6
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 2.7e-35 152.5 176 51.7
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 4.5e-35 151.8 162 54.9
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 5.9e-35 151.4 164 57.9
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 1.7e-34 149.8 150 58.0
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.9e-34 149.1 115 70.4
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 1.5e-33 146.7 114 69.3
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 5.7e-30 134.8 113 64.6
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 9.8e-30 134.0 166 50.6
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 1.1e-28 130.6 121 58.7
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 5.9e-27 124.8 131 55.0
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 7.8e-27 124.4 134 56.0
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 1.1e-25 120.6 115 53.0
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 1.5e-25 120.2 160 45.0
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 8.9e-23 110.9 149 45.0
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 4.9e-21 105.1 134 50.0
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 1.5e-17 93.6 113 46.0
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 1.4e-15 87.0 161 37.9
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 2.3e-15 86.3 45 88.9
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 2.6e-14 82.8 114 41.2
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 6.4e-13 78.2 52 75.0
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 9.2e-12 74.3 149 34.9
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 3.9e-10 68.9 67 56.7
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 7.3e-09 64.7 124 39.5
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 1.8e-07 60.1 105 41.0
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 4.0e-07 58.9 86 41.9
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 5.2e-07 58.5 30 86.7
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 6.8e-07 58.2 31 83.9
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 6.8e-07 58.2 31 83.9


User provided reference genes

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