Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.3e-97 359.8 182 100.0
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 3.0e-67 258.8 183 72.7
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 2.3e-62 242.7 175 70.9
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 2.9e-62 242.3 175 72.0
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 5.0e-62 241.5 176 71.6
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 6.6e-62 241.1 177 67.2
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 8.6e-62 240.7 175 69.7
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 8.6e-62 240.7 172 71.5
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 1.1e-61 240.4 191 68.1
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.9e-61 239.6 176 71.0
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 3.3e-61 238.8 175 69.7
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.6e-61 238.0 180 67.2
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 5.6e-61 238.0 176 71.0
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 1.2e-60 236.9 183 66.7
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 1.2e-60 236.9 182 68.7
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.2e-60 236.9 176 67.6
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 2.1e-60 236.1 176 69.3
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 2.8e-60 235.7 177 65.5
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 3.6e-60 235.3 176 68.8
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.6e-60 235.3 175 69.7
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 6.1e-60 234.6 176 69.9
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.0e-59 233.8 125 95.2
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 3.0e-59 232.3 173 66.5
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 3.0e-59 232.3 176 68.8
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 6.8e-59 231.1 173 68.8
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 2.0e-58 229.6 178 68.5
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 2.0e-58 229.6 161 71.4
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 2.0e-58 229.6 175 69.7
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 2.6e-58 229.2 175 68.6
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 4.4e-58 228.4 175 68.6
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.5e-58 227.6 167 67.7
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 7.5e-58 227.6 173 68.8
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.7e-57 226.5 180 65.6
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.7e-57 226.5 175 67.4
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 2.2e-57 226.1 182 65.9
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 2.2e-57 226.1 178 65.2
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 2.9e-57 225.7 183 62.8
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 2.9e-57 225.7 173 67.1
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 4.9e-57 224.9 174 67.8
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 6.4e-57 224.6 171 68.4
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.1e-56 223.8 169 65.1
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.4e-56 223.4 163 71.2
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 1.4e-56 223.4 172 66.9
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.8e-56 223.0 187 64.2
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 2.4e-56 222.6 173 67.1
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.2e-56 222.2 165 67.9
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 3.2e-56 222.2 172 67.4
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 4.1e-56 221.9 211 59.2
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 4.1e-56 221.9 174 65.5
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 5.4e-56 221.5 171 67.3
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 9.2e-56 220.7 170 67.6
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 2.0e-55 219.5 167 66.5
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 2.7e-55 219.2 175 61.7
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 7.8e-55 217.6 175 62.9
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.0e-54 217.2 178 64.0
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.7e-54 216.5 175 64.6
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 6.6e-54 214.5 169 65.1
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 8.6e-54 214.2 175 64.0
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 8.6e-54 214.2 175 64.0
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 8.6e-54 214.2 174 64.4
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 1.5e-53 213.4 162 69.8
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.5e-53 213.4 175 64.0
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.6e-52 209.9 169 62.7
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.0e-51 207.2 188 59.6
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 1.0e-51 207.2 164 65.2
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.8e-51 206.5 174 63.2
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 2.3e-51 206.1 174 59.2
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 3.1e-51 205.7 177 58.8
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.2e-50 203.8 178 57.9
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 4.4e-50 201.8 183 60.1
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 5.8e-50 201.4 173 57.8
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 2.9e-49 199.1 189 57.1
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 4.9e-49 198.4 246 49.2
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 6.4e-49 198.0 171 62.6
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 2.4e-48 196.1 177 57.6
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 2.0e-47 193.0 168 63.7
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 3.5e-47 192.2 140 74.3
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.7e-46 189.9 179 53.6
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 3.0e-46 189.1 146 67.1
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 3.9e-46 188.7 169 60.9
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 4.3e-45 185.3 179 52.5
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 7.3e-45 184.5 129 72.1
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 7.3e-45 184.5 142 69.7
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.2e-44 183.7 171 53.2
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.1e-43 180.6 124 72.6
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.4e-43 180.3 178 53.4
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 1.4e-43 180.3 171 52.6
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 2.3e-43 179.5 161 59.6
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 4.0e-43 178.7 158 54.4
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 4.0e-43 178.7 178 52.8
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 1.2e-42 177.2 173 53.8
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 2.0e-42 176.4 142 63.4
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 3.4e-42 175.6 179 51.4
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 3.4e-42 175.6 171 52.6
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.3e-41 173.7 113 77.9
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 1.4e-40 170.2 123 69.1
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.9e-40 169.9 174 51.1
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 4.1e-40 168.7 181 49.7
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 1.0e-38 164.1 182 49.5
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.7e-38 163.3 175 49.7
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.3e-38 162.9 200 50.0
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 3.0e-38 162.5 178 49.4
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 3.9e-38 162.2 182 49.5
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 8.6e-38 161.0 139 60.4
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-37 160.6 142 58.5
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 8.1e-36 154.5 179 48.0
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 8.1e-36 154.5 179 48.0
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 1.1e-35 154.1 179 48.0
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 1.4e-35 153.7 119 64.7
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.8e-35 153.3 176 48.9
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 3.1e-35 152.5 171 49.1
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.1e-32 144.1 124 64.5
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 4.1e-32 142.1 141 51.1
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 3.5e-31 139.0 137 56.2
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.3e-30 137.1 118 62.7
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 2.3e-30 136.3 171 43.3
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.0e-30 136.0 183 42.1
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 2.5e-29 132.9 161 50.3
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.3e-29 132.5 174 42.5
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 1.2e-28 130.6 172 43.0
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 4.7e-28 128.6 121 55.4
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.1e-27 127.5 189 41.8
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.4e-27 127.1 174 44.3
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 4.0e-27 125.6 174 44.3
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 4.0e-27 125.6 174 44.3
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 6.9e-27 124.8 117 57.3
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.6e-26 122.9 172 40.1
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 3.4e-26 122.5 168 39.3
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 2.2e-25 119.8 115 57.4
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 4.2e-24 115.5 169 36.7
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 5.4e-24 115.2 145 46.9
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 7.1e-24 114.8 83 72.3
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.6e-23 113.6 57 100.0
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.3e-22 109.8 172 37.2
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 9.0e-19 97.8 57 86.0
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 3.4e-18 95.9 124 45.2
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 1.7e-17 93.6 153 37.3
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 3.8e-17 92.4 63 71.4
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 8.4e-17 91.3 166 36.7
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 1.1e-16 90.9 121 44.6
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.4e-16 89.7 57 80.7
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 2.4e-16 89.7 57 78.9
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 3.2e-16 89.4 57 77.2
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 4.3e-13 79.0 83 50.6
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 4.8e-12 75.5 81 46.9
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 3.1e-11 72.8 41 85.4
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 4.0e-11 72.4 90 43.3
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 6.4e-09 65.1 66 54.5
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 5.1e-06 55.5 60 46.7


User provided reference genes

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