Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033174 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 2.1e-158 562.4 296 100.0
vmacro18391 Vaccinium macrocarpon HOM05D005274 ORTHO05D006485 4.7e-102 375.2 289 71.3
Dinv33272 Davidia involucrata HOM05D005274 ORTHO05D006485 3.2e-98 362.5 240 79.2
SGA_v2.0_scaffold32G13165 Striga asiatica HOM05D005274 ORTHO05D006485 4.4e-92 342.0 285 63.5
TAR624G0372 Trochodendron aralioides HOM05D005274 ORTHO05D006485 7.1e-90 334.7 249 70.7
Oeu020806.2 Olea europaea HOM05D005274 ORTHO05D006485 1.2e-89 334.0 247 70.4
Oeu034171.3 Olea europaea HOM05D005274 ORTHO05D006485 1.2e-89 334.0 238 71.8
Cc00_g24660 Coffea canephora HOM05D005274 ORTHO05D006485 1.0e-88 330.9 243 70.8
Lsat_1_v5_gn_2_86720 Lactuca sativa HOM05D005274 ORTHO05D006485 1.3e-88 330.5 241 71.0
Peaxi162Scf00102g01534 Petunia axillaris HOM05D005274 ORTHO05D006485 1.7e-88 330.1 243 70.0
Lj9A368G50 Lonicera japonica HOM05D005274 ORTHO05D006485 2.3e-88 329.7 232 74.1
TAR381G1230 Trochodendron aralioides HOM05D005274 ORTHO05D006485 2.3e-88 329.7 247 71.7
GSVIVG01032972001 Vitis vinifera HOM05D005274 ORTHO05D006485 3.0e-88 329.3 243 70.0
Rhsim08G0038500 Rhododendron simsii HOM05D005274 ORTHO05D006485 3.3e-87 325.9 232 75.0
PGSC0003DMG400005779 Solanum tuberosum HOM05D005274 ORTHO05D006485 3.3e-87 325.9 268 63.1
Cpa.g.sc70.54 Carica papaya HOM05D005274 ORTHO05D006485 3.6e-86 322.4 241 69.3
MSTRG.20092 Avicennia marina HOM05D005274 ORTHO05D006485 4.8e-86 322.0 240 67.1
CAN.G792.79 Capsicum annuum HOM05D005274 ORTHO05D006485 6.2e-86 321.6 238 69.7
Cc06_g13990 Coffea canephora HOM05D005274 ORTHO05D006485 3.8e-83 312.4 239 69.5
Migut.B00249 Erythranthe guttata HOM05D005274 ORTHO05D006485 3.8e-83 312.4 239 65.7
Atru.chr6.2707 Acer truncatum HOM05D005274 ORTHO05D006485 6.4e-83 311.6 270 60.7
Potri.004G197200 Populus trichocarpa HOM05D005274 ORTHO05D006485 1.1e-82 310.8 268 60.1
Solyc08g008040.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 1.1e-82 310.8 230 68.7
QL02p069234 Quercus lobata HOM05D005274 ORTHO05D006485 1.9e-82 310.1 286 60.8
HanXRQChr07g0200241 Helianthus annuus HOM05D005274 ORTHO05D006485 2.4e-82 309.7 239 66.9
Glyma.14G044800 Glycine max HOM05D005274 ORTHO05D006485 4.2e-82 308.9 258 63.2
Glyma.02G271800 Glycine max HOM05D005274 ORTHO05D006485 6.0e-81 305.1 258 62.4
Sopen08g003920 Solanum pennellii HOM05D005274 ORTHO05D006485 7.9e-81 304.7 228 68.0
Nitab4.5_0004836g0020 Nicotiana tabacum HOM05D005274 ORTHO05D006485 1.8e-80 303.5 231 68.0
CiPaw.04G000800 Carya illinoinensis HOM05D005274 ORTHO05D006485 2.3e-80 303.1 244 63.9
VMungo1309G1271 Vigna mungo HOM05D005274 ORTHO05D006485 2.3e-80 303.1 246 65.9
Nitab4.5_0006090g0030 Nicotiana tabacum HOM05D005274 ORTHO05D006485 6.7e-80 301.6 234 67.9
Hma1.2p1_0474F.1_g160740 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 1.5e-79 300.4 235 70.6
Medtr2g097630 Medicago truncatula HOM05D005274 ORTHO05D006485 5.6e-79 298.5 248 62.9
Sabra04G0133600 Salix brachista HOM05D005274 ORTHO05D006485 5.6e-79 298.5 234 65.0
Ciclev10016162m.g Citrus clementina HOM05D005274 ORTHO05D006485 1.3e-78 297.4 241 63.1
FAN15G2064 Fragaria x ananassa HOM05D005274 ORTHO05D006485 6.2e-78 295.0 273 57.9
SalBow6G5022 Salvia bowleyana HOM05D005274 ORTHO05D006485 8.1e-78 294.7 238 65.1
Lalb_Chr10g0096401 Lupinus albus HOM05D005274 ORTHO05D006485 1.1e-77 294.3 255 61.2
SalBow6G6215 Salvia bowleyana HOM05D005274 ORTHO05D006485 1.8e-77 293.5 238 64.7
ECA238G2078 Erigeron canadensis HOM05D005274 ORTHO05D006485 2.4e-77 293.1 267 58.4
unitig_744.g24245 Utricularia gibba HOM05D005274 ORTHO05D006485 2.4e-77 293.1 239 62.3
PGSC0003DMG400011003 Solanum tuberosum HOM05D005274 ORTHO05D006485 6.9e-77 291.6 238 65.5
DCAR_022112 Daucus carota HOM05D005274 ORTHO05D006485 9.0e-77 291.2 238 63.9
Duzib187G0989 Durio zibethinus HOM05D005274 ORTHO05D006485 9.0e-77 291.2 268 59.7
Medtr5g071380 Medicago truncatula HOM05D005274 ORTHO05D006485 9.0e-77 291.2 248 61.3
arahy.Tifrunner.gnm1.ann1.5GP605 Arachis hypogaea HOM05D005274 ORTHO05D006485 1.5e-76 290.4 265 56.6
arahy.Tifrunner.gnm1.ann1.T7P6Q4 Arachis hypogaea HOM05D005274 ORTHO05D006485 2.6e-76 289.7 265 56.2
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 7.6e-76 288.1 248 60.1
Eucgr.I01592 Eucalyptus grandis HOM05D005274 ORTHO05D006485 1.3e-75 287.3 244 61.9
FvH4_2g10500 Fragaria vesca HOM05D005274 ORTHO05D006485 1.3e-75 287.3 269 58.0
RcHm_v2.0_Chr6g0267991 Rosa chinensis HOM05D005274 ORTHO05D006485 1.7e-75 287.0 244 61.9
Cfa007146 Carpinus fangiana HOM05D005274 ORTHO05D006485 2.2e-75 286.6 235 64.7
FAN27G1266 Fragaria x ananassa HOM05D005274 ORTHO05D006485 2.9e-75 286.2 269 58.0
LjContig00564g0024425 Lotus japonicus HOM05D005274 ORTHO05D006485 2.9e-75 286.2 271 56.8
Ca_26258_v3 Cicer arietinum L. HOM05D005274 ORTHO05D006485 3.8e-75 285.8 248 58.5
FAN24G2993 Fragaria x ananassa HOM05D005274 ORTHO05D006485 3.8e-75 285.8 269 57.6
Nn8g40353 Nelumbo nucifera HOM05D005274 ORTHO05D006485 3.8e-75 285.8 229 63.8
Sed0000255 Sechium edule HOM05D005274 ORTHO05D006485 2.4e-74 283.1 244 58.2
Gohir.D11G068400 Gossypium hirsutum HOM05D005274 ORTHO05D006485 3.2e-74 282.7 264 60.2
Gorai.007G073200 Gossypium raimondii HOM05D005274 ORTHO05D006485 1.6e-73 280.4 264 59.8
Psat2g056880 Pisum sativum HOM05D005274 ORTHO05D006485 2.1e-73 280.0 243 59.3
Prupe.5G024800 Prunus persica HOM05D005274 ORTHO05D006485 6.0e-73 278.5 273 54.9
MD09G1264600 Malus domestica HOM05D005274 ORTHO05D006485 3.0e-72 276.2 244 59.0
Manes.11G112500 Manihot esculenta HOM05D005274 ORTHO05D006485 5.1e-72 275.4 232 63.8
CsaV3_5G024970 Cucumis sativus L. HOM05D005274 ORTHO05D006485 6.7e-72 275.0 239 58.6
THA.LOC104802536 Tarenaya hassleriana HOM05D005274 ORTHO05D006485 2.5e-71 273.1 244 59.4
MELO3C005096.2 Cucumis melo HOM05D005274 ORTHO05D006485 1.6e-70 270.4 241 59.8
AUR62017870 Chenopodium quinoa HOM05D005274 ORTHO05D006485 4.8e-70 268.9 245 57.6
Thecc.04G049000 Theobroma cacao HOM05D005274 ORTHO05D006485 1.4e-69 267.3 231 62.3
EL10Ac6g13414 Beta vulgaris HOM05D005274 ORTHO05D006485 3.1e-69 266.2 250 56.4
PGR142G3427 Punica granatum HOM05D005274 ORTHO05D006485 3.1e-69 266.2 258 57.0
AUR62009346 Chenopodium quinoa HOM05D005274 ORTHO05D006485 5.3e-69 265.4 244 57.8
Sc14g0002660 Simmondsia chinensis HOM05D005274 ORTHO05D006485 1.4e-66 257.3 231 60.2
Phvul.005G158400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 7.1e-66 255.0 251 55.8
Gohir.A11G064100 Gossypium hirsutum HOM05D005274 ORTHO05D006485 1.2e-65 254.2 228 60.5
PSO063G1622 Papaver somniferum HOM05D005274 ORTHO05D006485 2.1e-65 253.4 239 56.1
ATR1136G175 Amborella trichopoda HOM05D005274 ORTHO05D006485 2.7e-65 253.1 240 55.4
ClCG01G008500 Citrullus lanatus HOM05D005274 ORTHO05D006485 7.9e-65 251.5 240 55.0
PSO017G0788 Papaver somniferum HOM05D005274 ORTHO05D006485 1.3e-64 250.8 239 55.6
Aqoxy5G02491 Aquilegia oxysepala HOM05D005274 ORTHO05D006485 3.0e-64 249.6 269 51.3
Carub.0004s1624 Capsella rubella HOM05D005274 ORTHO05D006485 1.5e-63 247.3 241 53.9
BcaB01g06368 Brassica carinata HOM05D005274 ORTHO05D006485 1.9e-63 246.9 291 47.1
CARHR128660 Cardamine hirsuta HOM05D005274 ORTHO05D006485 1.9e-63 246.9 262 50.8
AT2G34570 Arabidopsis thaliana HOM05D005274 ORTHO05D006485 9.6e-63 244.6 240 53.3
AL4G30540 Arabidopsis lyrata HOM05D005274 ORTHO05D006485 1.3e-62 244.2 254 51.6
C03p22390 Brassica napus HOM05D005274 ORTHO05D006485 2.1e-62 243.4 279 46.6
Sp4g16830 Schrenkiella parvula HOM05D005274 ORTHO05D006485 2.8e-62 243.0 246 52.8
Thhalv10017887m.g Eutrema salsugineum HOM05D005274 ORTHO05D006485 3.7e-62 242.7 244 52.5
A03p19190 Brassica napus HOM05D005274 ORTHO05D006485 6.3e-62 241.9 287 46.3
BraA03t11174Z Brassica rapa HOM05D005274 ORTHO05D006485 6.3e-62 241.9 287 46.3
CANSAT54G1155 Cannabis sativa HOM05D005274 ORTHO05D006485 8.2e-62 241.5 244 53.3
BcaC01g05789 Brassica carinata HOM05D005274 ORTHO05D006485 1.8e-61 240.4 259 49.4
BolC3t14622H Brassica oleracea HOM05D005274 ORTHO05D006485 1.8e-61 240.4 259 49.4
MD08G1181300 Malus domestica HOM05D005274 ORTHO05D006485 1.5e-60 237.3 237 54.0
Aa31LG10G6820 Aethionema arabicum HOM05D005274 ORTHO05D006485 1.3e-59 234.2 297 43.4
Potri.009G159400 Populus trichocarpa HOM05D005274 ORTHO05D006485 2.9e-59 233.0 170 67.6
Sopen10g034190 Solanum pennellii HOM05D005274 ORTHO05D006485 3.8e-59 232.6 218 60.1
SHI33526 Sapria himalayana HOM05D005274 ORTHO05D006485 6.5e-59 231.9 233 54.9
TWI32G1102 Tripterygium wilfordii HOM05D005274 ORTHO05D006485 6.5e-59 231.9 282 47.9
SHI31386 Sapria himalayana HOM05D005274 ORTHO05D006485 3.2e-58 229.6 235 53.2
Hund29750 Selenicereus undatus HOM05D005274 ORTHO05D006485 5.5e-58 228.8 194 60.8
Hund29752 Selenicereus undatus HOM05D005274 ORTHO05D006485 5.5e-58 228.8 194 60.8
Ah.10g032810 Amaranthus hybridus HOM05D005274 ORTHO05D006485 3.0e-56 223.0 246 51.6
MD16G1246600 Malus domestica HOM05D005274 ORTHO05D006485 4.3e-55 219.2 188 59.0
Os02g0468200 Oryza sativa ssp. japonica HOM05D005274 ORTHO05D006485 2.4e-53 213.4 230 50.4
Zm00001eb319780 Zea mays HOM05D005274 ORTHO05D006485 1.2e-52 211.1 232 50.0
AUR62037816 Chenopodium quinoa HOM05D005274 ORTHO05D006485 1.3e-51 207.6 232 48.7
AagrBONN_evm.TU.Sc2ySwM_228.2974 Anthoceros agrestis HOM05D005274 ORTHO05D006485 3.6e-49 199.5 238 44.1
BolC4t23029H Brassica oleracea HOM05D005274 ORTHO05D006485 1.4e-48 197.6 287 42.2
Pp3c2_27880 Physcomitrium patens HOM05D005274 ORTHO05D006485 1.8e-48 197.2 271 42.8
Cc00_g27920 Coffea canephora HOM05D005274 ORTHO05D006485 5.1e-48 195.7 159 63.5
COL.COLO4_13388 Corchorus olitorius HOM05D005274 ORTHO05D006485 9.7e-47 191.4 231 48.5
Mapoly0006s0036 Marchantia polymorpha HOM05D005274 ORTHO05D006485 1.3e-46 191.0 243 45.3
SMO347G0017 Selaginella moellendorffii HOM05D005274 ORTHO05D006485 4.8e-46 189.1 242 45.9
HPP92_002470 Vanilla planifolia HOM05D005274 ORTHO05D006485 1.1e-45 188.0 133 65.4
Actinidia19548 Actinidia chinensis HOM05D005274 ORTHO05D006485 1.7e-43 180.6 108 85.2
Solyc10g084740.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 1.9e-42 177.2 278 42.8
Nitab4.5_0000568g0280 Nicotiana tabacum HOM05D005274 ORTHO05D006485 1.2e-41 174.5 255 45.5
BcaC02g11519 Brassica carinata HOM05D005274 ORTHO05D006485 1.0e-40 171.4 133 60.9
CSS0005176 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 6.7e-40 168.7 107 86.0
C04p14460 Brassica napus HOM05D005274 ORTHO05D006485 4.1e-37 159.5 287 37.6
SEGI_17090 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 5.3e-37 159.1 132 56.1
CBR_g8346 Chara braunii HOM05D005274 ORTHO05D006485 3.5e-36 156.4 200 45.0
Cc00_g29040 Coffea canephora HOM05D005274 ORTHO05D006485 4.1e-29 132.9 84 77.4
Phvul.005G025400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 5.3e-29 132.5 226 39.8
Nn8g41301 Nelumbo nucifera HOM05D005274 ORTHO05D006485 1.8e-24 117.5 113 60.2
MCO15G315 Micromonas commoda HOM05D005274 ORTHO05D006485 1.2e-23 114.8 239 33.9
Cre11.g480800 Chlamydomonas reinhardtii HOM05D005274 ORTHO05D006485 6.3e-22 109.0 300 29.0
Sabra10G0082800 Salix brachista HOM05D005274 ORTHO05D006485 8.6e-19 98.6 107 45.8
Sabra02G0148900 Salix brachista HOM05D005274 ORTHO05D006485 5.5e-18 95.9 107 44.9
CDE04G1865 Ceratophyllum demersum HOM05D000386 ORTHO05D000406 3.6e-17 93.2 65 66.2
PGR142G3154 Punica granatum HOM05D005274 ORTHO05D006485 6.8e-16 89.0 133 40.6
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 9.8e-15 85.1 161 35.4
Hma1.2p1_0474F.1_g160730 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 4.1e-13 79.7 100 57.0
PRCOL_00002591 Prasinoderma coloniale HOM05D005274 ORTHO05D006485 1.9e-10 70.9 240 28.3
SEGI_09940 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 7.3e-10 68.9 102 46.1
CSS0001269 Camellia sinensis var. sinensis HOM05D056337 ORTHO05D109748 9.5e-10 68.6 51 86.3
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 6.1e-09 65.9 42 66.7
Sabra07G0113400 Salix brachista HOM05D005274 ORTHO05D006485 3.0e-08 63.5 42 64.3
Sabra16G0093500 Salix brachista HOM05D005274 ORTHO05D007424 1.2e-07 61.6 82 42.7
Sabra16G0085100 Salix brachista HOM05D005274 ORTHO05D007424 1.5e-07 61.2 45 60.0
Rhsim09G0096800 Rhododendron simsii HOM05D005274 ORTHO05D006485 2.0e-07 60.8 165 37.6
CSS0007837 Camellia sinensis var. sinensis HOM05D056337 ORTHO05D112645 9.8e-07 58.5 65 55.4
Cre16.g679450 Chlamydomonas reinhardtii HOM05D004276 ORTHO05D005126 9.8e-07 58.5 144 34.7
Cfa022755 Carpinus fangiana HOM05D005274 ORTHO05D006485 1.3e-06 58.2 199 27.6
Ciclev10022345m.g Citrus clementina HOM05D004276 ORTHO05D005126 1.7e-06 57.8 153 30.7
Pp3c11_12810 Physcomitrium patens HOM05D004276 ORTHO05D005126 2.2e-06 57.4 117 33.3
Duzib133G1515 Durio zibethinus HOM05D004276 ORTHO05D005126 2.9e-06 57.0 144 31.9
QL04p058903 Quercus lobata HOM05D004276 ORTHO05D005126 2.9e-06 57.0 126 31.7
Thecc.01G349900 Theobroma cacao HOM05D004276 ORTHO05D005126 3.7e-06 56.6 144 31.9
TAR375G0154 Trochodendron aralioides HOM05D004276 ORTHO05D005126 3.7e-06 56.6 144 31.2
arahy.Tifrunner.gnm1.ann1.4FI6MM Arachis hypogaea HOM05D004276 ORTHO05D005126 4.9e-06 56.2 142 29.6
arahy.Tifrunner.gnm1.ann1.K2BJ17 Arachis hypogaea HOM05D004276 ORTHO05D005126 4.9e-06 56.2 142 29.6
Haze_27571 Corylus avellana HOM05D004276 ORTHO05D005126 4.9e-06 56.2 115 27.0
Lj9C594T5 Lonicera japonica HOM05D004276 ORTHO05D005126 4.9e-06 56.2 153 29.4
PSO135G0697 Papaver somniferum HOM05D004276 ORTHO05D005126 4.9e-06 56.2 144 31.2
Pp3c7_15560 Physcomitrium patens HOM05D004276 ORTHO05D005126 4.9e-06 56.2 117 32.5
arahy.Tifrunner.gnm1.ann1.BP50A3 Arachis hypogaea HOM05D004276 ORTHO05D005126 6.4e-06 55.8 142 29.6
arahy.Tifrunner.gnm1.ann1.X3APAR Arachis hypogaea HOM05D004276 ORTHO05D005126 6.4e-06 55.8 142 29.6
Duzib138G1911 Durio zibethinus HOM05D004276 ORTHO05D005126 6.4e-06 55.8 127 32.3
Eucgr.E00082 Eucalyptus grandis HOM05D004276 ORTHO05D005126 6.4e-06 55.8 144 30.6
Os06g0158600 Oryza sativa ssp. japonica HOM05D004276 ORTHO05D005126 6.4e-06 55.8 152 29.6
PSO210G0614 Papaver somniferum HOM05D004276 ORTHO05D005126 6.4e-06 55.8 144 30.6
PSO302G0143 Papaver somniferum HOM05D004276 ORTHO05D005126 6.4e-06 55.8 144 30.6
PSO384G3706 Papaver somniferum HOM05D004276 ORTHO05D005126 6.4e-06 55.8 144 30.6
Sp4g28280 Schrenkiella parvula HOM05D004276 ORTHO05D005126 6.4e-06 55.8 127 31.5
TAR374G1118 Trochodendron aralioides HOM05D004276 ORTHO05D005126 6.4e-06 55.8 144 30.6
Prupe.2G181300 Prunus persica HOM05D004276 ORTHO05D005126 8.3e-06 55.5 144 30.6
Zm00001eb376300 Zea mays HOM05D004276 ORTHO05D005126 8.3e-06 55.5 151 29.8
Zm00001eb376330 Zea mays HOM05D004276 ORTHO05D005126 8.3e-06 55.5 151 29.8


User provided reference genes

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