Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033156 Camellia sinensis var. sinensis HOM05D005948 ORTHO05D007689 3.9e-63 244.6 119 100.0
vmacro06779 Vaccinium macrocarpon HOM05D005948 ORTHO05D007689 6.0e-56 220.7 119 89.9
Rhsim03G0169500 Rhododendron simsii HOM05D005948 ORTHO05D007689 4.8e-53 211.1 119 87.4
Dinv22965 Davidia involucrata HOM05D005948 ORTHO05D007689 9.9e-51 203.4 119 84.9
GSVIVG01018572001 Vitis vinifera HOM05D005948 ORTHO05D007689 2.7e-48 195.3 119 80.7
TAR375G0868 Trochodendron aralioides HOM05D005948 ORTHO05D007689 3.9e-47 191.4 119 78.2
Prupe.2G280500 Prunus persica HOM05D005948 ORTHO05D007689 8.7e-47 190.3 119 79.0
Lj8C39T8 Lonicera japonica HOM05D005948 ORTHO05D007689 1.9e-46 189.1 119 74.8
Cc02_g04060 Coffea canephora HOM05D005948 ORTHO05D007689 2.5e-46 188.7 119 72.3
CiPaw.04G061500 Carya illinoinensis HOM05D005948 ORTHO05D007689 1.1e-44 183.3 119 77.3
QL09p019069 Quercus lobata HOM05D005948 ORTHO05D007689 1.1e-44 183.3 119 73.9
Cfa008218 Carpinus fangiana HOM05D005948 ORTHO05D007689 1.4e-44 183.0 119 76.5
Atru.chr1.666 Acer truncatum HOM05D005948 ORTHO05D007689 2.4e-44 182.2 119 73.9
Atru.chr1.671 Acer truncatum HOM05D005948 ORTHO05D007689 2.4e-44 182.2 119 73.9
Solyc03g083580.3 Solanum lycopersicum HOM05D005948 ORTHO05D007689 2.4e-44 182.2 119 73.9
Actinidia25023 Actinidia chinensis HOM05D005948 ORTHO05D007689 4.0e-44 181.4 106 80.2
MD07G1256400 Malus domestica HOM05D005948 ORTHO05D007689 4.0e-44 181.4 119 75.6
Manes.14G034200 Manihot esculenta HOM05D005948 ORTHO05D007689 5.3e-44 181.0 119 73.1
Haze_13840 Corylus avellana HOM05D005948 ORTHO05D007689 6.9e-44 180.6 119 74.8
Sopen03g023390 Solanum pennellii HOM05D005948 ORTHO05D007689 9.0e-44 180.3 119 73.1
Eucgr.K00152 Eucalyptus grandis HOM05D005948 ORTHO05D007689 1.5e-43 179.5 119 73.9
PSO063G6398 Papaver somniferum HOM05D005948 ORTHO05D007689 1.5e-43 179.5 119 69.7
Nn4g26350 Nelumbo nucifera HOM05D005948 ORTHO05D007689 2.6e-43 178.7 119 73.9
RcHm_v2.0_Chr1g0374891 Rosa chinensis HOM05D005948 ORTHO05D007689 5.8e-43 177.6 119 71.4
Hund11806 Selenicereus undatus HOM05D005948 ORTHO05D007689 7.6e-43 177.2 119 70.6
MBI04_g35669_MAGBIO Magnolia biondii HOM05D005948 ORTHO05D007689 1.3e-42 176.4 119 72.3
Sc19g0001930 Simmondsia chinensis HOM05D005948 ORTHO05D007689 2.2e-42 175.6 119 71.4
EL10Ac3g05815 Beta vulgaris HOM05D005948 ORTHO05D007689 2.9e-42 175.3 119 68.9
Ciclev10004402m.g Citrus clementina HOM05D005948 ORTHO05D007689 2.9e-42 175.3 119 71.4
FAN10G0255 Fragaria x ananassa HOM05D005948 ORTHO05D007689 2.9e-42 175.3 119 70.6
Cpa.g.sc3.294 Carica papaya HOM05D005948 ORTHO05D007689 3.8e-42 174.9 119 71.4
FAN06G0529 Fragaria x ananassa HOM05D005948 ORTHO05D007689 8.4e-42 173.7 119 70.6
FAN06G2156 Fragaria x ananassa HOM05D005948 ORTHO05D007689 8.4e-42 173.7 119 70.6
FvH4_7g27930 Fragaria vesca HOM05D005948 ORTHO05D007689 1.4e-41 172.9 119 70.6
Potri.015G129300 Populus trichocarpa HOM05D005948 ORTHO05D007689 1.4e-41 172.9 119 71.4
CAN.G152.16 Capsicum annuum HOM05D005948 ORTHO05D007689 5.4e-41 171.0 119 68.1
Aqoxy5G03938 Aquilegia oxysepala HOM05D005948 ORTHO05D007689 7.1e-41 170.6 119 68.1
Nitab4.5_0001548g0060 Nicotiana tabacum HOM05D005948 ORTHO05D007689 3.5e-40 168.3 108 73.1
Duzib205G0588 Durio zibethinus HOM05D005948 ORTHO05D007689 6.0e-40 167.5 119 70.6
FAN03G1032 Fragaria x ananassa HOM05D005948 ORTHO05D007689 7.9e-40 167.2 119 67.2
TWI23G0886 Tripterygium wilfordii HOM05D005948 ORTHO05D007689 7.9e-40 167.2 119 68.1
THA.LOC104811515 Tarenaya hassleriana HOM05D005948 ORTHO05D007689 1.0e-39 166.8 119 66.4
Nitab4.5_0000072g0570 Nicotiana tabacum HOM05D005948 ORTHO05D007689 1.3e-39 166.4 108 72.2
PGR142G1204 Punica granatum HOM05D005948 ORTHO05D007689 1.3e-39 166.4 119 70.6
SalBow4G1780 Salvia bowleyana HOM05D005948 ORTHO05D007689 1.3e-39 166.4 119 69.7
Sed0017785 Sechium edule HOM05D005948 ORTHO05D007689 1.8e-39 166.0 119 65.5
Gohir.A11G007600 Gossypium hirsutum HOM05D005948 ORTHO05D007689 2.3e-39 165.6 119 69.7
Oeu021716.2 Olea europaea HOM05D005948 ORTHO05D007689 3.0e-39 165.2 119 67.2
Aa31LG3G7950 Aethionema arabicum HOM05D005948 ORTHO05D007689 3.9e-39 164.9 119 65.5
BcaB01g04169 Brassica carinata HOM05D005948 ORTHO05D007689 3.9e-39 164.9 119 66.4
AUR62016181 Chenopodium quinoa HOM05D005948 ORTHO05D007689 6.7e-39 164.1 119 63.9
AUR62035100 Chenopodium quinoa HOM05D005948 ORTHO05D007689 6.7e-39 164.1 119 63.9
Thhalv10012823m.g Eutrema salsugineum HOM05D005948 ORTHO05D007689 6.7e-39 164.1 119 65.5
AL8G25840 Arabidopsis lyrata HOM05D005948 ORTHO05D007689 8.7e-39 163.7 119 65.5
Migut.F00455 Erythranthe guttata HOM05D005948 ORTHO05D007689 8.7e-39 163.7 119 68.9
Gohir.D11G010266 Gossypium hirsutum HOM05D005948 ORTHO05D007689 1.5e-38 162.9 119 68.1
Gorai.007G008100 Gossypium raimondii HOM05D005948 ORTHO05D007689 1.5e-38 162.9 119 68.1
BcaC01g06127 Brassica carinata HOM05D005948 ORTHO05D007689 2.5e-38 162.2 119 64.7
A03p16120 Brassica napus HOM05D005948 ORTHO05D007689 2.5e-38 162.2 119 64.7
C03p18990 Brassica napus HOM05D005948 ORTHO05D007689 2.5e-38 162.2 119 64.7
BolC3t14288H Brassica oleracea HOM05D005948 ORTHO05D007689 2.5e-38 162.2 119 64.7
BraA03t10903Z Brassica rapa HOM05D005948 ORTHO05D007689 2.5e-38 162.2 119 64.7
CsaV3_3G016260 Cucumis sativus L. HOM05D005948 ORTHO05D007689 4.3e-38 161.4 119 65.5
Ca_14119_v3 Cicer arietinum L. HOM05D005948 ORTHO05D007689 5.6e-38 161.0 119 68.9
Lsat_1_v5_gn_8_9260 Lactuca sativa HOM05D005948 ORTHO05D007689 5.6e-38 161.0 119 66.4
MELO3C006824.2 Cucumis melo HOM05D005948 ORTHO05D007689 7.4e-38 160.6 119 64.7
DCAR_018091 Daucus carota HOM05D005948 ORTHO05D007689 9.6e-38 160.2 108 71.3
AT5G51540 Arabidopsis thaliana HOM05D005948 ORTHO05D007689 1.6e-37 159.5 119 63.9
CARHR264310 Cardamine hirsuta HOM05D005948 ORTHO05D007689 1.6e-37 159.5 119 62.2
Sp6g13730 Schrenkiella parvula HOM05D005948 ORTHO05D007689 1.6e-37 159.5 119 63.0
Thecc.03G158700 Theobroma cacao HOM05D005948 ORTHO05D007689 8.1e-37 157.1 119 66.4
Carub.0008s1157 Capsella rubella HOM05D005948 ORTHO05D007689 1.1e-36 156.8 119 63.9
Lalb_Chr18g0048781 Lupinus albus HOM05D005948 ORTHO05D007689 2.4e-36 155.6 119 66.4
SGA_v2.0_scaffold543G52820 Striga asiatica HOM05D005948 ORTHO05D007689 2.4e-36 155.6 124 63.7
Medtr3g009160 Medicago truncatula HOM05D005948 ORTHO05D007689 4.0e-36 154.8 119 66.4
TPR.G27559 Trifolium pratense HOM05D005948 ORTHO05D007689 4.0e-36 154.8 119 66.4
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 5.3e-36 154.5 119 64.7
Phvul.005G006700 Phaseolus vulgaris HOM05D005948 ORTHO05D007689 6.9e-36 154.1 119 65.5
Psat5g230800 Pisum sativum HOM05D005948 ORTHO05D007689 9.0e-36 153.7 119 64.7
VMungo1080G0003 Vigna mungo HOM05D005948 ORTHO05D007689 9.0e-36 153.7 119 64.7
ClCG05G007440 Citrullus lanatus HOM05D005948 ORTHO05D007689 4.5e-35 151.4 119 63.0
ECA233G5295 Erigeron canadensis HOM05D005948 ORTHO05D007689 5.8e-35 151.0 119 63.9
Glyma.04G117400 Glycine max HOM05D005948 ORTHO05D007689 1.7e-34 149.4 119 63.9
Os06g0686500 Oryza sativa ssp. japonica HOM05D005948 ORTHO05D007689 1.7e-34 149.4 119 59.7
Zm00001eb225650 Zea mays HOM05D005948 ORTHO05D007689 3.8e-34 148.3 119 58.0
arahy.Tifrunner.gnm1.ann1.1LKT55 Arachis hypogaea HOM05D005948 ORTHO05D007689 1.1e-33 146.7 119 60.5
arahy.Tifrunner.gnm1.ann1.UP65TY Arachis hypogaea HOM05D005948 ORTHO05D007689 1.1e-33 146.7 119 60.5
HPP92_003266 Vanilla planifolia HOM05D005948 ORTHO05D007689 1.4e-33 146.4 119 58.0
HanXRQChr08g0223861 Helianthus annuus HOM05D005948 ORTHO05D007689 1.9e-33 146.0 119 61.3
ATR0115G032 Amborella trichopoda HOM05D005948 ORTHO05D007689 2.7e-32 142.1 119 58.8
SalBow4G3350 Salvia bowleyana HOM05D005948 ORTHO05D007689 7.9e-32 140.6 119 63.0
AagrBONN_evm.TU.Sc2ySwM_228.3357 Anthoceros agrestis HOM05D005948 ORTHO05D007689 2.4e-28 129.0 119 47.1
COL.COLO4_14151 Corchorus olitorius HOM05D005948 ORTHO05D007689 1.3e-26 123.2 76 73.7
Mapoly0001s0567 Marchantia polymorpha HOM05D005948 ORTHO05D007689 3.8e-26 121.7 119 44.5
Pp3c16_10250 Physcomitrium patens HOM05D005948 ORTHO05D007689 6.5e-26 120.9 120 46.7
SEGI_10637 Sequoiadendron giganteum HOM05D005948 ORTHO05D007689 1.2e-24 116.7 94 54.3
SMO172G0186 Selaginella moellendorffii HOM05D005948 ORTHO05D007689 2.1e-24 115.9 119 47.1
CBR_g38873 Chara braunii HOM05D005948 ORTHO05D000353 3.7e-21 105.1 119 40.3
PGSC0003DMG401023000 Solanum tuberosum HOM05D005948 ORTHO05D007689 2.6e-19 99.0 68 72.1
Lj3g0024543 Lotus japonicus HOM05D005948 ORTHO05D007689 4.5e-19 98.2 119 43.7
Glyma.02G058100 Glycine max HOM05D005948 ORTHO05D007689 5.9e-19 97.8 83 61.4
Ah.07g208040 Amaranthus hybridus HOM05D005948 ORTHO05D007689 7.2e-17 90.9 52 76.9
CDE02G2841 Ceratophyllum demersum HOM05D005948 ORTHO05D007689 6.7e-15 84.3 66 60.6
unitig_46.g18766 Utricularia gibba HOM05D005948 ORTHO05D007689 5.3e-12 74.7 65 55.4
Cfa024759 Carpinus fangiana HOM05D001304 ORTHO05D007800 3.3e-06 55.5 135 26.7


User provided reference genes

Program Settings