Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033123 Camellia sinensis var. sinensis HOM05D001780 ORTHO05D005322 1.5e-35 152.1 68 100.0
Rhsim04G0222400 Rhododendron simsii HOM05D001780 ORTHO05D005322 8.3e-10 66.6 26 100.0
GSVIVG01017762001 Vitis vinifera HOM05D001780 ORTHO05D005322 3.1e-09 64.7 26 96.2
Lj6A676G61 Lonicera japonica HOM05D001780 ORTHO05D005322 5.4e-09 63.9 25 100.0
Aa31sc180G20 Aethionema arabicum HOM05D001780 ORTHO05D005322 7.0e-09 63.5 26 96.2
AL8G22430 Arabidopsis lyrata HOM05D001780 ORTHO05D005322 7.0e-09 63.5 26 96.2
COL.COLO4_34741 Corchorus olitorius HOM05D001780 ORTHO05D005322 7.0e-09 63.5 26 92.3
C07p39660 Brassica napus HOM05D001780 ORTHO05D005322 9.1e-09 63.2 26 92.3
BolC7t44489H Brassica oleracea HOM05D001780 ORTHO05D005322 9.1e-09 63.2 26 92.3
BraA06t26775Z Brassica rapa HOM05D001780 ORTHO05D005322 9.1e-09 63.2 26 92.3
vmacro08155 Vaccinium macrocarpon HOM05D001780 ORTHO05D005322 9.1e-09 63.2 26 92.3
arahy.Tifrunner.gnm1.ann1.A68CME Arachis hypogaea HOM05D001780 ORTHO05D005322 1.6e-08 62.4 25 96.0
Cc03_g01890 Coffea canephora HOM05D001780 ORTHO05D005322 1.0e-07 59.7 26 88.5
Atru.chr4.2840 Acer truncatum HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
Aqoxy2G02980_Aqoxy2G02981 Aquilegia oxysepala HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
Cpa.g.sc16.173 Carica papaya HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
Cfa015386 Carpinus fangiana HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
CDE01G0296 Ceratophyllum demersum HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
CDE12G0042 Ceratophyllum demersum HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
Haze_01199 Corylus avellana HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
DCAR_002465 Daucus carota HOM05D001780 ORTHO05D005322 1.3e-07 59.3 25 92.0
Eucgr.H03916 Eucalyptus grandis HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
FvH4_4g18060 Fragaria vesca HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
FAN12G1911 Fragaria x ananassa HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
FAN12G3693 Fragaria x ananassa HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
MD13G1168400 Malus domestica HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
MD16G1168800 Malus domestica HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
Nn3g18527 Nelumbo nucifera HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
Prupe.1G136500 Prunus persica HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
PGR004G0386 Punica granatum HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
RcHm_v2.0_Chr4g0422271 Rosa chinensis HOM05D001780 ORTHO05D005322 1.3e-07 59.3 23 100.0
EL10Ac9g22594 Beta vulgaris HOM05D001780 ORTHO05D005322 1.7e-07 58.9 23 95.7
A02p37850 Brassica napus HOM05D001780 ORTHO05D005322 2.3e-07 58.5 24 95.8
BraA02t08767Z Brassica rapa HOM05D001780 ORTHO05D005322 2.3e-07 58.5 24 95.8
Potri.010G014500 Populus trichocarpa HOM05D001780 ORTHO05D005322 2.3e-07 58.5 23 95.7
QL06p008943 Quercus lobata HOM05D001780 ORTHO05D005322 2.3e-07 58.5 24 95.8
SalBow2G1454 Salvia bowleyana HOM05D001780 ORTHO05D005322 2.3e-07 58.5 26 84.6
Ah.01g003180 Amaranthus hybridus HOM05D001780 ORTHO05D005322 3.8e-07 57.8 23 95.7
CiPaw.01G148500 Carya illinoinensis HOM05D001780 ORTHO05D005322 3.8e-07 57.8 23 95.7
Ca_01936_v3 Cicer arietinum L. HOM05D001780 ORTHO05D005322 3.8e-07 57.8 23 95.7
Duzib160G0626 Durio zibethinus HOM05D001780 ORTHO05D005322 3.8e-07 57.8 23 95.7
Gohir.A09G080700 Gossypium hirsutum HOM05D001780 ORTHO05D005322 3.8e-07 57.8 23 95.7
Gohir.D09G080700 Gossypium hirsutum HOM05D001780 ORTHO05D005322 3.8e-07 57.8 23 95.7
Gorai.006G096300 Gossypium raimondii HOM05D001780 ORTHO05D005322 3.8e-07 57.8 23 95.7
Lj6g0027734 Lotus japonicus HOM05D001780 ORTHO05D005322 3.8e-07 57.8 23 95.7
Medtr2g436760 Medicago truncatula HOM05D001780 ORTHO05D005322 3.8e-07 57.8 23 95.7
Psat1g153920 Pisum sativum HOM05D001780 ORTHO05D005322 3.8e-07 57.8 23 95.7
Thecc.02G218100 Theobroma cacao HOM05D001780 ORTHO05D005322 3.8e-07 57.8 23 95.7
TPR.G13843 Trifolium pratense HOM05D001780 ORTHO05D005322 3.8e-07 57.8 23 95.7
TPR.G39347 Trifolium pratense HOM05D001780 ORTHO05D005322 3.8e-07 57.8 23 95.7
TAR362G0169 Trochodendron aralioides HOM05D001780 ORTHO05D005322 3.8e-07 57.8 23 95.7
ECA240G0962 Erigeron canadensis HOM05D001780 ORTHO05D005322 6.6e-07 57.0 23 91.3
Lalb_Chr15g0083491 Lupinus albus HOM05D001780 ORTHO05D005322 6.6e-07 57.0 23 95.7
Hund03251 Selenicereus undatus HOM05D001780 ORTHO05D005322 6.6e-07 57.0 23 91.3
HPP92_016436 Vanilla planifolia HOM05D001780 ORTHO05D005322 6.6e-07 57.0 24 91.7
Manes.03G195400 Manihot esculenta HOM05D001780 ORTHO05D005322 8.6e-07 56.6 23 91.3
AL8G22410 Arabidopsis lyrata HOM05D001780 ORTHO05D005322 1.1e-06 56.2 23 95.7
AT5G49030 Arabidopsis thaliana HOM05D001780 ORTHO05D005322 1.1e-06 56.2 23 95.7
BcaC03g17692 Brassica carinata HOM05D001780 ORTHO05D005322 1.1e-06 56.2 23 95.7
Carub.0008s0885 Capsella rubella HOM05D001780 ORTHO05D005322 1.1e-06 56.2 23 95.7
CARHR182680 Cardamine hirsuta HOM05D001780 ORTHO05D005322 1.1e-06 56.2 23 95.7
Ciclev10004211m.g Citrus clementina HOM05D001780 ORTHO05D005322 1.1e-06 56.2 23 95.7
Migut.G00161 Erythranthe guttata HOM05D001780 ORTHO05D005322 1.1e-06 56.2 23 91.3
Thhalv10003524m.g Eutrema salsugineum HOM05D001780 ORTHO05D005322 1.1e-06 56.2 23 95.7
Actinidia40255 Actinidia chinensis HOM05D001780 ORTHO05D005322 1.5e-06 55.8 23 95.7
A06p38600 Brassica napus HOM05D001780 ORTHO05D005322 1.5e-06 55.8 23 91.3
HanXRQChr03g0080971 Helianthus annuus HOM05D001780 ORTHO05D005322 1.5e-06 55.8 23 95.7
Sp2g19410 Schrenkiella parvula HOM05D001780 ORTHO05D005322 1.5e-06 55.8 23 91.3
SEGI_15432 Sequoiadendron giganteum HOM05D001780 ORTHO05D005322 1.5e-06 55.8 23 91.3
Sc13g0003450 Simmondsia chinensis HOM05D001780 ORTHO05D005322 1.5e-06 55.8 23 91.3
CANSAT78G1960 Cannabis sativa HOM05D001780 ORTHO05D005322 1.9e-06 55.5 23 87.0
AUR62014941 Chenopodium quinoa HOM05D001780 ORTHO05D005322 1.9e-06 55.5 23 87.0
AUR62029200 Chenopodium quinoa HOM05D001780 ORTHO05D005322 1.9e-06 55.5 23 87.0
Lsat_1_v5_gn_7_51800 Lactuca sativa HOM05D001780 ORTHO05D022113 2.5e-06 55.1 43 58.1
THA.LOC104818925 Tarenaya hassleriana HOM05D001780 ORTHO05D005322 2.5e-06 55.1 23 91.3
TWI09G1280 Tripterygium wilfordii HOM05D001780 ORTHO05D005322 2.5e-06 55.1 23 95.7
CsaV3_3G014640 Cucumis sativus L. HOM05D001780 ORTHO05D005322 3.3e-06 54.7 23 91.3
Nitab4.5_0000059g0580 Nicotiana tabacum HOM05D001780 ORTHO05D005322 3.3e-06 54.7 23 91.3
Nitab4.5_0000700g0090 Nicotiana tabacum HOM05D001780 ORTHO05D005322 3.3e-06 54.7 23 91.3
Sed0021413 Sechium edule HOM05D001780 ORTHO05D005322 3.3e-06 54.7 23 91.3
PSO170G3623 Papaver somniferum HOM05D001780 ORTHO05D005322 4.2e-06 54.3 23 91.3
PSO210G4510 Papaver somniferum HOM05D001780 ORTHO05D005322 4.2e-06 54.3 23 91.3
Dinv29743 Davidia involucrata HOM05D001780 ORTHO05D005322 5.5e-06 53.9 23 91.3
Phvul.003G105600 Phaseolus vulgaris HOM05D001780 ORTHO05D005322 5.5e-06 53.9 23 82.6
ATR0796G005 Amborella trichopoda HOM05D001780 ORTHO05D005322 7.2e-06 53.5 23 91.3
CAN.G185.34 Capsicum annuum HOM05D001780 ORTHO05D005322 7.2e-06 53.5 23 87.0
Glyma.17G026600 Glycine max HOM05D001780 ORTHO05D005322 7.2e-06 53.5 23 82.6
Peaxi162Scf00048g01820 Petunia axillaris HOM05D001780 ORTHO05D005322 7.2e-06 53.5 23 87.0
Solyc01g080810.3 Solanum lycopersicum HOM05D001780 ORTHO05D005322 7.2e-06 53.5 23 87.0
Sopen01g030670 Solanum pennellii HOM05D001780 ORTHO05D005322 7.2e-06 53.5 23 87.0
PGSC0003DMG400006289 Solanum tuberosum HOM05D001780 ORTHO05D005322 7.2e-06 53.5 23 87.0
VMungo1215G2474 Vigna mungo HOM05D001780 ORTHO05D005322 7.2e-06 53.5 23 82.6


User provided reference genes

Program Settings