Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033118 Camellia sinensis var. sinensis HOM05D000304 ORTHO05D000185 6.2e-55 217.2 111 100.0
Thecc.09G016400 Theobroma cacao HOM05D000304 ORTHO05D000185 9.4e-11 70.5 117 41.9
Dinv40976 Davidia involucrata HOM05D000304 ORTHO05D000185 1.2e-10 70.1 130 40.8
Duzib168G2393 Durio zibethinus HOM05D000304 ORTHO05D000185 3.6e-10 68.6 119 36.1
Haze_21424 Corylus avellana HOM05D000304 ORTHO05D000185 4.6e-10 68.2 125 36.8
Cfa013064 Carpinus fangiana HOM05D000304 ORTHO05D000185 7.9e-10 67.4 125 36.8
Actinidia23102 Actinidia chinensis HOM05D000304 ORTHO05D000185 1.4e-09 66.6 112 40.2
Dinv11671 Davidia involucrata HOM05D000304 ORTHO05D000185 3.0e-09 65.5 118 39.0
MBI14_g37104_MAGBIO Magnolia biondii HOM05D000304 ORTHO05D000185 6.7e-09 64.3 100 41.0
Manes.16G129000 Manihot esculenta HOM05D000304 ORTHO05D000185 6.7e-09 64.3 105 41.9
MBI14_g45550_MAGBIO Magnolia biondii HOM05D000304 ORTHO05D000185 8.8e-09 63.9 97 41.2
Ciclev10009250m.g Citrus clementina HOM05D000304 ORTHO05D000185 1.1e-08 63.5 114 39.5
Dinv11667 Davidia involucrata HOM05D000304 ORTHO05D000185 1.1e-08 63.5 122 37.7
MBI14_g46238_MAGBIO Magnolia biondii HOM05D000304 ORTHO05D000185 1.1e-08 63.5 97 41.2
Medtr1g013790 Medicago truncatula HOM05D000304 ORTHO05D000185 1.9e-08 62.8 102 39.2
COL.COLO4_18944 Corchorus olitorius HOM05D000304 ORTHO05D000185 2.5e-08 62.4 128 37.5
TAR626G0840 Trochodendron aralioides HOM05D000304 ORTHO05D000185 4.3e-08 61.6 121 36.4
BcaC03g15927 Brassica carinata HOM05D000304 ORTHO05D000185 5.7e-08 61.2 107 41.1
A02p23110 Brassica napus HOM05D000304 ORTHO05D000185 5.7e-08 61.2 107 41.1
C02p36880 Brassica napus HOM05D000304 ORTHO05D000185 5.7e-08 61.2 107 41.1
BolC2t09701H Brassica oleracea HOM05D000304 ORTHO05D000185 5.7e-08 61.2 107 41.1
BraA02t07309Z Brassica rapa HOM05D000304 ORTHO05D000185 5.7e-08 61.2 107 41.1
GSVIVG01035884001 Vitis vinifera HOM05D000304 ORTHO05D000185 5.7e-08 61.2 124 39.5
TAR625G1498 Trochodendron aralioides HOM05D000304 ORTHO05D000185 7.4e-08 60.8 117 38.5
Psat6g026680 Pisum sativum HOM05D000304 ORTHO05D000185 9.7e-08 60.5 106 38.7
Glyma.06G062000 Glycine max HOM05D000304 ORTHO05D000185 1.3e-07 60.1 120 34.2
QL02p019013 Quercus lobata HOM05D000304 ORTHO05D000185 1.3e-07 60.1 121 38.0
TAR383G0374 Trochodendron aralioides HOM05D000304 ORTHO05D000185 2.8e-07 58.9 115 37.4
Phvul.001G042100 Phaseolus vulgaris HOM05D000304 ORTHO05D000185 3.7e-07 58.5 114 37.7
TPR.G38899 Trifolium pratense HOM05D000304 ORTHO05D000185 3.7e-07 58.5 104 35.6
BcaB05g25225 Brassica carinata HOM05D000304 ORTHO05D000185 4.8e-07 58.2 109 39.4
Cpa.g.sc127.27 Carica papaya HOM05D000304 ORTHO05D000185 4.8e-07 58.2 136 34.6
Lalb_Chr14g0376101 Lupinus albus HOM05D000304 ORTHO05D000185 4.8e-07 58.2 107 37.4
Atru.chr7.2542 Acer truncatum HOM05D000304 ORTHO05D000185 6.3e-07 57.8 118 35.6
MD15G1039600 Malus domestica HOM05D000304 ORTHO05D000185 6.3e-07 57.8 129 35.7
FvH4_6g28650 Fragaria vesca HOM05D000304 ORTHO05D000185 8.2e-07 57.4 116 39.7
FAN14G0998 Fragaria x ananassa HOM05D000304 ORTHO05D000185 8.2e-07 57.4 116 39.7
MBI14_g05416_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.2e-07 57.4 111 36.9
VMungo0647G0859 Vigna mungo HOM05D000304 ORTHO05D000185 8.2e-07 57.4 114 36.8
arahy.Tifrunner.gnm1.ann1.R1QDN0 Arachis hypogaea HOM05D000304 ORTHO05D000185 1.1e-06 57.0 116 31.0
MSTRG.11179 Avicennia marina HOM05D000304 ORTHO05D000185 1.1e-06 57.0 108 38.0
CiPaw.01G254500 Carya illinoinensis HOM05D000304 ORTHO05D000185 1.1e-06 57.0 114 37.7
FAN02G3369 Fragaria x ananassa HOM05D000304 ORTHO05D000185 1.1e-06 57.0 116 37.9
Gorai.009G062400 Gossypium raimondii HOM05D000304 ORTHO05D000185 1.4e-06 56.6 124 40.3
Oeu027828.1 Olea europaea HOM05D000304 ORTHO05D000185 1.4e-06 56.6 97 39.2
SGA_v2.0_scaffold5G02785 Striga asiatica HOM05D000304 ORTHO05D000185 1.4e-06 56.6 109 35.8
Gohir.D05G061300 Gossypium hirsutum HOM05D000304 ORTHO05D000185 1.8e-06 56.2 124 40.3
arahy.Tifrunner.gnm1.ann1.4JHW71 Arachis hypogaea HOM05D000304 ORTHO05D000185 2.4e-06 55.8 116 31.0
FAN05G1614 Fragaria x ananassa HOM05D000304 ORTHO05D000185 2.4e-06 55.8 114 37.7
Glyma.06G061900 Glycine max HOM05D000304 ORTHO05D000185 2.4e-06 55.8 111 36.9
Gohir.A05G059200 Gossypium hirsutum HOM05D000304 ORTHO05D000185 2.4e-06 55.8 124 38.7
VMungo1309G2372 Vigna mungo HOM05D000304 ORTHO05D000185 2.4e-06 55.8 96 35.4
Aqoxy7G03436 Aquilegia oxysepala HOM05D000304 ORTHO05D000185 3.1e-06 55.5 109 41.3
Gohir.D07G035901 Gossypium hirsutum HOM05D000304 ORTHO05D000185 3.1e-06 55.5 112 37.5
MD00G1143600 Malus domestica HOM05D000304 ORTHO05D000185 3.1e-06 55.5 124 33.1
Medtr3g106060 Medicago truncatula HOM05D000304 ORTHO05D000185 3.1e-06 55.5 112 35.7
Potri.001G044500 Populus trichocarpa HOM05D000304 ORTHO05D000185 3.1e-06 55.5 113 34.5
SalBow6G4247 Salvia bowleyana HOM05D000304 ORTHO05D000185 3.1e-06 55.5 98 40.8
VMungo1309G0790 Vigna mungo HOM05D000304 ORTHO05D000185 3.1e-06 55.5 110 35.5
Prupe.3G098100 Prunus persica HOM05D000304 ORTHO05D000185 4.1e-06 55.1 111 38.7
VMungo0647G1957 Vigna mungo HOM05D000304 ORTHO05D000185 4.1e-06 55.1 95 35.8
FAN09G3457 Fragaria x ananassa HOM05D000304 ORTHO05D000185 5.3e-06 54.7 116 38.8
Nn1g06021 Nelumbo nucifera HOM05D000304 ORTHO05D000185 5.3e-06 54.7 113 37.2
SGA_v2.0_scaffold37G14702 Striga asiatica HOM05D000304 ORTHO05D000185 5.3e-06 54.7 110 38.2
arahy.Tifrunner.gnm1.ann1.9C1IJD Arachis hypogaea HOM05D000304 ORTHO05D000185 6.9e-06 54.3 116 36.2
Manes.11G066500 Manihot esculenta HOM05D000304 ORTHO05D000185 9.1e-06 53.9 110 36.4
Psat6g026720 Pisum sativum HOM05D000304 ORTHO05D000185 9.1e-06 53.9 96 37.5
SalBow7G0190 Salvia bowleyana HOM05D000304 ORTHO05D000185 9.1e-06 53.9 101 36.6


User provided reference genes

Program Settings