Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.9e-286 988.4 479 100.0
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 4.9e-242 840.9 499 82.4
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 2.1e-237 825.5 498 80.9
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 9.0e-236 820.1 522 77.6
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 9.0e-236 820.1 520 77.9
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.5e-235 819.3 554 74.9
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.9e-234 814.3 522 77.8
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.3e-231 806.2 520 77.3
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 4.3e-230 801.2 521 74.9
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 7.4e-230 800.4 520 76.0
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.5e-227 792.7 554 71.5
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 4.5e-227 791.2 520 75.2
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 2.2e-226 788.9 520 74.8
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 9.3e-225 783.5 520 74.0
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 9.3e-225 783.5 520 75.2
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 2.7e-224 781.9 520 74.4
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 7.9e-224 780.4 518 73.9
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 2.3e-223 778.9 518 74.5
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 7.4e-222 773.9 520 74.0
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 1.6e-221 772.7 517 74.1
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 3.7e-221 771.5 520 74.0
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 8.2e-221 770.4 522 73.6
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 1.8e-220 769.2 520 73.3
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 3.1e-220 768.5 520 72.9
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.1e-220 768.5 519 73.6
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 5.3e-220 767.7 519 73.2
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 6.9e-220 767.3 520 73.1
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 5.9e-219 764.2 518 73.4
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.0e-218 763.5 520 74.4
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 1.7e-218 762.7 521 72.7
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 5.0e-218 761.1 520 72.3
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.4e-217 759.6 521 72.9
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 3.2e-217 758.4 521 72.9
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 5.5e-217 757.7 520 71.5
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 5.5e-217 757.7 514 72.8
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 7.2e-217 757.3 522 73.0
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 9.4e-217 756.9 514 72.6
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 1.2e-216 756.5 523 71.1
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 1.2e-216 756.5 520 72.1
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 4.6e-216 754.6 515 72.6
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 4.6e-216 754.6 520 73.5
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 4.6e-216 754.6 515 72.8
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 1.0e-215 753.4 521 71.0
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 1.4e-215 753.1 544 68.8
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.4e-215 753.1 520 71.7
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.4e-215 753.1 499 73.3
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 1.8e-215 752.7 499 73.1
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.3e-215 752.3 520 71.9
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 2.3e-215 752.3 520 71.9
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 2.3e-215 752.3 521 71.6
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 3.0e-215 751.9 520 70.4
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 3.9e-215 751.5 521 71.6
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 3.9e-215 751.5 544 69.5
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 6.7e-215 750.7 521 71.6
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 6.7e-215 750.7 515 71.5
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 1.1e-214 750.0 520 71.0
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 2.0e-214 749.2 519 71.1
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 2.5e-214 748.8 520 71.5
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 4.3e-214 748.0 520 71.7
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 5.7e-214 747.7 521 71.0
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 7.4e-214 747.3 522 71.5
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 7.4e-214 747.3 515 72.0
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 9.7e-214 746.9 521 71.2
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 1.3e-213 746.5 521 70.1
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 1.3e-213 746.5 526 70.3
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 1.7e-213 746.1 520 71.2
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 2.2e-213 745.7 520 71.9
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 2.8e-213 745.3 516 71.1
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 4.8e-213 744.6 510 72.7
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 6.3e-213 744.2 530 70.6
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 8.2e-213 743.8 520 71.7
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 1.1e-212 743.4 520 71.7
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.2e-211 740.0 528 69.7
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.2e-211 740.0 528 69.7
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.5e-211 739.6 528 69.9
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 1.5e-211 739.6 520 69.8
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.4e-211 738.4 528 69.5
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 5.9e-211 737.6 517 71.2
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 1.0e-210 736.9 466 77.9
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 1.3e-210 736.5 521 69.1
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 2.9e-210 735.3 513 70.6
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 3.8e-210 734.9 512 70.5
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 5.0e-210 734.6 524 68.7
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 6.5e-210 734.2 521 68.9
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 6.5e-210 734.2 521 68.9
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 1.1e-209 733.4 521 70.1
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 1.4e-209 733.0 523 68.5
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 1.4e-209 733.0 521 68.9
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 2.5e-209 732.3 520 68.7
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 2.5e-209 732.3 524 68.3
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 1.6e-208 729.6 530 68.9
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 2.7e-208 728.8 520 68.5
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 2.7e-208 728.8 520 68.5
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 3.6e-208 728.4 520 68.5
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 4.7e-208 728.0 515 70.1
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 4.7e-208 728.0 515 70.1
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 4.7e-208 728.0 521 69.7
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 2.3e-207 725.7 516 69.4
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 3.9e-207 724.9 521 69.3
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 6.7e-207 724.2 521 69.3
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 4.4e-206 721.5 519 68.8
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 4.4e-206 721.5 521 68.3
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 9.7e-206 720.3 550 66.7
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 4.1e-204 714.9 492 71.5
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 9.1e-204 713.8 513 70.0
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 1.2e-203 713.4 514 67.9
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 4.5e-203 711.4 516 69.0
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 1.0e-202 710.3 499 71.5
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 1.7e-202 709.5 520 69.0
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 5.0e-202 708.0 521 67.6
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 1.6e-200 703.0 466 75.1
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 2.1e-200 702.6 519 66.5
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 2.3e-199 699.1 524 67.2
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 3.0e-199 698.7 519 66.5
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 3.0e-199 698.7 520 69.2
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 4.4e-198 694.9 481 73.2
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 3.7e-197 691.8 522 67.4
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 2.4e-196 689.1 467 73.7
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 3.1e-196 688.7 470 72.6
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 4.1e-196 688.3 500 69.4
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 3.5e-195 685.3 521 65.8
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 3.5e-195 685.3 515 66.4
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 4.5e-195 684.9 521 65.6
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 2.9e-194 682.2 497 67.6
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 3.8e-194 681.8 521 65.3
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 5.0e-194 681.4 509 67.8
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 2.5e-193 679.1 541 63.8
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 4.2e-193 678.3 517 66.0
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 7.2e-193 677.6 464 72.2
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 1.2e-192 676.8 499 67.1
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 1.6e-192 676.4 499 66.7
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 3.0e-191 672.2 490 68.8
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 1.7e-189 666.4 466 70.2
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 1.1e-188 663.7 472 69.3
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 1.2e-187 660.2 521 63.9
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 2.0e-187 659.4 523 63.7
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.3e-186 656.8 520 64.2
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 3.8e-186 655.2 521 63.3
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 6.5e-186 654.4 520 63.3
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 4.9e-181 638.3 542 61.1
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 6.6e-170 601.3 521 59.5
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 1.0e-167 594.0 346 83.5
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 3.2e-164 582.4 542 57.2
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 8.1e-160 567.8 480 62.1
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 6.6e-154 548.1 354 74.9
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 1.9e-153 546.6 480 60.2
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 3.4e-150 535.8 382 70.4
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 7.6e-150 534.6 485 55.9
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 1.2e-144 517.3 446 56.5
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 1.3e-138 497.3 470 53.2
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 3.8e-133 479.2 297 77.8
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 2.4e-127 459.9 521 47.8
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 2.1e-120 436.8 239 84.5
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 2.2e-109 400.2 265 75.1
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 6.5e-109 398.7 285 67.4
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 9.7e-105 384.8 272 71.7
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 1.0e-98 364.8 272 68.8
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 2.8e-96 356.7 265 67.5
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 1.2e-94 351.3 229 71.2
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.0e-90 338.2 392 49.5
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 1.5e-81 307.8 244 65.6
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 4.6e-54 216.5 131 75.6
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 2.3e-53 214.2 455 31.4
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 2.9e-40 170.6 410 29.8
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 1.6e-38 164.9 134 57.5
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 2.7e-38 164.1 109 69.7
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.8e-35 154.1 181 50.8
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 6.2e-27 126.3 86 72.1
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 8.7e-21 105.9 59 74.6
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.3e-20 103.6 138 50.0
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 9.6e-20 102.4 60 73.3
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.4e-15 86.7 167 38.9
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 2.1e-11 74.7 110 37.3
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 3.8e-08 63.9 47 63.8
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 2.1e-06 58.2 37 67.6


User provided reference genes

Program Settings