Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 5.3e-148 527.7 275 100.0
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 2.0e-91 339.7 268 71.3
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 1.7e-90 336.7 265 72.5
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.4e-87 327.0 258 70.9
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 8.9e-87 324.3 219 79.0
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 1.3e-82 310.5 262 67.6
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 3.9e-82 308.9 270 63.7
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.9e-81 306.6 256 68.8
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 2.8e-80 302.8 211 74.9
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 1.4e-79 300.4 219 71.7
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 5.2e-79 298.5 259 64.1
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 6.8e-79 298.1 249 65.5
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 8.9e-79 297.7 261 64.8
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 8.9e-79 297.7 251 67.7
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.5e-78 297.0 256 66.4
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 1.5e-78 297.0 201 74.1
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 5.8e-78 295.0 245 66.5
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 9.9e-78 294.3 222 68.9
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 2.9e-77 292.7 252 61.5
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 3.7e-77 292.4 251 63.7
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 3.7e-77 292.4 243 64.6
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 4.9e-77 292.0 238 68.1
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 6.4e-77 291.6 235 68.1
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 6.4e-77 291.6 231 66.2
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.1e-76 290.8 280 63.6
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.9e-76 290.0 225 71.6
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 2.4e-76 289.7 207 71.5
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 4.1e-76 288.9 255 61.2
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 4.1e-76 288.9 205 73.2
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 5.4e-76 288.5 265 61.5
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 5.4e-76 288.5 260 61.9
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 1.6e-75 287.0 229 66.8
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 1.6e-75 287.0 284 60.2
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 2.1e-75 286.6 223 67.7
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 2.1e-75 286.6 252 63.5
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 2.1e-75 286.6 208 70.7
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 3.5e-75 285.8 259 61.8
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 4.6e-75 285.4 221 67.9
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 4.6e-75 285.4 232 66.8
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 1.7e-74 283.5 263 61.2
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.7e-74 283.5 249 63.1
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 1.7e-74 283.5 231 67.5
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 2.3e-74 283.1 236 64.8
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.3e-74 283.1 250 60.8
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.9e-74 282.3 249 62.7
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 5.1e-74 282.0 208 70.7
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 5.1e-74 282.0 255 59.6
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 5.1e-74 282.0 231 67.1
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 8.6e-74 281.2 259 62.9
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 8.6e-74 281.2 223 66.4
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 8.6e-74 281.2 204 69.1
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 8.6e-74 281.2 255 60.0
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 8.6e-74 281.2 203 69.0
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.1e-73 280.8 256 60.5
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.1e-73 280.8 207 70.5
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.1e-73 280.8 255 60.0
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 1.9e-73 280.0 197 71.1
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 2.5e-73 279.6 236 64.4
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 2.5e-73 279.6 203 70.0
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 2.5e-73 279.6 218 64.2
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 2.5e-73 279.6 262 57.6
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 3.3e-73 279.3 201 71.1
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 3.3e-73 279.3 205 68.8
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 4.3e-73 278.9 253 59.7
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 5.6e-73 278.5 255 60.0
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 7.3e-73 278.1 257 61.9
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 9.6e-73 277.7 203 70.4
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 9.6e-73 277.7 218 68.3
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 1.6e-72 276.9 249 61.4
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.6e-72 276.9 208 66.3
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 2.8e-72 276.2 207 69.6
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 8.1e-72 274.6 173 79.2
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 8.1e-72 274.6 248 61.7
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 2.4e-71 273.1 213 67.6
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 4.4e-70 268.9 251 59.0
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 5.8e-70 268.5 202 66.8
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 5.8e-70 268.5 225 63.6
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 5.8e-70 268.5 257 57.2
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 1.3e-69 267.3 174 78.7
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 3.8e-69 265.8 204 67.2
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 4.9e-69 265.4 203 67.0
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 1.1e-68 264.2 248 57.3
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.1e-68 264.2 247 59.5
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.1e-68 264.2 179 73.2
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 1.4e-68 263.8 203 67.5
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 3.2e-68 262.7 216 63.9
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 4.2e-68 262.3 181 70.7
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 4.2e-68 262.3 238 59.7
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 5.4e-68 261.9 174 75.3
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 7.1e-68 261.5 205 65.9
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.2e-67 260.8 208 63.9
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 1.2e-67 260.8 175 74.3
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 1.2e-67 260.8 174 75.9
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 2.1e-67 260.0 218 64.7
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 3.5e-67 259.2 202 65.3
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 4.6e-67 258.8 202 67.3
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.0e-66 257.7 209 64.6
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 1.7e-66 256.9 205 66.3
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 6.6e-66 255.0 202 66.3
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 8.7e-66 254.6 213 61.5
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 8.7e-66 254.6 206 66.0
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 8.7e-66 254.6 202 66.3
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 1.1e-65 254.2 205 65.4
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 1.5e-65 253.8 205 65.9
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 1.5e-65 253.8 205 65.9
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 3.3e-65 252.7 206 65.0
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 3.3e-65 252.7 220 62.7
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 4.3e-65 252.3 220 62.7
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 1.3e-64 250.8 205 64.4
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 1.3e-64 250.8 205 64.4
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 2.1e-64 250.0 203 62.1
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 4.4e-62 242.3 174 70.1
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 2.7e-59 233.0 261 54.0
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 1.8e-50 203.8 210 54.8
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 3.9e-50 202.6 203 52.7
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.1e-49 201.1 177 57.1
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 2.5e-49 199.9 127 78.7
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 4.3e-49 199.1 127 79.5
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 4.8e-48 195.7 211 49.3
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 5.8e-46 188.7 173 54.9
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.7e-43 179.9 162 59.3
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.3e-42 177.6 232 45.3
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 2.3e-42 176.8 127 69.3
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.1e-39 167.9 175 53.1
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 1.0e-37 161.4 120 66.7
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 4.8e-24 115.9 80 67.5
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 7.9e-19 98.6 71 63.4
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 1.0e-18 98.2 78 67.9
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 8.8e-18 95.1 104 48.1
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 1.7e-16 90.9 104 45.2
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 4.1e-15 86.3 201 29.4
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 2.0e-14 84.0 133 42.1
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.9e-12 77.4 215 36.3
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 4.2e-12 76.3 209 28.2
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 4.0e-10 69.7 101 36.6
Os08g0411000 Oryza sativa ssp. japonica HOM05D000911 ORTHO05D295734 4.5e-06 56.2 115 33.9


User provided reference genes

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