Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 5.8e-256 887.1 464 100.0
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 4.3e-251 870.9 465 98.3
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 3.6e-221 771.5 475 81.5
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 2.9e-207 725.3 397 87.9
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 8.5e-207 723.8 397 87.4
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.6e-205 719.5 466 78.1
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 4.0e-204 714.9 482 78.8
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 1.8e-196 689.5 464 74.4
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 7.2e-190 667.5 397 80.6
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 3.7e-186 655.2 468 70.9
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 8.3e-186 654.1 472 69.3
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 1.8e-185 652.9 464 69.8
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 4.1e-185 651.7 464 69.8
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 7.0e-185 651.0 470 69.8
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 9.1e-185 650.6 468 73.7
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 7.7e-184 647.5 471 72.4
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 1.7e-183 646.4 467 73.9
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 3.3e-182 642.1 468 71.8
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 4.2e-182 641.7 464 69.4
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 9.5e-182 640.6 473 72.9
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 1.2e-181 640.2 466 69.3
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 1.6e-181 639.8 465 70.1
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 2.8e-181 639.0 470 67.7
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 3.6e-181 638.6 484 66.7
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 8.0e-181 637.5 467 68.3
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 1.4e-180 636.7 470 67.2
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 1.8e-180 636.3 470 67.4
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 2.3e-180 636.0 476 69.1
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 6.8e-180 634.4 467 69.8
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 2.6e-179 632.5 466 69.5
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 5.7e-179 631.3 465 67.7
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 9.8e-179 630.6 478 67.2
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 9.8e-179 630.6 468 69.2
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.3e-178 630.2 378 78.6
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.3e-178 630.2 468 72.4
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 1.7e-178 629.8 472 68.0
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 1.1e-177 627.1 464 67.7
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.1e-177 627.1 385 77.1
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 1.8e-177 626.3 471 67.3
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 1.6e-176 623.2 464 67.0
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 2.0e-176 622.9 464 68.1
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 2.0e-176 622.9 468 68.4
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 2.7e-176 622.5 464 65.9
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 7.8e-176 620.9 464 67.2
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 2.3e-175 619.4 464 67.2
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 2.3e-175 619.4 464 69.2
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 3.9e-175 618.6 386 74.4
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 8.6e-175 617.5 474 67.1
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 9.5e-174 614.0 457 68.5
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.2e-173 613.6 472 67.2
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 2.1e-173 612.8 415 72.0
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 8.0e-173 610.9 392 74.5
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 8.0e-173 610.9 464 64.9
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 8.0e-173 610.9 464 64.9
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 2.3e-172 609.4 368 78.8
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 4.0e-172 608.6 407 71.5
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.2e-171 607.1 470 65.1
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 2.6e-171 605.9 392 71.9
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 5.8e-171 604.7 395 72.2
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 2.9e-170 602.4 472 68.6
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 1.1e-169 600.5 394 73.6
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 2.4e-169 599.4 483 62.3
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 1.6e-168 596.7 335 83.0
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 1.6e-168 596.7 404 72.8
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 2.7e-168 595.9 431 68.2
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 7.8e-168 594.3 431 71.0
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 3.0e-167 592.4 431 68.2
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 5.0e-167 591.7 484 65.9
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 2.5e-166 589.3 381 73.8
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 5.6e-166 588.2 465 66.0
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 1.6e-165 586.6 390 73.1
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 3.6e-165 585.5 431 70.5
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 3.6e-165 585.5 427 69.1
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 3.6e-165 585.5 432 69.0
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 8.1e-165 584.3 464 64.4
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 1.4e-164 583.6 431 70.1
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 1.8e-164 583.2 483 65.8
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 1.8e-164 583.2 389 73.0
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 7.5e-163 577.8 401 71.1
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 7.5e-163 577.8 473 62.6
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 2.4e-161 572.8 466 62.7
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 2.4e-161 572.8 368 73.1
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 8.6e-159 564.3 372 71.5
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 3.3e-158 562.4 368 69.6
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 5.6e-158 561.6 417 68.6
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 1.2e-157 560.5 334 76.6
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 1.4e-156 557.0 446 61.9
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 2.9e-154 549.3 518 57.7
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 2.5e-150 536.2 459 63.0
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 6.2e-149 531.6 398 66.6
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 1.7e-146 523.5 424 64.4
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 3.5e-144 515.8 318 75.8
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.9e-142 510.0 463 60.9
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 4.3e-142 508.8 389 66.6
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 2.8e-141 506.1 431 61.0
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 2.0e-139 500.0 459 58.2
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 2.4e-137 493.0 281 82.2
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 1.1e-134 484.2 385 62.3
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 4.0e-132 475.7 391 66.0
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 2.6e-131 473.0 468 56.2
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 5.5e-129 465.3 468 55.8
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 7.1e-129 464.9 432 59.7
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 6.2e-125 451.8 358 59.8
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 1.3e-119 434.1 467 53.1
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.9e-118 430.3 274 77.4
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 4.8e-117 425.6 341 68.9
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 2.7e-96 356.7 217 74.2
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 4.7e-96 355.9 209 78.0
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 6.1e-96 355.5 331 60.1
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 2.0e-91 340.5 384 46.6
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 2.6e-91 340.1 361 49.9
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.7e-90 337.4 305 59.0
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 1.6e-83 314.3 398 42.7
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 9.4e-81 305.1 175 81.7
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 4.0e-79 299.7 172 81.4
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 2.9e-74 283.5 301 52.8
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 5.0e-74 282.7 263 58.9
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.9e-73 280.8 263 58.2
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.1e-72 277.3 255 57.6
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 8.0e-72 275.4 279 47.0
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 5.7e-70 269.2 262 55.3
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.5e-65 253.8 228 69.3
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 2.4e-60 237.3 178 67.4
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 3.6e-56 223.4 292 43.2
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 6.8e-47 192.6 277 44.4
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 6.2e-40 169.5 95 81.1
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 3.2e-36 157.1 140 62.1
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.2e-35 155.2 225 43.1
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 5.1e-34 149.8 88 77.3
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 5.2e-31 139.8 101 67.3
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 1.9e-28 131.3 75 81.3
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 1.3e-24 118.6 364 30.2
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 4.0e-23 113.6 63 85.7
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 4.0e-23 113.6 130 49.2
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.7e-21 108.2 69 73.9
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 2.6e-14 84.3 71 62.0
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 4.5e-14 83.6 63 63.5
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 1.6e-11 75.1 56 62.5
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 2.3e-10 71.2 81 43.2
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 7.4e-09 66.2 39 71.8
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 2.4e-07 61.2 32 90.6
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 3.1e-07 60.8 52 55.8
Lsat_1_v5_gn_3_115920 Lactuca sativa HOM05D005258 ORTHO05D006525 7.6e-06 56.2 100 41.0


User provided reference genes

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