Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 7.2e-33 143.3 70 100.0
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 7.2e-33 143.3 70 100.0
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 6.1e-16 87.0 75 65.3
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 3.0e-15 84.7 74 63.5
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 1.1e-14 82.8 70 61.4
Prupe.3G175200 Prunus persica HOM05D006911 ORTHO05D006663 1.5e-14 82.4 70 62.9
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 2.0e-14 82.0 72 59.7
Potri.005G203800 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.0e-14 82.0 74 59.5
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 2.6e-14 81.6 64 64.1
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 2.6e-14 81.6 72 61.1
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 3.3e-14 81.3 73 63.0
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 4.4e-14 80.9 69 65.2
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 4.4e-14 80.9 69 65.2
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 4.4e-14 80.9 69 65.2
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 4.4e-14 80.9 69 63.8
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 7.4e-14 80.1 72 62.5
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 7.4e-14 80.1 62 62.9
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 1.3e-13 79.3 71 59.2
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 1.3e-13 79.3 71 59.2
MD17G1137200 Malus domestica HOM05D006911 ORTHO05D006663 1.7e-13 79.0 70 61.4
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.7e-13 79.0 72 62.5
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 8.2e-13 76.6 71 60.6
Sed0027001 Sechium edule HOM05D006911 ORTHO05D006663 1.1e-12 76.3 67 61.2
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.8e-12 75.5 62 62.9
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.8e-12 75.5 71 60.6
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.8e-12 75.5 71 60.6
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 2.4e-12 75.1 71 62.0
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 3.1e-12 74.7 72 56.9
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 3.1e-12 74.7 56 69.6
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 5.3e-12 73.9 72 55.6
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 7.0e-12 73.6 71 60.6
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 7.0e-12 73.6 72 55.6
Gohir.D11G163600 Gossypium hirsutum HOM05D006911 ORTHO05D006663 9.1e-12 73.2 72 58.3
Gorai.007G174300 Gossypium raimondii HOM05D006911 ORTHO05D006663 9.1e-12 73.2 72 58.3
Gohir.A11G156500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.2e-11 72.8 69 59.4
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 1.6e-11 72.4 70 60.0
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 2.0e-11 72.0 50 72.0
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 2.6e-11 71.6 70 60.0
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 3.5e-11 71.2 70 55.7
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 4.5e-11 70.9 72 54.2
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 7.7e-11 70.1 71 56.3
Potri.002G058400 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.3e-10 69.3 74 54.1
Glyma.08G308500 Glycine max HOM05D006911 ORTHO05D006663 2.2e-10 68.6 66 56.1
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 2.9e-10 68.2 71 50.7
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 6.5e-10 67.0 50 68.0
Cpa.g.sc50.102 Carica papaya HOM05D006911 ORTHO05D006663 8.5e-10 66.6 70 55.7
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 8.5e-10 66.6 71 54.9
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 1.1e-09 66.2 73 53.4
Migut.M00927 Erythranthe guttata HOM05D006911 ORTHO05D006663 1.1e-09 66.2 58 60.3
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.1e-09 66.2 71 54.9
Phvul.006G031600 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 1.1e-09 66.2 66 51.5
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 1.9e-09 65.5 72 52.8
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 1.9e-09 65.5 67 56.7
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 2.5e-09 65.1 72 52.8
TWI14G1424 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 9.4e-09 63.2 67 52.2
Eucgr.A02012 Eucalyptus grandis HOM05D006911 ORTHO05D006663 1.6e-08 62.4 85 42.4
Migut.H01374 Erythranthe guttata HOM05D006911 ORTHO05D006663 2.1e-08 62.0 48 72.9
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 2.1e-08 62.0 52 57.7
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 2.1e-08 62.0 69 50.7
SalBow7G2931 Salvia bowleyana HOM05D006911 ORTHO05D006663 3.6e-08 61.2 52 57.7
Oeu052383.1 Olea europaea HOM05D006911 ORTHO05D006663 4.7e-08 60.8 52 59.6
PGR083G1670 Punica granatum HOM05D006911 ORTHO05D006663 6.1e-08 60.5 70 52.9
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 8.0e-08 60.1 70 51.4
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 8.0e-08 60.1 70 57.1
Oeu040961.1 Olea europaea HOM05D006911 ORTHO05D006663 1.0e-07 59.7 37 70.3
THA.LOC104800829 Tarenaya hassleriana HOM05D006911 ORTHO05D006663 1.0e-07 59.7 57 57.9
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 1.4e-07 59.3 67 47.8
Sp1g05240 Schrenkiella parvula HOM05D006911 ORTHO05D006663 1.8e-07 58.9 87 47.1
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 2.3e-07 58.5 53 54.7
Thhalv10009210m.g Eutrema salsugineum HOM05D006911 ORTHO05D006663 2.3e-07 58.5 50 58.0
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 2.3e-07 58.5 76 46.1
Lalb_Chr04g0248851 Lupinus albus HOM05D006911 ORTHO05D006663 4.0e-07 57.8 65 53.8
Nitab4.5_0001040g0170 Nicotiana tabacum HOM05D024954 ORTHO05D006663 4.0e-07 57.8 50 60.0
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 5.2e-07 57.4 50 60.0
Manes.10G042300 Manihot esculenta HOM05D006911 ORTHO05D006663 6.7e-07 57.0 60 50.0
Aqoxy6G00602 Aquilegia oxysepala HOM05D006911 ORTHO05D006663 8.8e-07 56.6 69 50.7
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 8.8e-07 56.6 67 50.7
Hma1.2p1_0137F.1_g062460 Hydrangea macrophylla HOM05D006911 ORTHO05D006663 8.8e-07 56.6 56 57.1
C05p04730 Brassica napus HOM05D006911 ORTHO05D006663 1.5e-06 55.8 52 51.9
BolC5t29245H Brassica oleracea HOM05D006911 ORTHO05D006663 1.5e-06 55.8 52 51.9
BraA10t42779Z Brassica rapa HOM05D006911 ORTHO05D006663 2.6e-06 55.1 52 51.9
AL1G16490 Arabidopsis lyrata HOM05D006911 ORTHO05D006663 3.3e-06 54.7 58 48.3
Carub.0008s0161 Capsella rubella HOM05D010376 ORTHO05D006663 3.3e-06 54.7 69 43.5
BcaB02g06798 Brassica carinata HOM05D006911 ORTHO05D006663 4.4e-06 54.3 58 46.6
Cc09_g08880 Coffea canephora HOM05D006911 ORTHO05D006663 4.4e-06 54.3 57 54.4
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 4.4e-06 54.3 48 54.2
PSO541G4839 Papaver somniferum HOM05D006911 ORTHO05D006663 4.4e-06 54.3 36 72.2
ATR0585G110 Amborella trichopoda HOM05D006911 ORTHO05D006663 5.7e-06 53.9 73 42.5
Carub.0001s0584 Capsella rubella HOM05D006911 ORTHO05D006663 5.7e-06 53.9 53 52.8
DCAR_007899 Daucus carota HOM05D006911 ORTHO05D006663 5.7e-06 53.9 34 73.5
Lj6g0027673 Lotus japonicus HOM05D006911 ORTHO05D006663 5.7e-06 53.9 73 50.7
CARHR006090 Cardamine hirsuta HOM05D006911 ORTHO05D006663 7.5e-06 53.5 54 51.9
Sed0015743 Sechium edule HOM05D006911 ORTHO05D006663 7.5e-06 53.5 51 60.8
Aa31LG1G7540 Aethionema arabicum HOM05D006911 ORTHO05D006663 9.7e-06 53.1 46 52.2
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 9.7e-06 53.1 73 47.9
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 9.7e-06 53.1 66 47.0
Sed0011251 Sechium edule HOM05D006911 ORTHO05D006663 9.7e-06 53.1 60 51.7


User provided reference genes

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