Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.7e-129 464.9 244 100.0
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 3.7e-100 368.6 244 83.2
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.6e-95 353.2 244 78.7
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.9e-88 329.7 241 75.9
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 9.3e-88 327.4 241 75.5
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 4.6e-87 325.1 245 75.1
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 1.1e-80 303.9 239 70.7
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.0e-78 297.4 239 72.0
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 2.3e-78 296.2 251 67.7
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 5.1e-78 295.0 218 74.3
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.9e-77 293.1 245 66.1
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 2.5e-77 292.7 247 66.0
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 2.5e-77 292.7 246 66.3
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.3e-76 290.4 242 68.2
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.7e-76 290.0 242 66.9
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 2.2e-76 289.7 248 68.1
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 3.7e-76 288.9 242 68.2
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 1.1e-75 287.3 243 65.8
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 2.4e-75 286.2 270 61.1
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 1.2e-74 283.9 232 67.2
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 2.6e-74 282.7 244 66.0
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 2.9e-73 279.3 247 64.4
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 5.0e-73 278.5 242 64.9
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 6.5e-73 278.1 246 66.3
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 3.2e-72 275.8 246 64.2
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.6e-71 273.5 246 65.4
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 2.7e-71 272.7 244 64.8
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 2.7e-71 272.7 246 64.2
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 2.7e-71 272.7 242 64.9
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 3.6e-71 272.3 244 63.9
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 6.1e-71 271.6 242 65.7
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 6.1e-71 271.6 194 75.8
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 6.1e-71 271.6 245 65.7
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 6.1e-71 271.6 242 63.6
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.0e-70 270.8 244 63.5
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 1.0e-70 270.8 244 63.1
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 3.9e-70 268.9 249 62.7
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 1.5e-69 266.9 263 61.6
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 1.5e-69 266.9 246 64.6
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 2.0e-69 266.5 236 66.5
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 4.4e-69 265.4 242 64.5
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 5.7e-69 265.0 242 65.7
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 5.7e-69 265.0 242 63.6
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 7.4e-69 264.6 245 63.3
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 9.7e-69 264.2 245 63.7
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 1.7e-68 263.5 242 64.0
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.7e-68 263.5 245 62.4
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 1.7e-68 263.5 245 63.3
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 1.7e-68 263.5 245 63.3
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.7e-68 263.5 190 73.7
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 2.2e-68 263.1 242 63.2
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 2.2e-68 263.1 244 62.3
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 3.7e-68 262.3 250 62.4
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 4.8e-68 261.9 246 61.8
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 6.3e-68 261.5 258 61.6
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.8e-67 260.0 246 61.8
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.4e-67 259.6 245 62.0
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 2.4e-67 259.6 245 62.9
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 5.3e-67 258.5 248 63.7
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 3.4e-66 255.8 206 70.4
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 1.3e-65 253.8 243 62.1
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 2.9e-65 252.7 207 67.1
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 3.8e-65 252.3 246 61.4
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 5.0e-65 251.9 202 67.8
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 8.5e-65 251.1 200 68.0
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 1.1e-64 250.8 262 58.4
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 3.2e-64 249.2 244 59.8
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 3.2e-64 249.2 244 59.8
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 5.5e-64 248.4 248 59.7
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 7.2e-64 248.1 177 74.0
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 9.4e-64 247.7 227 62.1
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 1.6e-63 246.9 238 60.9
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.6e-63 246.9 255 61.2
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 2.1e-63 246.5 245 60.4
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 8.0e-63 244.6 250 60.4
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 8.0e-63 244.6 250 60.4
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.4e-62 243.8 245 60.0
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 1.4e-62 243.8 253 60.5
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 1.8e-62 243.4 237 60.3
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 3.9e-62 242.3 246 60.2
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 5.2e-62 241.9 316 50.0
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 5.2e-62 241.9 236 60.6
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 6.7e-62 241.5 248 59.3
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 6.7e-62 241.5 245 59.6
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 8.8e-62 241.1 245 59.6
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 1.1e-61 240.7 246 60.6
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.1e-61 240.7 188 69.1
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.1e-61 240.7 271 56.1
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 2.0e-61 240.0 195 68.7
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 3.3e-61 239.2 243 60.5
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 7.4e-61 238.0 178 71.9
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 9.7e-61 237.7 188 66.5
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 1.7e-60 236.9 247 57.9
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 3.7e-60 235.7 208 65.9
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 6.3e-60 235.0 191 69.1
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 3.1e-59 232.6 241 58.9
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 5.3e-59 231.9 239 59.4
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 2.9e-57 226.1 250 56.4
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 2.5e-56 223.0 258 55.4
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 4.0e-54 215.7 210 59.5
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.5e-53 213.8 211 60.7
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.5e-53 213.8 184 64.7
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 5.7e-53 211.8 175 66.3
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 9.7e-53 211.1 186 60.8
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 2.0e-50 203.4 158 72.2
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.5e-48 197.2 193 57.5
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.5e-48 197.2 181 64.6
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.9e-48 196.8 222 56.3
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 4.7e-47 192.2 187 58.8
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 8.0e-47 191.4 245 49.8
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 2.8e-39 166.4 180 53.3
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 8.0e-39 164.9 131 71.0
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 2.6e-37 159.8 258 43.8
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 6.3e-36 155.2 212 47.6
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.5e-34 149.1 101 73.3
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 5.9e-34 148.7 145 57.9
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.9e-33 146.4 101 72.3
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.9e-32 143.7 101 70.3
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.2e-31 141.0 95 71.6
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 4.7e-31 139.0 163 50.3
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 1.8e-30 137.1 193 44.6
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 1.5e-29 134.0 191 44.5
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 2.6e-29 133.3 191 44.0
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 5.8e-29 132.1 192 42.2
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 3.9e-25 119.4 189 42.9
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.5e-24 117.5 73 76.7
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.2e-23 114.4 93 68.8
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 3.6e-23 112.8 104 64.4
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 8.9e-22 108.2 160 45.0
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 1.2e-21 107.8 223 37.2
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 1.5e-21 107.5 76 68.4
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 2.0e-21 107.1 117 50.4
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 8.3e-20 101.7 193 40.9
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 6.0e-18 95.5 89 60.7
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 7.3e-16 88.6 122 46.7
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 4.0e-14 82.8 103 46.6
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 6.8e-14 82.0 156 37.2
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 2.9e-12 76.6 140 39.3
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 1.2e-10 71.2 127 37.8
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 1.9e-08 63.9 51 68.6
Migut.H01199 Erythranthe guttata HOM05D005346 ORTHO05D007051 2.1e-07 60.5 101 42.6
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 2.8e-07 60.1 53 64.2


User provided reference genes

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