Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.8e-71 270.8 136 100.0
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 9.3e-29 130.6 135 60.7
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.0e-27 125.6 138 59.4
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.5e-26 122.5 136 52.9
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 7.4e-26 120.9 135 54.8
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 9.7e-26 120.6 139 57.6
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.6e-25 119.8 134 55.2
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 6.9e-24 114.4 133 54.1
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.2e-23 113.6 135 51.1
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.4e-23 112.1 141 51.8
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 4.5e-23 111.7 133 55.6
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.7e-22 109.8 143 47.6
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 8.5e-22 107.5 140 47.1
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.1e-21 107.1 135 53.3
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 1.1e-21 107.1 152 45.4
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 4.6e-20 101.7 104 57.7
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 6.1e-20 101.3 131 48.1
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 3.0e-19 99.0 138 48.6
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 5.1e-19 98.2 137 48.9
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.5e-18 96.7 134 50.7
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.9e-18 96.3 135 49.6
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 2.5e-18 95.9 151 47.0
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 3.7e-17 92.0 132 46.2
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 1.1e-16 90.5 133 44.4
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.8e-16 89.7 147 44.9
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 4.1e-16 88.6 149 43.0
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 4.1e-16 88.6 157 42.0
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 5.3e-16 88.2 157 43.3
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 9.1e-16 87.4 140 42.1
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 1.5e-15 86.7 130 46.2
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 5.9e-15 84.7 158 43.0
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 1.0e-14 84.0 129 45.0
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 1.3e-14 83.6 127 48.8
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.3e-14 83.6 144 43.8
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 1.3e-14 83.6 60 73.3
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 2.2e-14 82.8 145 39.3
Sabra06G0026200 Salix brachista HOM05D002974 ORTHO05D002992 5.0e-14 81.6 113 50.4
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 2.5e-13 79.3 135 43.7
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 2.5e-13 79.3 128 40.6
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 4.2e-13 78.6 157 41.4
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 7.2e-13 77.8 157 40.8
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 1.2e-12 77.0 157 38.9
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 2.7e-12 75.9 142 46.5
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 2.7e-12 75.9 129 41.9
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 3.6e-12 75.5 133 37.6
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 3.6e-12 75.5 129 40.3
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 7.9e-12 74.3 131 42.0
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 7.9e-12 74.3 148 37.2
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 1.8e-11 73.2 135 44.4
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 5.1e-11 71.6 58 65.5
Rhsim04G0111200 Rhododendron simsii HOM05D002974 ORTHO05D002992 5.1e-11 71.6 102 47.1
Rhsim04G0112500 Rhododendron simsii HOM05D002974 ORTHO05D002992 5.1e-11 71.6 102 47.1
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 6.7e-11 71.2 145 37.9
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 8.8e-11 70.9 128 42.2
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 8.8e-11 70.9 128 42.2
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 8.8e-11 70.9 133 41.4
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 8.8e-11 70.9 136 42.6
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 8.8e-11 70.9 123 40.7
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 8.8e-11 70.9 123 40.7
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 1.5e-10 70.1 127 41.7
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 1.5e-10 70.1 127 41.7
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 1.5e-10 70.1 75 58.7
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 1.5e-10 70.1 127 40.2
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 2.0e-10 69.7 128 41.4
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 2.0e-10 69.7 138 39.9
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 2.6e-10 69.3 131 42.7
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 2.6e-10 69.3 126 38.9
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 4.4e-10 68.6 133 38.3
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 4.4e-10 68.6 129 39.5
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 5.7e-10 68.2 127 42.5
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 7.4e-10 67.8 157 37.6
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 7.4e-10 67.8 137 40.9
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 9.7e-10 67.4 127 41.7
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 9.7e-10 67.4 136 41.9
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 9.7e-10 67.4 166 37.3
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 1.3e-09 67.0 123 40.7
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.3e-09 67.0 100 40.0
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 1.3e-09 67.0 138 37.7
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 1.7e-09 66.6 153 35.3
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.7e-09 66.6 109 45.0
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.7e-09 66.6 126 42.9
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 2.2e-09 66.2 129 41.1
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 2.8e-09 65.9 115 43.5
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 3.7e-09 65.5 128 37.5
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 3.7e-09 65.5 109 45.9
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 3.7e-09 65.5 137 38.7
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 4.8e-09 65.1 141 40.4
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 4.8e-09 65.1 135 38.5
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 4.8e-09 65.1 122 41.8
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 4.8e-09 65.1 122 41.8
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 4.8e-09 65.1 108 40.7
Dinv12041 Davidia involucrata HOM05D002974 ORTHO05D002992 4.8e-09 65.1 79 51.9
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 4.8e-09 65.1 130 38.5
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.8e-09 65.1 109 45.0
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 4.8e-09 65.1 134 39.6
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 6.3e-09 64.7 130 41.5
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 8.2e-09 64.3 117 42.7
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 8.2e-09 64.3 134 39.6
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 8.2e-09 64.3 126 40.5
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 8.2e-09 64.3 151 35.8
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 8.2e-09 64.3 118 39.8
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 1.1e-08 63.9 44 72.7
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 1.4e-08 63.5 122 41.0
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 1.8e-08 63.2 46 73.9
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 1.8e-08 63.2 129 38.8
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 2.4e-08 62.8 120 39.2
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 2.4e-08 62.8 130 40.0
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 2.4e-08 62.8 50 68.0
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 2.4e-08 62.8 129 39.5
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 3.1e-08 62.4 48 66.7
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.1e-08 62.4 109 45.0
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.1e-08 62.4 136 39.7
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.1e-08 62.4 129 38.0
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 3.1e-08 62.4 49 65.3
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 3.1e-08 62.4 49 65.3
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 4.1e-08 62.0 82 52.4
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 4.1e-08 62.0 46 71.7
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 7.0e-08 61.2 137 40.9
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 7.0e-08 61.2 50 66.0
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 7.0e-08 61.2 63 54.0
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 9.1e-08 60.8 119 39.5
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 9.1e-08 60.8 130 38.5
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 9.1e-08 60.8 119 40.3
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 1.5e-07 60.1 127 38.6
DCAR_020574 Daucus carota HOM05D015198 ORTHO05D002992 1.5e-07 60.1 73 50.7
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 1.5e-07 60.1 115 40.0
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 1.5e-07 60.1 130 38.5
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.5e-07 60.1 119 37.8
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 1.5e-07 60.1 68 51.5
ECA248G1904 Erigeron canadensis HOM05D002974 ORTHO05D002992 2.6e-07 59.3 56 55.4
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.6e-07 59.3 123 37.4
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.6e-07 59.3 129 38.8
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 3.4e-07 58.9 129 38.0
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 4.5e-07 58.5 118 39.8
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 5.9e-07 58.2 131 35.1
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 5.9e-07 58.2 104 39.4
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 5.9e-07 58.2 125 36.8
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 5.9e-07 58.2 63 52.4
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 5.9e-07 58.2 43 72.1
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 7.7e-07 57.8 115 37.4
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 7.7e-07 57.8 126 35.7
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.0e-06 57.4 56 57.1
CDE08G1203 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 1.3e-06 57.0 57 59.6
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 1.3e-06 57.0 45 64.4
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 1.3e-06 57.0 133 36.1
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 1.7e-06 56.6 135 37.0
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 1.7e-06 56.6 136 36.8
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 1.7e-06 56.6 136 36.8
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.7e-06 56.6 50 64.0
CDE09G1110 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 1.7e-06 56.6 43 65.1
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.7e-06 56.6 119 40.3
Manes.08G137100 Manihot esculenta HOM05D011447 ORTHO05D010069 1.7e-06 56.6 92 40.2
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 1.7e-06 56.6 127 40.2
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.2e-06 56.2 123 36.6
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 2.2e-06 56.2 129 38.0
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 2.2e-06 56.2 56 50.0
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 2.2e-06 56.2 114 32.5
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 2.2e-06 56.2 58 55.2
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 2.2e-06 56.2 58 55.2
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.2e-06 56.2 40 72.5
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 2.2e-06 56.2 65 52.3
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 2.9e-06 55.8 51 62.7
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 2.9e-06 55.8 121 37.2
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 2.9e-06 55.8 129 38.0
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 2.9e-06 55.8 46 63.0
Dinv05728 Davidia involucrata HOM05D009218 ORTHO05D010069 3.8e-06 55.5 123 37.4
SGA_v2.0_scaffold69G23150 Striga asiatica HOM05D002974 ORTHO05D002992 3.8e-06 55.5 51 58.8
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 5.0e-06 55.1 135 37.0
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.0e-06 55.1 119 40.3
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 5.0e-06 55.1 48 60.4
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 5.0e-06 55.1 46 58.7
PGR004G0279 Punica granatum HOM05D011447 ORTHO05D010069 5.0e-06 55.1 46 63.0
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 5.0e-06 55.1 52 53.8
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 5.0e-06 55.1 57 57.9
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 6.5e-06 54.7 129 36.4
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.5e-06 54.3 119 39.5
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 8.5e-06 54.3 123 39.8
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 8.5e-06 54.3 124 35.5


User provided reference genes

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