Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033076 Camellia sinensis var. sinensis HOM05D000678 ORTHO05D016859 3.4e-150 535.0 279 100.0
CSS0030849 Camellia sinensis var. sinensis HOM05D000678 ORTHO05D016859 2.5e-145 518.8 279 96.4
Dinv17517 Davidia involucrata HOM05D000678 ORTHO05D001709 8.0e-43 178.3 289 48.1
Actinidia35104 Actinidia chinensis HOM05D000678 ORTHO05D001709 3.0e-42 176.4 275 50.2
Cc04_g06810 Coffea canephora HOM05D000678 ORTHO05D001709 3.7e-40 169.5 288 44.4
Nitab4.5_0001456g0060 Nicotiana tabacum HOM05D000678 ORTHO05D001709 2.0e-38 163.7 293 44.4
CAN.G1129.45 Capsicum annuum HOM05D000678 ORTHO05D001709 1.5e-36 157.5 294 44.9
GSVIVG01008346001 Vitis vinifera HOM05D000678 ORTHO05D001709 1.6e-35 154.1 258 43.4
Peaxi162Scf00683g00336 Petunia axillaris HOM05D000678 ORTHO05D001709 6.1e-35 152.1 295 43.7
PGSC0003DMG400005666 Solanum tuberosum HOM05D000678 ORTHO05D001709 6.1e-35 152.1 296 44.3
Sopen03g037820 Solanum pennellii HOM05D000678 ORTHO05D001709 4.0e-34 149.4 291 43.6
Prupe.5G225400 Prunus persica HOM05D000678 ORTHO05D001709 2.6e-33 146.7 292 40.4
TAR374G0028 Trochodendron aralioides HOM05D000678 ORTHO05D001709 3.4e-33 146.4 267 42.7
MD06G1221200 Malus domestica HOM05D000678 ORTHO05D001709 1.3e-32 144.4 304 40.1
Glyma.09G180100 Glycine max HOM05D000678 ORTHO05D001709 4.9e-32 142.5 288 40.6
Nn3g17962 Nelumbo nucifera HOM05D000678 ORTHO05D001709 4.9e-32 142.5 301 38.9
Phvul.004G153300 Phaseolus vulgaris HOM05D000678 ORTHO05D001709 1.4e-31 141.0 296 39.2
VMungo0464G1982 Vigna mungo HOM05D000678 ORTHO05D001709 5.4e-31 139.0 297 39.7
CiPaw.15G136200 Carya illinoinensis HOM05D000678 ORTHO05D001709 1.2e-30 137.9 292 39.4
Nn4g23966 Nelumbo nucifera HOM05D000678 ORTHO05D001709 1.0e-29 134.8 298 38.6
MD14G1230400 Malus domestica HOM05D000678 ORTHO05D001709 1.7e-29 134.0 310 37.4
Glyma.07G097900 Glycine max HOM05D000678 ORTHO05D001709 3.0e-29 133.3 271 39.5
QL10p026814 Quercus lobata HOM05D000678 ORTHO05D001709 5.0e-29 132.5 282 41.8
Rhsim12G0141200 Rhododendron simsii HOM05D000678 ORTHO05D001709 6.6e-29 132.1 272 45.2
Ca_25468_v3 Cicer arietinum L. HOM05D000678 ORTHO05D001709 2.5e-28 130.2 287 37.6
Lalb_Chr14g0370941 Lupinus albus HOM05D000678 ORTHO05D001709 2.5e-28 130.2 285 42.8
TAR629G1340 Trochodendron aralioides HOM05D000678 ORTHO05D001709 5.6e-28 129.0 311 37.6
TAR622G0820 Trochodendron aralioides HOM05D000678 ORTHO05D001709 1.2e-27 127.9 329 38.6
Nitab4.5_0000150g0070 Nicotiana tabacum HOM05D000678 ORTHO05D001709 2.1e-27 127.1 274 41.2
Manes.05G120200 Manihot esculenta HOM05D000678 ORTHO05D001709 2.8e-27 126.7 297 36.7
Medtr6g082400 Medicago truncatula HOM05D000678 ORTHO05D001709 6.2e-27 125.6 276 40.2
Oeu000990.1 Olea europaea HOM05D000678 ORTHO05D001709 6.2e-27 125.6 296 39.9
Duzib205G2049 Durio zibethinus HOM05D000678 ORTHO05D001709 8.0e-27 125.2 289 39.8
MELO3C017326.2 Cucumis melo HOM05D000678 ORTHO05D001709 4.4e-25 119.4 292 37.0
TAR374G1719 Trochodendron aralioides HOM05D000678 ORTHO05D001709 1.3e-24 117.9 245 40.0
Haze_18745 Corylus avellana HOM05D000678 ORTHO05D001709 3.7e-24 116.3 284 35.9
Cpa.g.sc65.72 Carica papaya HOM05D000678 ORTHO05D001709 4.9e-24 115.9 292 36.6
Peaxi162Scf01127g00002 Petunia axillaris HOM05D000678 ORTHO05D001709 4.9e-24 115.9 270 39.6
Manes.14G107500 Manihot esculenta HOM05D000678 ORTHO05D001709 6.4e-24 115.5 287 35.5
CiPaw.05G243000 Carya illinoinensis HOM05D000678 ORTHO05D001709 2.4e-23 113.6 298 35.2
Aqoxy3G00193 Aquilegia oxysepala HOM05D000678 ORTHO05D001709 4.1e-23 112.8 317 36.3
CsaV3_1G004030 Cucumis sativus L. HOM05D000678 ORTHO05D001709 7.0e-23 112.1 290 37.2
Cfa019725 Carpinus fangiana HOM05D000678 ORTHO05D001709 9.2e-23 111.7 284 35.9
Lj5A153T53 Lonicera japonica HOM05D000678 ORTHO05D001709 9.2e-23 111.7 277 41.2
FvH4_5g16730 Fragaria vesca HOM05D000678 ORTHO05D001709 1.2e-22 111.3 326 36.5
FAN04G3032 Fragaria x ananassa HOM05D000678 ORTHO05D001709 1.2e-22 111.3 308 37.3
FAN08G3466 Fragaria x ananassa HOM05D000678 ORTHO05D001709 1.6e-22 110.9 308 37.3
FAN13G2912 Fragaria x ananassa HOM05D000678 ORTHO05D001709 1.6e-22 110.9 312 36.9
Solyc03g118870.4 Solanum lycopersicum HOM05D000678 ORTHO05D001709 2.0e-22 110.5 243 41.6
Cpa.g.sc3.457 Carica papaya HOM05D000678 ORTHO05D001709 2.7e-22 110.2 301 33.9
Duzib268G0701 Durio zibethinus HOM05D000678 ORTHO05D001709 3.5e-22 109.8 292 38.4
RcHm_v2.0_Chr7g0179361 Rosa chinensis HOM05D000678 ORTHO05D001709 1.3e-21 107.8 310 34.2
FAN18G0284 Fragaria x ananassa HOM05D000678 ORTHO05D001709 2.3e-21 107.1 325 36.0
Manes.06G064500 Manihot esculenta HOM05D000678 ORTHO05D001709 2.3e-21 107.1 294 37.1
Nitab4.5_0004703g0050 Nicotiana tabacum HOM05D000678 ORTHO05D001709 6.6e-21 105.5 253 37.9
ClCG06G014590 Citrullus lanatus HOM05D000678 ORTHO05D001709 1.1e-20 104.8 294 34.7
Sabra10G0089900 Salix brachista HOM05D000678 ORTHO05D001709 1.1e-20 104.8 322 34.2
Thecc.03G043200 Theobroma cacao HOM05D000678 ORTHO05D001709 1.1e-20 104.8 298 35.9
Duzib068G1423 Durio zibethinus HOM05D000678 ORTHO05D001709 1.9e-20 104.0 283 38.5
Potri.012G053500 Populus trichocarpa HOM05D000678 ORTHO05D001709 2.5e-20 103.6 283 37.1
Cfa015832 Carpinus fangiana HOM05D000678 ORTHO05D001709 3.3e-20 103.2 308 32.8
TWI75G0363 Tripterygium wilfordii HOM05D000678 ORTHO05D001709 3.3e-20 103.2 300 35.0
TWI60G1409 Tripterygium wilfordii HOM05D000678 ORTHO05D001709 4.3e-20 102.8 303 36.3
Ciclev10014450m.g Citrus clementina HOM05D000678 ORTHO05D001709 7.3e-20 102.1 314 36.3
Potri.010G119500 Populus trichocarpa HOM05D000678 ORTHO05D001709 7.3e-20 102.1 312 37.2
COL.COLO4_38516 Corchorus olitorius HOM05D000678 ORTHO05D001709 2.1e-19 100.5 295 38.6
PSO478G2516 Papaver somniferum HOM05D000678 ORTHO05D001709 2.1e-19 100.5 303 34.7
MBI09_g25149_MAGBIO Magnolia biondii HOM05D000678 ORTHO05D001709 8.1e-19 98.6 305 37.7
MD16G1036800 Malus domestica HOM05D000678 ORTHO05D001709 1.8e-18 97.4 308 36.4
Sc11g0003800 Simmondsia chinensis HOM05D000678 ORTHO05D001709 2.3e-18 97.1 304 31.6
CANSAT80G2524 Cannabis sativa HOM05D000678 ORTHO05D001709 5.2e-18 95.9 312 33.7
Sed0002355 Sechium edule HOM05D000678 ORTHO05D001709 5.2e-18 95.9 317 31.9
CANSAT80G2533 Cannabis sativa HOM05D000678 ORTHO05D001709 1.5e-17 94.4 335 30.7
ECA240G4724 Erigeron canadensis HOM05D000678 ORTHO05D001709 1.5e-17 94.4 290 32.8
Lalb_Chr05g0221971 Lupinus albus HOM05D000678 ORTHO05D001709 1.5e-17 94.4 270 34.4
PSO017G6534 Papaver somniferum HOM05D000678 ORTHO05D001709 1.5e-17 94.4 302 33.8
Sabra12G0037300 Salix brachista HOM05D000678 ORTHO05D001709 1.5e-17 94.4 284 34.9
PGR083G1471 Punica granatum HOM05D000678 ORTHO05D001709 2.0e-17 94.0 288 34.7
Oeu017515.1 Olea europaea HOM05D000678 ORTHO05D001709 2.6e-17 93.6 295 35.9
Duzib251G0315 Durio zibethinus HOM05D000678 ORTHO05D001709 4.4e-17 92.8 293 37.5
Lsat_1_v5_gn_8_142181 Lactuca sativa HOM05D000678 ORTHO05D001709 4.4e-17 92.8 273 34.8
Solyc04g007460.4 Solanum lycopersicum HOM05D000678 ORTHO05D001709 5.8e-17 92.4 293 32.4
Medtr8g106245 Medicago truncatula HOM05D000678 ORTHO05D016859 7.5e-17 92.0 270 31.9
Prupe.1G317300 Prunus persica HOM05D000678 ORTHO05D001709 7.5e-17 92.0 308 34.4
Dinv16142 Davidia involucrata HOM05D000678 ORTHO05D001709 1.3e-16 91.3 292 34.6
Nitab4.5_0002112g0180 Nicotiana tabacum HOM05D000678 ORTHO05D001709 1.7e-16 90.9 284 32.7
Gorai.001G068000 Gossypium raimondii HOM05D000678 ORTHO05D001709 2.2e-16 90.5 304 35.5
Sed0011837 Sechium edule HOM05D000678 ORTHO05D001709 3.7e-16 89.7 299 33.4
MSTRG.2214 Avicennia marina HOM05D000678 ORTHO05D001709 8.3e-16 88.6 281 31.3
Sopen04g002530 Solanum pennellii HOM05D000678 ORTHO05D001709 1.4e-15 87.8 285 32.6
arahy.Tifrunner.gnm1.ann1.K9IHFT Arachis hypogaea HOM05D000678 ORTHO05D001709 3.2e-15 86.7 299 30.8
MD13G1034900 Malus domestica HOM05D000678 ORTHO05D001709 5.4e-15 85.9 351 31.9
Potri.008G124700 Populus trichocarpa HOM05D000678 ORTHO05D001709 5.4e-15 85.9 291 32.0
vmacro16431 Vaccinium macrocarpon HOM05D000678 ORTHO05D001709 1.6e-14 84.3 147 43.5
QL01p010688 Quercus lobata HOM05D000678 ORTHO05D001709 4.6e-14 82.8 345 30.1
QL01p010763 Quercus lobata HOM05D000678 ORTHO05D001709 4.6e-14 82.8 345 30.1
RcHm_v2.0_Chr4g0434361 Rosa chinensis HOM05D000678 ORTHO05D001709 4.6e-14 82.8 327 33.6
TPR.G7289 Trifolium pratense HOM05D021485 ORTHO05D016859 4.6e-14 82.8 205 37.6
TPR.G33053 Trifolium pratense HOM05D021485 ORTHO05D016859 6.0e-14 82.4 223 35.9
CSS0005059 Camellia sinensis var. sinensis HOM05D000678 ORTHO05D001709 1.7e-13 80.9 344 30.5
Dinv31588 Davidia involucrata HOM05D000678 ORTHO05D001709 1.7e-13 80.9 211 37.4
Nitab4.5_0000694g0090 Nicotiana tabacum HOM05D000678 ORTHO05D001709 1.7e-13 80.9 287 29.3
VMungo0720G1183 Vigna mungo HOM05D000678 ORTHO05D001709 1.7e-13 80.9 293 34.8
GSVIVG01030974001 Vitis vinifera HOM05D000678 ORTHO05D001709 2.3e-13 80.5 290 32.4
PGSC0003DMG400005971 Solanum tuberosum HOM05D000678 ORTHO05D001709 5.1e-13 79.3 284 30.6
SGA_v2.0_scaffold38G15009 Striga asiatica HOM05D000678 ORTHO05D001709 5.1e-13 79.3 286 30.1
CAN.G610.21 Capsicum annuum HOM05D000678 ORTHO05D001709 1.1e-12 78.2 292 31.8
Solyc05g008830.3 Solanum lycopersicum HOM05D000678 ORTHO05D001709 1.1e-12 78.2 301 30.9
CDE08G1599 Ceratophyllum demersum HOM05D000678 ORTHO05D001709 1.5e-12 77.8 295 30.5
Dinv34792 Davidia involucrata HOM05D000678 ORTHO05D001709 1.5e-12 77.8 270 32.2
Sopen05g004590 Solanum pennellii HOM05D000678 ORTHO05D001709 2.5e-12 77.0 301 30.6
Gohir.D07G064400 Gossypium hirsutum HOM05D000678 ORTHO05D001709 4.3e-12 76.3 302 33.1
FAN12G2310 Fragaria x ananassa HOM05D000678 ORTHO05D001709 5.6e-12 75.9 319 33.5
Sabra08G0094200 Salix brachista HOM05D000678 ORTHO05D001709 5.6e-12 75.9 313 31.3
CDE02G3047 Ceratophyllum demersum HOM05D000678 ORTHO05D001709 7.3e-12 75.5 294 31.0
Lalb_Chr21g0308711 Lupinus albus HOM05D000678 ORTHO05D001709 7.3e-12 75.5 315 32.1
FAN12G3926 Fragaria x ananassa HOM05D000678 ORTHO05D001709 9.5e-12 75.1 320 33.1
Potri.017G119100 Populus trichocarpa HOM05D000678 ORTHO05D001709 9.5e-12 75.1 289 30.8
EL10Ac5g11486 Beta vulgaris HOM05D000678 ORTHO05D001709 1.2e-11 74.7 275 32.4
FAN17G2574 Fragaria x ananassa HOM05D000678 ORTHO05D001709 1.2e-11 74.7 313 32.9
Glyma.20G121100 Glycine max HOM05D000678 ORTHO05D001709 1.2e-11 74.7 308 31.8
Lj5g0002524 Lotus japonicus HOM05D000678 ORTHO05D001709 1.2e-11 74.7 319 29.5
Gohir.A07G059700 Gossypium hirsutum HOM05D000678 ORTHO05D001709 1.6e-11 74.3 303 32.7
arahy.Tifrunner.gnm1.ann1.T858PM Arachis hypogaea HOM05D000678 ORTHO05D001709 2.1e-11 73.9 230 31.3
Cc11_g09610 Coffea canephora HOM05D000678 ORTHO05D001709 2.8e-11 73.6 290 32.1
CSS0026543 Camellia sinensis var. sinensis HOM05D000678 ORTHO05D001709 3.6e-11 73.2 233 31.3
AUR62033782 Chenopodium quinoa HOM05D000678 ORTHO05D001709 3.6e-11 73.2 271 31.0
FvH4_4g26650 Fragaria vesca HOM05D000678 ORTHO05D001709 4.7e-11 72.8 322 32.6
Hma1.2p1_3314F.1_g335180 Hydrangea macrophylla HOM05D000678 ORTHO05D001709 1.1e-10 71.6 257 30.4
Lj2g0019763 Lotus japonicus HOM05D000678 ORTHO05D001709 1.1e-10 71.6 292 32.9
AUR62029922 Chenopodium quinoa HOM05D000678 ORTHO05D001709 1.4e-10 71.2 272 29.8
Hund25030 Selenicereus undatus HOM05D000678 ORTHO05D001709 1.4e-10 71.2 335 25.7
arahy.Tifrunner.gnm1.ann1.RP799M Arachis hypogaea HOM05D000678 ORTHO05D001709 1.8e-10 70.9 230 30.9
Sc04g0003330 Simmondsia chinensis HOM05D000678 ORTHO05D001709 1.8e-10 70.9 286 34.3
Haze_00659 Corylus avellana HOM05D000678 ORTHO05D001709 2.4e-10 70.5 289 28.0
QL02p050274 Quercus lobata HOM05D000678 ORTHO05D001709 3.1e-10 70.1 291 30.6
FAN22G2322 Fragaria x ananassa HOM05D000678 ORTHO05D001709 4.0e-10 69.7 323 32.5
SHI16241 Sapria himalayana HOM05D000678 ORTHO05D001709 5.2e-10 69.3 288 30.9
QL04p012112 Quercus lobata HOM05D000678 ORTHO05D001709 6.8e-10 68.9 291 30.2
Ciclev10011483m.g Citrus clementina HOM05D000678 ORTHO05D001709 8.9e-10 68.6 306 32.0
Ah.11g045180 Amaranthus hybridus HOM05D000678 ORTHO05D001709 1.2e-09 68.2 270 31.1
Phvul.007G032500 Phaseolus vulgaris HOM05D000678 ORTHO05D001709 1.2e-09 68.2 317 32.5
Atru.chr9.920 Acer truncatum HOM05D000678 ORTHO05D001709 2.6e-09 67.0 276 33.3
Glyma.10G270200 Glycine max HOM05D000678 ORTHO05D001709 2.6e-09 67.0 295 31.2
DCAR_026752 Daucus carota HOM05D000678 ORTHO05D001709 4.4e-09 66.2 270 30.4
MSTRG.864 Avicennia marina HOM05D000678 ORTHO05D001709 9.9e-09 65.1 285 30.2
BcaB07g30754 Brassica carinata HOM05D000678 ORTHO05D001709 9.9e-09 65.1 236 32.2
FAN07G1955 Fragaria x ananassa HOM05D000678 ORTHO05D001709 1.3e-08 64.7 285 33.0
Sed0009379 Sechium edule HOM05D000678 ORTHO05D001709 1.3e-08 64.7 282 28.4
Medtr1g109470 Medicago truncatula HOM05D000678 ORTHO05D001709 1.7e-08 64.3 325 28.9
Sabra17G0098400 Salix brachista HOM05D000678 ORTHO05D001709 2.9e-08 63.5 294 27.6
unitig_0.g2340 Utricularia gibba HOM05D000678 ORTHO05D001709 8.4e-08 62.0 292 29.8
vmacro10606 Vaccinium macrocarpon HOM05D000678 ORTHO05D001709 1.9e-07 60.8 200 31.0
arahy.Tifrunner.gnm1.ann1.GYF1N1 Arachis hypogaea HOM05D000678 ORTHO05D001709 2.4e-07 60.5 276 30.1
HanXRQChr17g0567211 Helianthus annuus HOM05D000678 ORTHO05D001709 3.2e-07 60.1 270 29.3
Rhsim10G0072800 Rhododendron simsii HOM05D000678 ORTHO05D001709 3.2e-07 60.1 281 28.8
Lalb_Chr17g0338801 Lupinus albus HOM05D000678 ORTHO05D001709 9.2e-07 58.5 195 31.8
Oeu007192.1 Olea europaea HOM05D000678 ORTHO05D001709 1.2e-06 58.2 240 27.9
Gohir.A11G166300 Gossypium hirsutum HOM05D000678 ORTHO05D001709 1.6e-06 57.8 289 29.1
COL.COLO4_32124 Corchorus olitorius HOM05D000678 ORTHO05D001709 2.7e-06 57.0 252 34.5
Gohir.D11G172300 Gossypium hirsutum HOM05D000678 ORTHO05D001709 4.6e-06 56.2 291 29.6


User provided reference genes

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