Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033068 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 3.5e-39 164.5 81 100.0
CSS0005299 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 2.2e-25 118.6 87 72.4
CSS0015599 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 2.2e-25 118.6 87 75.9
Actinidia05960 Actinidia chinensis HOM05D004424 ORTHO05D005476 2.3e-19 98.6 49 95.9
CSS0000987 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 2.3e-19 98.6 49 95.9
CSS0006863 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 2.3e-19 98.6 49 95.9
CSS0021502 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 2.3e-19 98.6 49 95.9
CSS0022745 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 2.3e-19 98.6 49 95.9
Lj7A603T68 Lonicera japonica HOM05D004424 ORTHO05D005476 2.3e-19 98.6 49 95.9
Actinidia36142 Actinidia chinensis HOM05D004424 ORTHO05D005476 5.2e-19 97.4 49 93.9
DCAR_011275 Daucus carota HOM05D004424 ORTHO05D005476 5.2e-19 97.4 49 93.9
Dinv33406 Davidia involucrata HOM05D004424 ORTHO05D005476 5.2e-19 97.4 49 93.9
Lsat_1_v5_gn_4_184601 Lactuca sativa HOM05D004424 ORTHO05D005476 5.2e-19 97.4 49 93.9
ECA232G4437 Erigeron canadensis HOM05D004424 ORTHO05D005476 1.2e-18 96.3 49 91.8
Hma1.2p1_0818F.1_g223410 Hydrangea macrophylla HOM05D004424 ORTHO05D005476 1.2e-18 96.3 49 91.8
SGA_v2.0_scaffold18G08249 Striga asiatica HOM05D004424 ORTHO05D005476 1.5e-18 95.9 49 93.9
MSTRG.24051 Avicennia marina HOM05D004424 ORTHO05D005476 2.0e-18 95.5 49 91.8
Lju41A44T88 Lonicera japonica HOM05D004424 ORTHO05D005476 2.0e-18 95.5 49 91.8
RhsimUnG0088000 Rhododendron simsii HOM05D004424 ORTHO05D005476 2.0e-18 95.5 49 89.8
Nitab4.5_0000040g0610 Nicotiana tabacum HOM05D004424 ORTHO05D005476 4.4e-18 94.4 49 89.8
Nitab4.5_0004496g0010 Nicotiana tabacum HOM05D004424 ORTHO05D005476 4.4e-18 94.4 49 89.8
Cfa007312 Carpinus fangiana HOM05D004424 ORTHO05D005476 5.8e-18 94.0 49 91.8
Cc07_g00150 Coffea canephora HOM05D004424 ORTHO05D005476 5.8e-18 94.0 49 89.8
Haze_14780 Corylus avellana HOM05D004424 ORTHO05D005476 5.8e-18 94.0 49 91.8
Oeu054644.1 Olea europaea HOM05D004424 ORTHO05D005476 5.8e-18 94.0 49 87.8
CANSAT64G1206 Cannabis sativa HOM05D004424 ORTHO05D005476 7.5e-18 93.6 49 91.8
Peaxi162Scf00080g01518 Petunia axillaris HOM05D004424 ORTHO05D005476 9.8e-18 93.2 49 87.8
GSVIVG01003989001 Vitis vinifera HOM05D004424 ORTHO05D005476 9.8e-18 93.2 49 89.8
HanXRQChr09g0255531 Helianthus annuus HOM05D004424 ORTHO05D005476 1.3e-17 92.8 49 89.8
RcHm_v2.0_Chr2g0173621 Rosa chinensis HOM05D004424 ORTHO05D005476 1.3e-17 92.8 49 89.8
CiPaw.03G047600 Carya illinoinensis HOM05D004424 ORTHO05D005476 1.7e-17 92.4 49 89.8
QL02p073533 Quercus lobata HOM05D004424 ORTHO05D005476 1.7e-17 92.4 49 89.8
Migut.K01420 Erythranthe guttata HOM05D004424 ORTHO05D005476 2.2e-17 92.0 49 89.8
Prupe.3G296200 Prunus persica HOM05D004424 ORTHO05D005476 2.2e-17 92.0 49 89.8
Aqoxy3G01375 Aquilegia oxysepala HOM05D004424 ORTHO05D005476 2.9e-17 91.7 49 87.8
Glyma.05G114400 Glycine max HOM05D004424 ORTHO05D005476 2.9e-17 91.7 49 89.8
Glyma.19G053500 Glycine max HOM05D004424 ORTHO05D005476 2.9e-17 91.7 49 89.8
Lj2g0008128 Lotus japonicus HOM05D004424 ORTHO05D005476 2.9e-17 91.7 49 89.8
VMungo0464G1386 Vigna mungo HOM05D004424 ORTHO05D005476 2.9e-17 91.7 49 89.8
Atru.chr6.2455 Acer truncatum HOM05D004424 ORTHO05D005476 3.7e-17 91.3 49 89.8
Cpa.g.sc1921.1 Carica papaya HOM05D004424 ORTHO05D005476 3.7e-17 91.3 49 89.8
Ca_04390_v3 Cicer arietinum L. HOM05D004424 ORTHO05D005476 3.7e-17 91.3 56 80.4
Gohir.A09G031100 Gossypium hirsutum HOM05D004424 ORTHO05D005476 3.7e-17 91.3 49 87.8
Gohir.D09G031300 Gossypium hirsutum HOM05D004424 ORTHO05D005476 3.7e-17 91.3 49 87.8
Gorai.006G036200 Gossypium raimondii HOM05D004424 ORTHO05D005476 3.7e-17 91.3 49 87.8
Manes.15G153800 Manihot esculenta HOM05D004424 ORTHO05D005476 3.7e-17 91.3 49 87.8
Potri.017G070900 Populus trichocarpa HOM05D004424 ORTHO05D005476 3.7e-17 91.3 49 87.8
CAN.G1057.16 Capsicum annuum HOM05D004424 ORTHO05D005476 4.9e-17 90.9 49 85.7
FvH4_6g52110 Fragaria vesca HOM05D004424 ORTHO05D005476 4.9e-17 90.9 49 87.8
FAN05G4460 Fragaria x ananassa HOM05D004424 ORTHO05D005476 4.9e-17 90.9 49 87.8
FAN14G4625 Fragaria x ananassa HOM05D004424 ORTHO05D005476 4.9e-17 90.9 49 87.8
MD17G1020700 Malus domestica HOM05D004424 ORTHO05D005476 4.9e-17 90.9 49 87.8
Phvul.004G059500 Phaseolus vulgaris HOM05D004424 ORTHO05D005476 4.9e-17 90.9 49 87.8
Solyc02g067930.3 Solanum lycopersicum HOM05D004424 ORTHO05D005476 4.9e-17 90.9 49 85.7
Sopen02g017050 Solanum pennellii HOM05D004424 ORTHO05D005476 4.9e-17 90.9 49 85.7
PGSC0003DMG400006965 Solanum tuberosum HOM05D004424 ORTHO05D005476 4.9e-17 90.9 49 85.7
Eucgr.J02265 Eucalyptus grandis HOM05D004424 ORTHO05D005476 6.4e-17 90.5 49 87.8
Medtr6g021915 Medicago truncatula HOM05D004424 ORTHO05D005476 6.4e-17 90.5 49 87.8
TPR.G21634 Trifolium pratense HOM05D004424 ORTHO05D005476 6.4e-17 90.5 49 87.8
COL.COLO4_29204 Corchorus olitorius HOM05D004424 ORTHO05D005476 8.3e-17 90.1 49 85.7
PGR083G2343 Punica granatum HOM05D004424 ORTHO05D005476 8.3e-17 90.1 49 87.8
Thecc.04G022600 Theobroma cacao HOM05D004424 ORTHO05D005476 8.3e-17 90.1 49 85.7
CiPaw.04G031300 Carya illinoinensis HOM05D004424 ORTHO05D005476 1.1e-16 89.7 49 87.8
arahy.Tifrunner.gnm1.ann1.75451B Arachis hypogaea HOM05D004424 ORTHO05D005476 1.4e-16 89.4 49 85.7
Ciclev10015567m.g Citrus clementina HOM05D004424 ORTHO05D005476 1.4e-16 89.4 49 87.8
THA.LOC104825312 Tarenaya hassleriana HOM05D004424 ORTHO05D005476 1.4e-16 89.4 49 85.7
TWI56G0533 Tripterygium wilfordii HOM05D004424 ORTHO05D005476 1.9e-16 89.0 49 85.7
Lalb_Chr24g0403451 Lupinus albus HOM05D004424 ORTHO05D005476 2.4e-16 88.6 49 85.7
TWI36G0116 Tripterygium wilfordii HOM05D004424 ORTHO05D005476 2.4e-16 88.6 49 85.7
DCAR_021744 Daucus carota HOM05D004424 ORTHO05D005476 3.2e-16 88.2 49 79.6
PSO063G2103 Papaver somniferum HOM05D004424 ORTHO05D005476 3.2e-16 88.2 49 81.6
PSO067G0009 Papaver somniferum HOM05D004424 ORTHO05D005476 3.2e-16 88.2 49 81.6
Sed0023807 Sechium edule HOM05D004424 ORTHO05D005476 3.2e-16 88.2 49 85.7
TAR629G0173 Trochodendron aralioides HOM05D004424 ORTHO05D005476 3.2e-16 88.2 49 83.7
Zm00001eb139850 Zea mays HOM05D004424 ORTHO05D005476 3.2e-16 88.2 49 83.7
Aqoxy3G01300 Aquilegia oxysepala HOM05D004424 ORTHO05D005476 4.1e-16 87.8 49 83.7
FAN02G2704 Fragaria x ananassa HOM05D004424 ORTHO05D005476 4.1e-16 87.8 49 85.7
FAN09G1365 Fragaria x ananassa HOM05D004424 ORTHO05D005476 4.1e-16 87.8 49 85.7
Gorai.012G066600 Gossypium raimondii HOM05D004424 ORTHO05D005476 4.1e-16 87.8 51 82.4
MD09G1020100 Malus domestica HOM05D004424 ORTHO05D005476 4.1e-16 87.8 49 85.7
Duzib264G0829 Durio zibethinus HOM05D004424 ORTHO05D005476 5.4e-16 87.4 49 81.6
Atru.chr2.1101 Acer truncatum HOM05D004424 ORTHO05D005476 7.0e-16 87.0 49 83.7
ClCG09G019460 Citrullus lanatus HOM05D004424 ORTHO05D005476 7.0e-16 87.0 49 85.7
MELO3C021604.2 Cucumis melo HOM05D004424 ORTHO05D005476 7.0e-16 87.0 49 85.7
CsaV3_5G026900 Cucumis sativus L. HOM05D004424 ORTHO05D005476 7.0e-16 87.0 49 85.7
Gohir.D04G060000 Gossypium hirsutum HOM05D004424 ORTHO05D005476 9.2e-16 86.7 49 83.7
Os01g0971600 Oryza sativa ssp. japonica HOM05D004424 ORTHO05D005476 9.2e-16 86.7 49 83.7
MD17G1020500 Malus domestica HOM05D004424 ORTHO05D005476 1.2e-15 86.3 49 81.6
THA.LOC104805357 Tarenaya hassleriana HOM05D004424 ORTHO05D005476 1.6e-15 85.9 49 81.6
Ca_05240_v3 Cicer arietinum L. HOM05D004424 ORTHO05D005476 2.0e-15 85.5 49 81.6
Gohir.A05G353300 Gossypium hirsutum HOM05D004424 ORTHO05D005476 2.0e-15 85.5 49 81.6
Pp3c15_11110 Physcomitrium patens HOM05D004424 ORTHO05D005476 2.0e-15 85.5 57 75.4
HPP92_021439 Vanilla planifolia HOM05D004424 ORTHO05D005476 2.0e-15 85.5 49 79.6
AL7G49190 Arabidopsis lyrata HOM05D004424 ORTHO05D005476 2.7e-15 85.1 49 81.6
Oeu050453.1 Olea europaea HOM05D004424 ORTHO05D005476 2.7e-15 85.1 46 84.8
Psat3g172960 Pisum sativum HOM05D004424 ORTHO05D005476 2.7e-15 85.1 49 85.7
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 3.5e-15 84.7 49 81.6
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 3.5e-15 84.7 49 81.6
BolC4t26343H Brassica oleracea HOM05D004424 ORTHO05D005476 3.5e-15 84.7 49 81.6
ATR0824G013 Amborella trichopoda HOM05D004424 ORTHO05D005476 4.6e-15 84.3 49 79.6
Glyma.19G079400 Glycine max HOM05D004424 ORTHO05D005476 4.6e-15 84.3 49 77.6
Phvul.008G160800 Phaseolus vulgaris HOM05D004424 ORTHO05D005476 4.6e-15 84.3 49 79.6
Carub.0007s3488 Capsella rubella HOM05D004424 ORTHO05D005476 6.0e-15 84.0 49 79.6
PSO578G0012 Papaver somniferum HOM05D004424 ORTHO05D005476 6.0e-15 84.0 49 79.6
BcaB02g07939 Brassica carinata HOM05D004424 ORTHO05D005476 7.8e-15 83.6 49 79.6
BcaC08g44470 Brassica carinata HOM05D004424 ORTHO05D005476 7.8e-15 83.6 49 79.6
A07p20340 Brassica napus HOM05D004424 ORTHO05D005476 7.8e-15 83.6 49 79.6
BolC6t37118H Brassica oleracea HOM05D004424 ORTHO05D005476 7.8e-15 83.6 49 79.6
BraA07t29735Z Brassica rapa HOM05D004424 ORTHO05D005476 7.8e-15 83.6 49 79.6
SMO244G0041 Selaginella moellendorffii HOM05D004424 ORTHO05D005476 7.8e-15 83.6 49 79.6
HPP92_027100 Vanilla planifolia HOM05D004424 ORTHO05D005476 7.8e-15 83.6 49 77.6
TPR.G1131 Trifolium pratense HOM05D004424 ORTHO05D005476 1.0e-14 83.2 49 79.6
CARHR261350 Cardamine hirsuta HOM05D004424 ORTHO05D005476 1.3e-14 82.8 49 79.6
Lalb_Chr22g0360631 Lupinus albus HOM05D004424 ORTHO05D005476 1.3e-14 82.8 49 81.6
Medtr7g032630 Medicago truncatula HOM05D004424 ORTHO05D005476 1.3e-14 82.8 49 81.6
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 1.7e-14 82.4 49 77.6
Mapoly0218s0007 Marchantia polymorpha HOM05D004424 ORTHO05D005476 1.7e-14 82.4 56 69.6
AT5G40610 Arabidopsis thaliana HOM05D004424 ORTHO05D005476 2.3e-14 82.0 49 79.6
arahy.Tifrunner.gnm1.ann1.E7CAJ8 Arachis hypogaea HOM05D004424 ORTHO05D005476 2.3e-14 82.0 46 82.6
Lj1g0018666 Lotus japonicus HOM05D004424 ORTHO05D005476 2.3e-14 82.0 49 81.6
PSO478G3400 Papaver somniferum HOM05D004424 ORTHO05D005476 2.3e-14 82.0 49 77.6
Thhalv10027824m.g Eutrema salsugineum HOM05D004424 ORTHO05D005476 3.0e-14 81.6 49 77.6
AagrBONN_evm.TU.Sc2ySwM_117.680 Anthoceros agrestis HOM05D004424 ORTHO05D005476 5.0e-14 80.9 49 77.6
Aa31LG9G1010 Aethionema arabicum HOM05D004424 ORTHO05D005476 6.6e-14 80.5 49 75.5
Sc16g0003770 Simmondsia chinensis HOM05D004424 ORTHO05D005476 6.6e-14 80.5 46 82.6
Sp7g01260 Schrenkiella parvula HOM05D004424 ORTHO05D005476 8.6e-14 80.1 49 77.6
Hund06842 Selenicereus undatus HOM05D004424 ORTHO05D005476 1.1e-13 79.7 49 77.6
Ah.04g162770 Amaranthus hybridus HOM05D004424 ORTHO05D005476 3.3e-13 78.2 49 75.5
EL10Ac4g08826 Beta vulgaris HOM05D004424 ORTHO05D005476 3.3e-13 78.2 49 73.5
PSO017G0380 Papaver somniferum HOM05D004424 ORTHO05D005476 5.6e-13 77.4 49 73.5
PSO017G0629 Papaver somniferum HOM05D004424 ORTHO05D005476 5.6e-13 77.4 49 73.5
PSO017G1760 Papaver somniferum HOM05D004424 ORTHO05D005476 5.6e-13 77.4 49 73.5
AUR62041297 Chenopodium quinoa HOM05D004424 ORTHO05D005476 9.5e-13 76.6 49 73.5
RhsimUnG0005500 Rhododendron simsii HOM05D004424 ORTHO05D005476 1.2e-12 76.3 49 75.5
C06p19220 Brassica napus HOM05D004424 ORTHO05D005476 2.0e-10 68.9 73 52.1
PRCOL_00004238 Prasinoderma coloniale HOM05D004424 ORTHO05D005476 1.9e-08 62.4 39 74.4
BcaB06g27537 Brassica carinata HOM05D004424 ORTHO05D005476 2.4e-08 62.0 49 65.3
FAN09G1353 Fragaria x ananassa HOM05D004424 ORTHO05D005476 2.1e-07 58.9 30 90.0
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 4.6e-07 57.8 53 47.2
Haze_27221 Corylus avellana HOM05D004424 ORTHO05D005476 6.0e-07 57.4 32 75.0
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.3e-06 56.2 53 45.3
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.0e-06 55.1 39 61.5
Psat1g081600 Pisum sativum HOM05D004424 ORTHO05D005476 3.0e-06 55.1 30 86.7
arahy.Tifrunner.gnm1.ann1.SWZ6KM Arachis hypogaea HOM05D004424 ORTHO05D005476 3.9e-06 54.7 46 60.9
vmacro05893 Vaccinium macrocarpon HOM05D004424 ORTHO05D005476 8.6e-06 53.5 49 59.2


User provided reference genes

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