Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 6.1e-61 237.3 117 100.0
CSS0049190 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.2e-46 188.0 117 83.8
CSS0034676 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.2e-32 143.3 122 67.2
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 2.4e-17 92.4 77 64.9
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 7.0e-17 90.9 76 59.2
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 9.2e-17 90.5 77 61.0
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 1.6e-16 89.7 76 63.2
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 2.7e-16 89.0 75 64.0
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.0e-15 87.0 76 57.9
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 1.3e-15 86.7 76 57.9
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.3e-15 86.7 76 57.9
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 3.9e-15 85.1 76 61.8
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 5.1e-15 84.7 76 60.5
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 5.1e-15 84.7 76 56.6
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 6.6e-15 84.3 76 56.6
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 6.6e-15 84.3 75 58.7
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 8.6e-15 84.0 76 57.9
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 1.1e-14 83.6 76 59.2
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 1.5e-14 83.2 76 56.6
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 1.9e-14 82.8 76 55.3
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 3.3e-14 82.0 86 54.7
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 9.5e-14 80.5 76 56.6
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 9.5e-14 80.5 76 56.6
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 1.6e-13 79.7 77 51.9
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 2.1e-13 79.3 77 53.2
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 2.8e-13 79.0 76 56.6
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 2.8e-13 79.0 76 56.6
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 4.7e-13 78.2 76 55.3
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 8.1e-13 77.4 76 56.6
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 3.1e-12 75.5 79 50.6
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 3.1e-12 75.5 76 51.3
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 3.1e-12 75.5 75 46.7
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 4.0e-12 75.1 78 48.7
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 8.9e-12 73.9 75 53.3
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 1.2e-11 73.6 77 54.5
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 1.5e-11 73.2 76 51.3
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 2.0e-11 72.8 77 50.6
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 2.6e-11 72.4 76 48.7
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 3.4e-11 72.0 76 52.6
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 3.4e-11 72.0 76 51.3
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 5.8e-11 71.2 75 45.3
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 5.8e-11 71.2 76 50.0
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 5.8e-11 71.2 75 49.3
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 7.5e-11 70.9 77 57.1
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 7.5e-11 70.9 77 46.8
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 1.3e-10 70.1 76 50.0
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 1.3e-10 70.1 75 48.0
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 1.3e-10 70.1 83 47.0
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 2.2e-10 69.3 75 53.3
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 3.7e-10 68.6 75 52.0
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 3.7e-10 68.6 75 52.0
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 3.7e-10 68.6 75 52.0
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 4.9e-10 68.2 76 46.1
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 4.9e-10 68.2 75 46.7
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 4.9e-10 68.2 77 50.6
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 6.4e-10 67.8 76 48.7
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 6.4e-10 67.8 75 48.0
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 6.4e-10 67.8 75 48.0
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 6.4e-10 67.8 98 41.8
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 6.4e-10 67.8 73 49.3
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 1.1e-09 67.0 77 46.8
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 1.1e-09 67.0 76 48.7
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 1.4e-09 66.6 77 48.1
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 1.4e-09 66.6 75 42.7
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 1.4e-09 66.6 77 48.1
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 1.4e-09 66.6 75 48.0
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 2.4e-09 65.9 75 50.7
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 5.4e-09 64.7 77 46.8
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 7.1e-09 64.3 77 46.8
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 7.1e-09 64.3 76 47.4
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 7.1e-09 64.3 72 51.4
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 9.2e-09 63.9 77 46.8
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 1.6e-08 63.2 75 46.7
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 3.5e-08 62.0 77 45.5
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 3.5e-08 62.0 78 44.9
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 7.8e-08 60.8 116 40.5
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 7.8e-08 60.8 116 40.5
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 3.0e-07 58.9 76 40.8
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 3.0e-07 58.9 76 40.8
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 3.9e-07 58.5 75 41.3
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 1.9e-06 56.2 76 39.5
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 1.9e-06 56.2 76 39.5
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 1.9e-06 56.2 76 39.5
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 2.5e-06 55.8 76 42.1


User provided reference genes

Program Settings