Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032989 Camellia sinensis var. sinensis HOM05D007213 ORTHO05D009165 0.0e+00 1256.9 871 100.0
Actinidia15534 Actinidia chinensis HOM05D007213 ORTHO05D009165 2.8e-227 792.7 872 68.6
Dinv05524 Davidia involucrata HOM05D007213 ORTHO05D009165 3.0e-221 772.7 892 65.4
Actinidia17102 Actinidia chinensis HOM05D007213 ORTHO05D009165 7.4e-220 768.1 890 62.8
Dinv35497 Davidia involucrata HOM05D007213 ORTHO05D009165 1.0e-216 757.7 863 60.5
Rhsim06G0000200 Rhododendron simsii HOM05D007213 ORTHO05D009165 1.0e-216 757.7 866 61.0
vmacro21731 Vaccinium macrocarpon HOM05D007213 ORTHO05D009165 1.9e-212 743.4 865 59.8
GSVIVG01013472001 Vitis vinifera HOM05D007213 ORTHO05D009165 2.5e-183 646.7 794 53.3
Cfa014177 Carpinus fangiana HOM05D007213 ORTHO05D009165 5.4e-178 629.0 882 51.0
Haze_22902 Corylus avellana HOM05D007213 ORTHO05D009165 2.6e-172 610.1 873 54.0
PGSC0003DMG400025663 Solanum tuberosum HOM05D007213 ORTHO05D009165 3.7e-163 579.7 857 46.3
Potri.002G000800 Populus trichocarpa HOM05D007213 ORTHO05D009165 1.7e-160 570.9 564 64.0
QL02p016552 Quercus lobata HOM05D007213 ORTHO05D009165 1.9e-159 567.4 877 49.5
Thecc.07G095200 Theobroma cacao HOM05D007213 ORTHO05D009165 2.5e-159 567.0 543 65.0
Ciclev10000432m.g Citrus clementina HOM05D007213 ORTHO05D009165 2.1e-158 563.9 576 63.4
Nn5g31088 Nelumbo nucifera HOM05D007213 ORTHO05D009165 1.0e-157 561.6 876 48.9
Sabra02G0000800 Salix brachista HOM05D007213 ORTHO05D009165 1.3e-155 554.7 601 60.2
Gohir.A04G034000 Gossypium hirsutum HOM05D007213 ORTHO05D009165 3.2e-154 550.1 543 63.5
Gohir.D05G349200 Gossypium hirsutum HOM05D007213 ORTHO05D009165 3.2e-154 550.1 543 63.9
ECA233G0001 Erigeron canadensis HOM05D007213 ORTHO05D009165 9.2e-154 548.5 809 45.5
MBI01_g32846_MAGBIO Magnolia biondii HOM05D007213 ORTHO05D009165 2.0e-153 547.4 548 58.9
Gorai.009G379100 Gossypium raimondii HOM05D007213 ORTHO05D009165 2.7e-153 547.0 543 63.9
Aqoxy5G00918 Aquilegia oxysepala HOM05D007213 ORTHO05D009165 1.0e-152 545.0 863 47.5
CAN.G1330.34 Capsicum annuum HOM05D007213 ORTHO05D009165 7.3e-151 538.9 580 55.5
FAN04G0748 Fragaria x ananassa HOM05D007213 ORTHO05D009165 8.1e-150 535.4 556 57.7
Peaxi162Scf00385g01231 Petunia axillaris HOM05D007213 ORTHO05D009165 2.3e-149 533.9 583 54.9
FAN18G3120 Fragaria x ananassa HOM05D007213 ORTHO05D009165 6.8e-149 532.3 583 59.0
Lj1g0003700 Lotus japonicus HOM05D007213 ORTHO05D009165 2.9e-147 526.9 872 42.9
Eucgr.F03636 Eucalyptus grandis HOM05D007213 ORTHO05D009165 1.9e-146 524.2 872 45.1
Glyma.01G245400 Glycine max HOM05D007213 ORTHO05D009165 6.0e-145 519.2 859 43.7
TPR.G21615 Trifolium pratense HOM05D007213 ORTHO05D009165 1.0e-144 518.5 569 54.1
DCAR_013347 Daucus carota HOM05D007213 ORTHO05D009165 2.3e-144 517.3 538 56.7
Ca_24332_v3 Cicer arietinum L. HOM05D007213 ORTHO05D009165 3.0e-144 516.9 858 43.6
COL.COLO4_36704 Corchorus olitorius HOM05D007213 ORTHO05D009165 3.0e-144 516.9 546 59.5
AUR62042263 Chenopodium quinoa HOM05D007213 ORTHO05D009165 1.5e-143 514.6 871 42.3
HanXRQChr07g0204351 Helianthus annuus HOM05D007213 ORTHO05D009165 1.6e-142 511.1 868 42.1
MD04G1004600 Malus domestica HOM05D007213 ORTHO05D009165 2.3e-141 507.3 551 59.2
Medtr5g004630 Medicago truncatula HOM05D007213 ORTHO05D009165 2.6e-140 503.8 563 52.9
EL10Ac5g11683 Beta vulgaris HOM05D007213 ORTHO05D009165 2.9e-139 500.4 878 41.5
FAN13G0578 Fragaria x ananassa HOM05D007213 ORTHO05D009165 8.4e-139 498.8 573 57.1
Cpa.g.sc36.83 Carica papaya HOM05D007213 ORTHO05D009165 1.4e-138 498.0 587 56.0
FvH4_5g26850 Fragaria vesca HOM05D007213 ORTHO05D009165 4.1e-138 496.5 573 57.1
AUR62036517 Chenopodium quinoa HOM05D007213 ORTHO05D009165 7.1e-138 495.7 863 40.3
Phvul.002G054800 Phaseolus vulgaris HOM05D007213 ORTHO05D009165 7.8e-137 492.3 874 45.0
FAN08G1354 Fragaria x ananassa HOM05D007213 ORTHO05D009165 8.6e-136 488.8 552 55.6
CANSAT54G2751 Cannabis sativa HOM05D007213 ORTHO05D009165 1.8e-133 481.1 581 51.6
PSO017G1686 Papaver somniferum HOM05D007213 ORTHO05D009165 2.6e-132 477.2 864 43.8
PSO170G0484 Papaver somniferum HOM05D007213 ORTHO05D009165 9.9e-132 475.3 869 44.2
Cc10_g00050 Coffea canephora HOM05D007213 ORTHO05D009165 1.7e-131 474.6 879 41.0
Sed0002482 Sechium edule HOM05D007213 ORTHO05D009165 8.4e-131 472.2 549 52.5
Lsat_1_v5_gn_8_25680 Lactuca sativa HOM05D007213 ORTHO05D009165 3.2e-130 470.3 878 42.0
THA.LOC104801651 Tarenaya hassleriana HOM05D007213 ORTHO05D009165 1.6e-129 468.0 545 55.6
Manes.05G113600 Manihot esculenta HOM05D007213 ORTHO05D009165 3.0e-128 463.8 867 46.0
A05p07120 Brassica napus HOM05D007213 ORTHO05D009165 1.5e-127 461.5 546 49.8
BraA05t19677Z Brassica rapa HOM05D007213 ORTHO05D009165 1.5e-127 461.5 546 49.8
Atru.chr13.12 Acer truncatum HOM05D007213 ORTHO05D009165 4.3e-127 459.9 895 41.9
TWI12G1047 Tripterygium wilfordii HOM05D007213 ORTHO05D009165 7.3e-127 459.1 542 57.2
Prupe.1G004400 Prunus persica HOM05D007213 ORTHO05D009165 3.5e-121 440.3 582 53.4
RcHm_v2.0_Chr7g0217751 Rosa chinensis HOM05D007213 ORTHO05D009165 6.0e-121 439.5 552 55.1
CARHR285120 Cardamine hirsuta HOM05D007213 ORTHO05D009165 8.7e-120 435.6 546 49.6
AL6G36700 Arabidopsis lyrata HOM05D007213 ORTHO05D009165 5.6e-119 433.0 546 50.4
BcaB02g09137 Brassica carinata HOM05D007213 ORTHO05D009165 9.6e-119 432.2 539 48.8
BolC4t22448H Brassica oleracea HOM05D007213 ORTHO05D009165 2.1e-118 431.0 546 47.8
Thhalv10016307m.g Eutrema salsugineum HOM05D007213 ORTHO05D009165 2.1e-118 431.0 556 48.9
AT5G25070 Arabidopsis thaliana HOM05D007213 ORTHO05D009165 1.4e-117 428.3 547 49.4
ATR0605G010 Amborella trichopoda HOM05D007213 ORTHO05D009165 9.0e-117 425.6 492 50.6
CDE06G2408 Ceratophyllum demersum HOM05D007213 ORTHO05D009165 1.5e-116 424.9 487 51.5
C04p08490 Brassica napus HOM05D007213 ORTHO05D009165 2.9e-115 420.6 547 47.0
Psat4g219720 Pisum sativum HOM05D007213 ORTHO05D009165 3.8e-115 420.2 477 56.0
VMungo1215G3163 Vigna mungo HOM05D007213 ORTHO05D009165 1.4e-114 418.3 540 52.0
Sp4g21590 Schrenkiella parvula HOM05D007213 ORTHO05D009165 5.1e-112 409.8 859 37.8
SpUn0018_0080 Schrenkiella parvula HOM05D007213 ORTHO05D009165 5.1e-112 409.8 859 37.8
Eucgr.B01563 Eucalyptus grandis HOM05D007213 ORTHO05D009165 1.1e-109 402.1 397 59.2
CiPaw.07G129300 Carya illinoinensis HOM05D007213 ORTHO05D009165 4.6e-105 386.7 682 45.2
Eucgr.B03972 Eucalyptus grandis HOM05D007213 ORTHO05D009165 1.9e-103 381.3 418 54.5
PGR031G0765 Punica granatum HOM05D007213 ORTHO05D009165 2.4e-101 374.4 862 42.0
Nitab4.5_0003364g0010 Nicotiana tabacum HOM05D007213 ORTHO05D009165 3.8e-99 367.1 681 40.5
BcaC02g12047 Brassica carinata HOM05D007213 ORTHO05D009165 1.4e-88 332.0 443 45.8
Zm00001eb035390 Zea mays HOM05D007213 ORTHO05D009165 1.1e-79 302.4 540 39.1
TAR381G0309 Trochodendron aralioides HOM05D007213 ORTHO05D009165 4.4e-79 300.4 553 42.7
Aa31LG9G12510 Aethionema arabicum HOM05D007213 ORTHO05D009165 6.3e-78 296.6 557 40.8
Sc07g0007610 Simmondsia chinensis HOM05D007213 ORTHO05D009165 1.4e-77 295.4 689 37.0
TAR381G1607 Trochodendron aralioides HOM05D007213 ORTHO05D009165 1.2e-73 282.3 263 62.4
HPP92_026844 Vanilla planifolia HOM05D007213 ORTHO05D009165 1.0e-72 279.3 386 48.7
Carub.0006s2290 Capsella rubella HOM05D007213 ORTHO05D009165 9.7e-71 272.7 547 40.6
Zm00001eb174530 Zea mays HOM05D007213 ORTHO05D009165 9.7e-71 272.7 578 35.6
Mapoly0055s0021 Marchantia polymorpha HOM05D007213 ORTHO05D009165 1.8e-64 251.9 539 37.3
SMO239G0074 Selaginella moellendorffii HOM05D007213 ORTHO05D009165 1.4e-56 225.7 531 37.3
AagrBONN_evm.TU.Sc2ySwM_344.2101 Anthoceros agrestis HOM05D007213 ORTHO05D009165 2.8e-54 218.0 552 30.8
Actinidia08359 Actinidia chinensis HOM05D007213 ORTHO05D009165 1.3e-51 209.1 402 46.0
Glyma.03G099100 Glycine max HOM05D007213 ORTHO05D009165 2.9e-51 208.0 291 47.4
Hma1.2p1_0810F.1_g221910 Hydrangea macrophylla HOM05D007213 ORTHO05D009165 3.0e-43 181.4 181 59.7
SEGI_34531 Sequoiadendron giganteum HOM05D007213 ORTHO05D009165 8.6e-35 153.3 570 28.8
Actinidia37289 Actinidia chinensis HOM05D007213 ORTHO05D009165 1.2e-31 142.9 169 55.6
Oeu000728.1 Olea europaea HOM05D007213 ORTHO05D009165 1.6e-25 122.5 113 60.2
Actinidia08360 Actinidia chinensis HOM05D007213 ORTHO05D009165 3.8e-22 111.3 77 80.5
HPP92_026843 Vanilla planifolia HOM05D007213 ORTHO05D009165 1.6e-20 105.9 171 43.3
Actinidia37290 Actinidia chinensis HOM05D007213 ORTHO05D009165 2.1e-20 105.5 107 61.7
Dinv19952 Davidia involucrata HOM05D007213 ORTHO05D009165 1.8e-16 92.4 70 75.7
Lsat_1_v5_gn_4_123560 Lactuca sativa HOM05D007213 ORTHO05D009165 4.0e-16 91.3 90 58.9
Lsat_1_v5_gn_4_171321 Lactuca sativa HOM05D007213 ORTHO05D009165 5.8e-15 87.4 90 55.6
Lsat_1_v5_gn_2_25501 Lactuca sativa HOM05D007213 ORTHO05D009165 7.6e-15 87.0 90 56.7
HPP92_019587 Vanilla planifolia HOM05D007213 ORTHO05D009165 1.6e-12 79.3 125 40.8
ECA238G3550 Erigeron canadensis HOM05D008258 ORTHO05D003386 2.6e-07 62.0 106 43.4


User provided reference genes

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