Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.5e-248 861.7 440 100.0
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.2e-247 859.4 440 99.8
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 9.2e-219 763.5 440 89.5
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 6.0e-218 760.8 440 89.3
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 6.2e-215 750.7 440 88.6
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.8e-214 749.2 442 88.2
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 9.2e-211 736.9 439 87.2
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 5.1e-209 731.1 442 85.7
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 5.1e-209 731.1 443 85.3
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 5.6e-208 727.6 442 84.4
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.6e-207 726.1 440 85.0
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 3.6e-207 724.9 443 84.7
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 2.3e-206 722.2 443 84.9
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 1.2e-205 719.9 442 83.5
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 3.4e-205 718.4 443 84.2
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 5.8e-205 717.6 440 83.2
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 7.5e-205 717.2 441 84.6
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.3e-204 716.5 441 84.4
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 2.2e-204 715.7 444 82.9
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 4.9e-204 714.5 443 83.5
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 6.4e-204 714.1 440 83.2
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 1.9e-203 712.6 441 83.2
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 2.4e-203 712.2 441 82.8
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 3.2e-203 711.8 443 82.8
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 4.1e-203 711.4 444 83.3
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 5.4e-203 711.1 441 83.9
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 1.2e-202 709.9 446 84.8
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 1.2e-202 709.9 440 82.7
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.6e-202 709.5 439 83.1
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 2.1e-202 709.1 445 83.4
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.1e-202 709.1 444 82.7
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 2.7e-202 708.8 443 83.3
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.7e-202 708.8 441 84.1
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 2.7e-202 708.8 440 82.5
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 2.7e-202 708.8 447 83.2
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 3.5e-202 708.4 442 82.6
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 6.0e-202 707.6 444 82.4
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 7.8e-202 707.2 443 82.4
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 7.8e-202 707.2 441 83.9
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 2.3e-201 705.7 446 82.3
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.0e-201 705.3 441 83.9
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 3.9e-201 704.9 419 86.6
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 1.1e-200 703.4 444 81.5
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.1e-200 703.4 446 82.5
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 1.5e-200 703.0 441 82.3
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 7.3e-200 700.7 442 81.9
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 9.5e-200 700.3 441 81.9
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 9.5e-200 700.3 441 81.9
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 9.5e-200 700.3 439 82.7
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 9.5e-200 700.3 443 82.2
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 2.1e-199 699.1 438 81.7
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 3.6e-199 698.4 443 81.5
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 4.7e-199 698.0 439 82.2
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 6.2e-199 697.6 441 82.1
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 8.1e-199 697.2 440 81.1
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 1.1e-198 696.8 443 83.7
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.8e-198 696.0 439 82.2
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 8.9e-198 693.7 443 80.8
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 8.9e-198 693.7 443 81.9
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 2.0e-197 692.6 439 81.1
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 7.6e-197 690.6 445 80.4
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 9.9e-197 690.3 443 80.8
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 2.2e-196 689.1 437 80.3
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.2e-196 689.1 443 80.8
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.9e-196 688.7 440 81.1
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.4e-195 686.4 440 81.4
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 4.2e-195 684.9 438 80.8
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 2.7e-194 682.2 443 79.7
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 6.0e-194 681.0 440 80.7
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 7.8e-194 680.6 440 80.7
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 1.0e-193 680.2 438 80.8
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 3.9e-193 678.3 410 84.1
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 5.1e-193 677.9 442 80.1
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 6.6e-193 677.6 438 80.8
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.1e-192 676.8 410 83.7
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 1.5e-192 676.4 439 79.5
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.5e-192 676.4 441 78.0
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 1.5e-192 676.4 436 78.9
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 1.9e-192 676.0 441 78.5
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 7.3e-192 674.1 439 80.6
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 7.3e-192 674.1 413 83.5
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 9.6e-192 673.7 444 77.9
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 2.1e-191 672.5 444 80.0
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 3.6e-191 671.8 438 79.9
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 3.6e-191 671.8 438 79.9
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 3.6e-191 671.8 438 80.1
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 6.2e-191 671.0 440 79.3
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 8.1e-191 670.6 441 79.1
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.8e-190 669.5 443 79.9
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 2.4e-190 669.1 448 78.6
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 1.2e-189 666.8 440 79.3
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 3.4e-189 665.2 448 79.2
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 9.9e-189 663.7 440 79.1
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.7e-188 662.9 396 85.6
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 2.9e-188 662.1 439 78.8
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 2.9e-188 662.1 439 78.8
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 6.4e-188 661.0 440 79.3
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 6.4e-188 661.0 442 79.0
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 2.4e-187 659.1 438 78.8
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 6.0e-186 654.4 396 84.3
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 6.0e-186 654.4 396 84.3
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 7.8e-186 654.1 443 78.8
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 1.3e-185 653.3 443 78.8
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 2.3e-185 652.5 441 77.1
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 2.3e-185 652.5 441 77.1
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 5.1e-185 651.4 482 72.8
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 5.6e-184 647.9 388 86.1
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 5.6e-184 647.9 377 87.0
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 9.6e-184 647.1 440 78.6
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 5.3e-182 641.3 395 81.8
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.9e-180 635.6 398 80.4
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 3.8e-180 635.2 380 86.8
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 3.8e-180 635.2 433 75.5
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 2.7e-178 629.0 421 77.2
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 2.7e-178 629.0 438 73.7
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 1.0e-177 627.1 486 68.5
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 6.7e-177 624.4 425 75.3
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 6.7e-177 624.4 438 74.0
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 6.2e-175 617.8 444 75.5
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 1.1e-174 617.1 443 73.4
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 2.5e-171 605.9 441 73.0
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.3e-161 572.8 366 81.1
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.4e-158 563.5 390 77.2
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 1.8e-153 546.6 307 91.5
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 1.7e-151 540.0 400 68.5
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.8e-150 536.6 360 78.1
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 9.1e-150 534.3 405 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 2.2e-148 529.6 398 68.6
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 5.5e-147 525.0 365 70.4
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.5e-144 516.9 377 69.2
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 4.4e-144 515.4 366 69.4
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 9.7e-144 514.2 377 68.4
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.2e-141 507.3 390 64.9
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 2.6e-141 506.1 361 72.0
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 2.6e-141 506.1 383 65.8
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 5.9e-141 505.0 394 65.5
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 5.9e-141 505.0 412 64.3
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 7.7e-141 504.6 394 65.5
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 8.2e-135 484.6 397 61.2
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.1e-134 484.2 361 67.3
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 3.2e-131 472.6 397 60.7
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 4.0e-129 465.7 360 63.9
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 3.7e-127 459.1 317 76.3
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 5.7e-112 408.7 365 60.8
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 1.6e-98 364.0 368 55.4
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 3.3e-91 339.7 302 60.9
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 2.4e-81 307.0 225 71.6
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 1.1e-70 271.6 186 79.0
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.3e-66 258.1 328 43.9
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 2.1e-61 240.7 139 89.2
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 2.5e-59 233.8 198 61.6
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 8.1e-58 228.8 123 86.2
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 3.8e-55 219.9 154 72.7
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 6.5e-39 166.0 162 54.9
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 4.6e-37 159.8 119 68.9
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 6.1e-37 159.5 111 78.4
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 4.8e-34 149.8 81 92.6
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 3.8e-31 140.2 82 86.6
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 1.6e-29 134.8 123 56.1
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.7e-26 123.6 80 70.0
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 4.4e-19 100.1 142 43.0
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 8.2e-18 95.9 51 82.4
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 5.0e-15 86.7 94 51.1
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 1.2e-08 65.5 143 35.0


User provided reference genes

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