Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032932 Camellia sinensis var. sinensis HOM05D000066 ORTHO05D000055 2.2e-48 195.3 99 100.0
CSS0021714 Camellia sinensis var. sinensis HOM05D000066 ORTHO05D000055 3.3e-15 85.1 42 95.2
Haze_12990 Corylus avellana HOM05D000066 ORTHO05D000055 1.1e-13 80.1 42 88.1
Actinidia30498 Actinidia chinensis HOM05D000066 ORTHO05D000055 1.8e-13 79.3 42 85.7
Rhsim06G0155000 Rhododendron simsii HOM05D000066 ORTHO05D000055 2.3e-13 79.0 42 85.7
Duzib248G0560 Durio zibethinus HOM05D000066 ORTHO05D000055 3.1e-13 78.6 42 85.7
Gohir.A13G058300 Gossypium hirsutum HOM05D000066 ORTHO05D000055 3.1e-13 78.6 42 85.7
Gohir.D13G063700 Gossypium hirsutum HOM05D000066 ORTHO05D000055 3.1e-13 78.6 42 85.7
Gorai.013G072200 Gossypium raimondii HOM05D000066 ORTHO05D000055 3.1e-13 78.6 42 85.7
Dinv18558 Davidia involucrata HOM05D000066 ORTHO05D000055 4.0e-13 78.2 42 83.3
GSVIVG01000416001 Vitis vinifera HOM05D000066 ORTHO05D000055 4.0e-13 78.2 41 87.8
CiPaw.03G165100 Carya illinoinensis HOM05D000066 ORTHO05D000055 5.2e-13 77.8 42 83.3
Eucgr.K00883 Eucalyptus grandis HOM05D000066 ORTHO05D000055 5.2e-13 77.8 42 83.3
Cpa.g.sc34.46 Carica papaya HOM05D000066 ORTHO05D000055 6.8e-13 77.4 42 83.3
CANSAT64G1912 Cannabis sativa HOM05D000066 ORTHO05D000055 8.9e-13 77.0 42 81.0
Oeu040651.1 Olea europaea HOM05D000066 ORTHO05D000055 8.9e-13 77.0 42 81.0
MSTRG.6542 Avicennia marina HOM05D000066 ORTHO05D000055 1.2e-12 76.6 41 82.9
Cfa014477 Carpinus fangiana HOM05D000066 ORTHO05D000055 1.2e-12 76.6 41 85.4
Duzib132G0064 Durio zibethinus HOM05D000066 ORTHO05D000055 1.2e-12 76.6 41 85.4
Lj1A748T29 Lonicera japonica HOM05D000066 ORTHO05D000055 1.2e-12 76.6 42 81.0
Potri.019G125000 Populus trichocarpa HOM05D000066 ORTHO05D000055 1.5e-12 76.3 42 78.6
Sabra19G0123300 Salix brachista HOM05D000066 ORTHO05D000055 1.5e-12 76.3 42 78.6
Sabra19G0131300 Salix brachista HOM05D000066 ORTHO05D000055 1.5e-12 76.3 42 78.6
MSTRG.14838 Avicennia marina HOM05D000066 ORTHO05D000055 2.0e-12 75.9 42 81.0
Migut.M00382 Erythranthe guttata HOM05D000066 ORTHO05D000055 2.0e-12 75.9 42 78.6
FvH4_6g43860 Fragaria vesca HOM05D000066 ORTHO05D000055 2.0e-12 75.9 41 82.9
FAN02G4126 Fragaria x ananassa HOM05D000066 ORTHO05D000055 2.0e-12 75.9 41 82.9
FAN05G1341 Fragaria x ananassa HOM05D000066 ORTHO05D000055 2.0e-12 75.9 41 82.9
FAN09G4694 Fragaria x ananassa HOM05D000066 ORTHO05D000055 2.0e-12 75.9 41 82.9
FAN14G5778 Fragaria x ananassa HOM05D000066 ORTHO05D000055 2.0e-12 75.9 41 82.9
Glyma.13G304400 Glycine max HOM05D000066 ORTHO05D000055 2.0e-12 75.9 42 81.0
Phvul.005G111300 Phaseolus vulgaris HOM05D000066 ORTHO05D000055 2.0e-12 75.9 42 81.0
SGA_v2.0_scaffold34G13891 Striga asiatica HOM05D000066 ORTHO05D000055 2.0e-12 75.9 42 81.0
Actinidia12483 Actinidia chinensis HOM05D000066 ORTHO05D000055 2.6e-12 75.5 42 81.0
CiPaw.04G119900 Carya illinoinensis HOM05D000066 ORTHO05D000055 2.6e-12 75.5 42 81.0
Thecc.02G165300 Theobroma cacao HOM05D000066 ORTHO05D000055 2.6e-12 75.5 42 81.0
SGA_v2.0_scaffold70G23431 Striga asiatica HOM05D000066 ORTHO05D000055 3.4e-12 75.1 41 80.5
VMungo1080G0502 Vigna mungo HOM05D000066 ORTHO05D000055 3.4e-12 75.1 42 81.0
Atru.chr6.3109 Acer truncatum HOM05D000066 ORTHO05D000055 4.4e-12 74.7 42 81.0
Hma1.2p1_0712F.1_g207540 Hydrangea macrophylla HOM05D000066 ORTHO05D000055 5.8e-12 74.3 42 81.0
EL10Ac9g22382 Beta vulgaris HOM05D000066 ORTHO05D000055 7.5e-12 73.9 42 73.8
Ca_20667_v3 Cicer arietinum L. HOM05D000066 ORTHO05D000055 7.5e-12 73.9 41 78.0
Gohir.A03G162700 Gossypium hirsutum HOM05D000066 ORTHO05D000055 7.5e-12 73.9 41 80.5
Gohir.D02G186000 Gossypium hirsutum HOM05D000066 ORTHO05D000055 7.5e-12 73.9 41 80.5
Gorai.005G208300 Gossypium raimondii HOM05D000066 ORTHO05D000055 7.5e-12 73.9 41 80.5
Manes.12G076800 Manihot esculenta HOM05D000066 ORTHO05D000055 7.5e-12 73.9 42 76.2
Nn1g06912 Nelumbo nucifera HOM05D000066 ORTHO05D000055 7.5e-12 73.9 42 78.6
RcHm_v2.0_Chr2g0160611 Rosa chinensis HOM05D000066 ORTHO05D000055 7.5e-12 73.9 41 78.0
Lalb_Chr14g0375571 Lupinus albus HOM05D000066 ORTHO05D000055 9.9e-12 73.6 41 80.5
Lalb_Chr24g0393581 Lupinus albus HOM05D000066 ORTHO05D000055 9.9e-12 73.6 41 80.5
arahy.Tifrunner.gnm1.ann1.4KDK0P Arachis hypogaea HOM05D000066 ORTHO05D000055 1.3e-11 73.2 42 73.8
Ca_01561_v3 Cicer arietinum L. HOM05D000066 ORTHO05D000055 1.3e-11 73.2 42 73.8
DCAR_019205 Daucus carota HOM05D000066 ORTHO05D000055 1.3e-11 73.2 42 76.2
Glyma.12G197600 Glycine max HOM05D000066 ORTHO05D000055 1.3e-11 73.2 42 78.6
Sabra13G0122500 Salix brachista HOM05D000066 ORTHO05D000055 1.3e-11 73.2 41 78.0
TPR.G18061 Trifolium pratense HOM05D000066 ORTHO05D000055 1.3e-11 73.2 42 73.8
VMungo1127G1182 Vigna mungo HOM05D000066 ORTHO05D000055 1.3e-11 73.2 41 78.0
Medtr2g089140 Medicago truncatula HOM05D000066 ORTHO05D000055 1.7e-11 72.8 42 73.8
Prupe.3G223200 Prunus persica HOM05D000066 ORTHO05D000055 1.7e-11 72.8 61 60.7
QL08p034464 Quercus lobata HOM05D000066 ORTHO05D000055 1.7e-11 72.8 41 80.5
QL08p035241 Quercus lobata HOM05D000066 ORTHO05D000055 1.7e-11 72.8 41 80.5
arahy.Tifrunner.gnm1.ann1.RN7KHK Arachis hypogaea HOM05D000066 ORTHO05D000055 2.2e-11 72.4 42 73.8
arahy.Tifrunner.gnm1.ann1.ZJ180B Arachis hypogaea HOM05D000066 ORTHO05D000055 2.2e-11 72.4 42 73.8
Phvul.011G107000 Phaseolus vulgaris HOM05D000066 ORTHO05D000055 2.2e-11 72.4 41 78.0
Sc12g0002520 Simmondsia chinensis HOM05D000066 ORTHO05D000055 2.2e-11 72.4 42 73.8
arahy.Tifrunner.gnm1.ann1.6NV05N Arachis hypogaea HOM05D000066 ORTHO05D000055 2.9e-11 72.0 41 75.6
Sed0012030 Sechium edule HOM05D000066 ORTHO05D000055 2.9e-11 72.0 41 75.6
TWI75G0306 Tripterygium wilfordii HOM05D000066 ORTHO05D000055 2.9e-11 72.0 41 78.0
ClCG00G004070 Citrullus lanatus HOM05D000066 ORTHO05D000055 3.7e-11 71.6 41 75.6
ClCG02G001530 Citrullus lanatus HOM05D000066 ORTHO05D000055 3.7e-11 71.6 41 75.6
DCAR_009699 Daucus carota HOM05D000066 ORTHO05D000055 3.7e-11 71.6 42 71.4
ClCG02G011150 Citrullus lanatus HOM05D000066 ORTHO05D000055 4.9e-11 71.2 41 78.0
DCAR_021201 Daucus carota HOM05D000066 ORTHO05D000055 4.9e-11 71.2 42 69.0
Glyma.12G101800 Glycine max HOM05D000066 ORTHO05D000055 4.9e-11 71.2 41 75.6
Potri.013G152400 Populus trichocarpa HOM05D000066 ORTHO05D000055 6.4e-11 70.9 41 75.6
Sed0010364 Sechium edule HOM05D000066 ORTHO05D000055 8.3e-11 70.5 41 78.0
MELO3C018785.2 Cucumis melo HOM05D000066 ORTHO05D000055 1.1e-10 70.1 41 73.2
CsaV3_7G003920 Cucumis sativus L. HOM05D000066 ORTHO05D000055 1.1e-10 70.1 41 73.2
HanXRQChr17g0543231 Helianthus annuus HOM05D000066 ORTHO05D000055 1.1e-10 70.1 41 73.2
MD09G1102600 Malus domestica HOM05D000066 ORTHO05D000055 1.1e-10 70.1 41 73.2
Hund01199 Selenicereus undatus HOM05D000066 ORTHO05D000055 1.1e-10 70.1 41 75.6
Sc21g0001940 Simmondsia chinensis HOM05D000066 ORTHO05D000055 1.1e-10 70.1 41 70.7
TPR.G694 Trifolium pratense HOM05D000066 ORTHO05D000055 1.1e-10 70.1 42 73.8
ECA246G1718 Erigeron canadensis HOM05D000066 ORTHO05D000055 1.4e-10 69.7 41 70.7
Lsat_1_v5_gn_3_43161 Lactuca sativa HOM05D000066 ORTHO05D000055 1.4e-10 69.7 41 70.7
MD17G1089900 Malus domestica HOM05D000066 ORTHO05D000055 1.4e-10 69.7 42 71.4
TWI18G0782 Tripterygium wilfordii HOM05D000066 ORTHO05D000055 1.4e-10 69.7 41 78.0
AL6G49720 Arabidopsis lyrata HOM05D000066 ORTHO05D000055 1.9e-10 69.3 42 76.2
AT4G03210 Arabidopsis thaliana HOM05D000066 ORTHO05D000055 1.9e-10 69.3 42 76.2
Carub.0006s3384 Capsella rubella HOM05D000066 ORTHO05D000055 1.9e-10 69.3 42 76.2
CARHR251660 Cardamine hirsuta HOM05D000066 ORTHO05D000055 1.9e-10 69.3 42 76.2
AUR62033729 Chenopodium quinoa HOM05D000066 ORTHO05D000055 1.9e-10 69.3 41 75.6
TAR271G0002 Trochodendron aralioides HOM05D000066 ORTHO05D000055 1.9e-10 69.3 42 73.8
ATR0911G001 Amborella trichopoda HOM05D000066 ORTHO05D000055 2.4e-10 68.9 41 75.6
Ciclev10016129m.g Citrus clementina HOM05D000066 ORTHO05D000055 2.4e-10 68.9 40 77.5
HanXRQChr15g0479351 Helianthus annuus HOM05D000066 ORTHO05D000055 2.4e-10 68.9 41 70.7
Lj3g0003219 Lotus japonicus HOM05D000066 ORTHO05D000055 2.4e-10 68.9 41 73.2
MBI02_g35317_MAGBIO Magnolia biondii HOM05D000066 ORTHO05D000055 2.4e-10 68.9 41 73.2
Ah.01g005150 Amaranthus hybridus HOM05D000066 ORTHO05D000055 3.2e-10 68.6 40 72.5
Aqoxy4G01888 Aquilegia oxysepala HOM05D000066 ORTHO05D000055 3.2e-10 68.6 42 71.4
AUR62025145 Chenopodium quinoa HOM05D000066 ORTHO05D000055 5.4e-10 67.8 41 70.7
TAR627G0245 Trochodendron aralioides HOM05D000066 ORTHO05D000055 5.4e-10 67.8 41 75.6
COL.COLO4_13039 Corchorus olitorius HOM05D000066 ORTHO05D000055 7.1e-10 67.4 41 75.6
Nitab4.5_0001134g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000055 7.1e-10 67.4 41 73.2
Nitab4.5_0009032g0020 Nicotiana tabacum HOM05D000066 ORTHO05D000055 7.1e-10 67.4 41 73.2
Glyma.U031113 Glycine max HOM05D000066 ORTHO05D000055 9.2e-10 67.0 61 55.7
Peaxi162Scf00007g01511 Petunia axillaris HOM05D000066 ORTHO05D000055 9.2e-10 67.0 42 71.4
BcaB01g02513 Brassica carinata HOM05D000066 ORTHO05D000055 1.2e-09 66.6 42 71.4
PGR142G3998 Punica granatum HOM05D000066 ORTHO05D000055 1.2e-09 66.6 41 75.6
Medtr4g045853 Medicago truncatula HOM05D000066 ORTHO05D000055 1.6e-09 66.2 41 70.7
PSO541G5873 Papaver somniferum HOM05D000066 ORTHO05D000055 1.6e-09 66.2 42 71.4
PSO675G7385 Papaver somniferum HOM05D000066 ORTHO05D000055 1.6e-09 66.2 42 71.4
THA.LOC104815953 Tarenaya hassleriana HOM05D000066 ORTHO05D000055 1.6e-09 66.2 41 68.3
BcaB01g01971 Brassica carinata HOM05D000066 ORTHO05D000055 2.1e-09 65.9 42 73.8
Lalb_Chr03g0028941 Lupinus albus HOM05D000066 ORTHO05D000055 2.1e-09 65.9 41 70.7
SEGI_36875 Sequoiadendron giganteum HOM05D000066 ORTHO05D000055 2.1e-09 65.9 40 72.5
THA.LOC104801200 Tarenaya hassleriana HOM05D000066 ORTHO05D000055 2.1e-09 65.9 41 68.3
Thhalv10028859m.g Eutrema salsugineum HOM05D000066 ORTHO05D000055 2.7e-09 65.5 42 69.0
Nn1g03757 Nelumbo nucifera HOM05D000066 ORTHO05D000055 2.7e-09 65.5 41 70.7
SHI10288 Sapria himalayana HOM05D000066 ORTHO05D000055 2.7e-09 65.5 42 66.7
Sp6g03250 Schrenkiella parvula HOM05D000066 ORTHO05D000055 2.7e-09 65.5 42 69.0
BcaC01g06697 Brassica carinata HOM05D000066 ORTHO05D000055 4.6e-09 64.7 42 71.4
BcaC04g23953 Brassica carinata HOM05D000066 ORTHO05D000055 4.6e-09 64.7 42 71.4
BcaC04g23991 Brassica carinata HOM05D000066 ORTHO05D000055 4.6e-09 64.7 42 71.4
A03p30550 Brassica napus HOM05D000066 ORTHO05D000055 4.6e-09 64.7 42 71.4
A09p02500 Brassica napus HOM05D000066 ORTHO05D000055 4.6e-09 64.7 42 71.4
C03p37070 Brassica napus HOM05D000066 ORTHO05D000055 4.6e-09 64.7 42 71.4
C09p02980 Brassica napus HOM05D000066 ORTHO05D000055 4.6e-09 64.7 42 71.4
BolC3t16005H Brassica oleracea HOM05D000066 ORTHO05D000055 4.6e-09 64.7 42 71.4
BolC9t53226H Brassica oleracea HOM05D000066 ORTHO05D000055 4.6e-09 64.7 42 71.4
BraA03t12235Z Brassica rapa HOM05D000066 ORTHO05D000055 4.6e-09 64.7 42 71.4
BraA09t35897Z Brassica rapa HOM05D000066 ORTHO05D000055 4.6e-09 64.7 42 71.4
Lsat_1_v5_gn_4_69800 Lactuca sativa HOM05D000066 ORTHO05D000055 4.6e-09 64.7 41 73.2
Aa31LG5G2710 Aethionema arabicum HOM05D000066 ORTHO05D000055 6.0e-09 64.3 42 73.8
SEGI_11780 Sequoiadendron giganteum HOM05D000066 ORTHO05D000055 1.0e-08 63.5 40 70.0
Solyc07g052980.3 Solanum lycopersicum HOM05D000066 ORTHO05D000055 1.0e-08 63.5 41 68.3
Sopen07g026530 Solanum pennellii HOM05D000066 ORTHO05D000055 1.0e-08 63.5 41 68.3
PGSC0003DMG400026189 Solanum tuberosum HOM05D000066 ORTHO05D000055 1.0e-08 63.5 41 68.3
Lj3g0001866 Lotus japonicus HOM05D000066 ORTHO05D000055 1.7e-08 62.8 42 59.5
CDE05G2954 Ceratophyllum demersum HOM05D000066 ORTHO05D000055 2.3e-08 62.4 41 68.3
CAN.G86.33 Capsicum annuum HOM05D000066 ORTHO05D000055 3.0e-08 62.0 41 65.9
Cc05_g05510 Coffea canephora HOM05D000066 ORTHO05D000055 3.0e-08 62.0 42 71.4
SalBow7G0656 Salvia bowleyana HOM05D000066 ORTHO05D000055 3.0e-08 62.0 42 66.7
CDE10G0409 Ceratophyllum demersum HOM05D000066 ORTHO05D000055 8.6e-08 60.5 41 65.9
SEGI_14705 Sequoiadendron giganteum HOM05D000066 ORTHO05D000055 8.6e-08 60.5 40 67.5
unitig_699.g19609 Utricularia gibba HOM05D000066 ORTHO05D000055 1.9e-07 59.3 41 61.0
CDE05G3521 Ceratophyllum demersum HOM05D000066 ORTHO05D000055 2.5e-07 58.9 41 63.4
HPP92_013251 Vanilla planifolia HOM05D000066 ORTHO05D000055 4.3e-07 58.2 40 55.0
HPP92_002206 Vanilla planifolia HOM05D000066 ORTHO05D000055 1.6e-06 56.2 40 57.5
HPP92_013248 Vanilla planifolia HOM05D000066 ORTHO05D000055 1.6e-06 56.2 40 52.5
Gohir.D05G078300 Gossypium hirsutum HOM05D000066 ORTHO05D000055 2.1e-06 55.8 41 56.1
Gorai.009G079800 Gossypium raimondii HOM05D000066 ORTHO05D000055 2.1e-06 55.8 41 56.1
HPP92_026543 Vanilla planifolia HOM05D000066 ORTHO05D000055 2.1e-06 55.8 40 57.5
GSVIVG01029372001 Vitis vinifera HOM05D000066 ORTHO05D000055 2.1e-06 55.8 41 58.5
Os04g0631200 Oryza sativa ssp. japonica HOM05D000066 ORTHO05D049818 3.6e-06 55.1 40 57.5
Gohir.A05G075500 Gossypium hirsutum HOM05D000066 ORTHO05D000055 6.2e-06 54.3 41 53.7
CSS0045305 Camellia sinensis var. sinensis HOM05D001079 ORTHO05D000945 8.1e-06 53.9 27 96.3
SGA_v2.0_scaffold66G22463 Striga asiatica HOM05D000066 ORTHO05D000055 8.1e-06 53.9 34 64.7


User provided reference genes

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