Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-204 716.1 370 100.0
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.5e-203 711.4 370 99.5
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 5.8e-166 587.8 368 80.7
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 7.6e-166 587.4 367 80.4
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 3.2e-164 582.0 380 77.9
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 3.9e-162 575.1 367 79.6
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 9.0e-151 537.3 366 75.1
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 7.1e-148 527.7 367 73.6
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 5.7e-145 518.1 364 72.3
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 9.6e-145 517.3 364 72.0
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.3e-144 516.9 364 72.0
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 6.2e-144 514.6 365 71.5
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.0e-141 507.3 366 68.6
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 1.7e-141 506.5 367 69.5
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 5.0e-141 505.0 364 70.9
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 1.1e-140 503.8 366 69.1
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 1.4e-140 503.4 324 81.2
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 2.5e-140 502.7 367 68.4
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 2.1e-139 499.6 371 69.5
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 2.1e-139 499.6 365 71.5
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 5.1e-138 495.0 367 67.3
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 6.7e-138 494.6 367 67.0
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 3.3e-137 492.3 367 67.3
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 7.4e-137 491.1 365 66.8
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 7.4e-137 491.1 369 68.3
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 9.7e-137 490.7 366 68.9
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 2.8e-136 489.2 366 65.8
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 8.2e-136 487.6 367 67.6
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 1.5e-134 483.4 366 66.1
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 7.7e-134 481.1 365 67.1
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 8.5e-133 477.6 366 66.9
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.5e-132 476.1 381 64.0
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 1.2e-131 473.8 368 64.9
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 1.6e-131 473.4 364 66.2
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 9.7e-129 464.2 366 65.8
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.8e-128 462.6 363 66.9
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 6.3e-128 461.5 365 63.8
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 1.4e-127 460.3 363 64.5
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 1.4e-127 460.3 363 64.5
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 2.4e-127 459.5 331 69.2
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 3.1e-127 459.1 366 64.8
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 3.1e-127 459.1 365 65.2
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 6.9e-127 458.0 367 63.2
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 6.9e-127 458.0 362 66.3
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 9.1e-127 457.6 362 66.0
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 1.2e-126 457.2 363 66.7
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 2.0e-126 456.4 366 62.6
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 2.6e-126 456.1 366 63.7
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 4.5e-126 455.3 366 62.6
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 3.2e-124 449.1 372 61.8
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.6e-123 446.8 366 62.6
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 7.9e-123 444.5 365 61.9
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 1.0e-122 444.1 363 64.2
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 3.0e-122 442.6 386 60.4
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 5.1e-122 441.8 363 63.9
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 1.1e-121 440.7 368 60.9
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 2.6e-121 439.5 366 61.7
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 2.6e-121 439.5 366 62.0
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 5.7e-121 438.3 372 62.4
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 9.7e-121 437.6 367 61.6
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.2e-120 436.4 367 62.4
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 2.2e-120 436.4 390 57.9
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 8.2e-120 434.5 363 64.2
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.1e-119 432.6 363 63.6
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 7.0e-119 431.4 368 59.8
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 9.1e-119 431.0 365 60.3
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 2.0e-118 429.9 363 63.4
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.0e-117 427.6 364 61.3
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 3.8e-117 425.6 317 69.7
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 6.5e-117 424.9 365 61.1
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 8.5e-117 424.5 367 60.2
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 3.2e-116 422.5 364 61.5
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.2e-115 420.6 367 59.1
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.6e-115 420.2 369 60.7
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.1e-115 419.9 361 62.6
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.0e-114 417.5 364 59.6
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 1.4e-114 417.2 404 55.0
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 2.3e-114 416.4 365 60.0
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 3.0e-114 416.0 367 57.8
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 8.8e-114 414.5 363 60.6
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.1e-113 414.1 368 59.8
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.7e-112 410.2 363 59.2
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 2.8e-112 409.5 367 58.0
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 2.8e-112 409.5 370 56.5
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 3.7e-112 409.1 365 57.3
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 6.3e-112 408.3 364 59.1
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.8e-111 406.8 315 69.2
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 4.1e-111 405.6 379 57.5
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 9.1e-111 404.4 367 58.0
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 2.0e-110 403.3 365 58.1
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 7.7e-110 401.4 364 59.6
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 7.7e-110 401.4 365 58.1
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 1.0e-109 401.0 402 54.2
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 2.9e-109 399.4 364 57.7
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 3.8e-109 399.1 365 58.1
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 1.1e-108 397.5 365 58.1
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 7.2e-108 394.8 370 55.1
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 2.1e-107 393.3 368 55.4
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 3.6e-107 392.5 316 63.6
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 4.7e-107 392.1 369 55.6
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 1.8e-106 390.2 403 52.9
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 1.8e-106 390.2 478 48.7
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 2.3e-106 389.8 366 57.1
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 5.2e-106 388.7 365 57.0
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 6.8e-106 388.3 365 57.3
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 2.6e-105 386.3 364 56.9
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 3.4e-105 386.0 364 56.6
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 4.4e-105 385.6 312 64.7
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.7e-105 385.2 210 96.7
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 9.8e-105 384.4 363 55.6
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 3.7e-104 382.5 399 53.1
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.1e-103 380.9 366 56.8
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.8e-103 380.2 352 56.0
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 1.8e-103 380.2 354 57.9
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 2.4e-103 379.8 375 55.5
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 4.1e-103 379.0 349 56.7
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 1.6e-102 377.1 500 46.0
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 5.9e-102 375.2 281 65.5
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 3.8e-101 372.5 353 56.4
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 6.5e-101 371.7 563 43.5
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 8.5e-101 371.3 353 56.4
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 4.2e-100 369.0 290 64.1
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 1.6e-99 367.1 353 55.8
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 4.0e-98 362.5 371 50.7
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 8.8e-98 361.3 365 54.5
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 1.5e-97 360.5 478 44.8
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 1.3e-96 357.5 365 53.4
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 3.5e-94 349.4 371 52.0
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 1.3e-93 347.4 315 59.0
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 3.3e-92 342.8 313 59.7
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.2e-86 324.3 204 80.9
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.5e-86 322.8 204 80.4
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.2e-82 308.9 163 98.2
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 5.2e-82 308.9 299 55.9
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 3.4e-81 306.2 207 73.4
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.4e-81 305.8 189 87.8
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 8.3e-80 301.6 301 54.8
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.1e-75 287.0 230 61.7
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 3.6e-75 286.2 210 66.7
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.4e-72 275.4 166 84.9
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.2e-70 271.2 206 68.4
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 6.0e-70 268.9 316 46.8
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.1e-68 264.6 313 49.2
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 3.6e-67 259.6 201 65.7
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.1e-63 248.1 164 76.2
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.9e-63 247.3 164 74.4
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 4.6e-62 242.7 164 75.0
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 7.8e-62 241.9 164 74.4
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 5.1e-61 239.2 374 36.9
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 8.6e-61 238.4 167 73.7
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 9.6e-60 235.0 339 40.1
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 5.8e-57 225.7 306 45.1
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.7e-56 224.2 164 70.7
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 3.8e-56 223.0 203 57.1
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-55 221.1 152 81.6
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 4.2e-55 219.5 373 37.8
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 9.3e-55 218.4 374 38.2
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 4.6e-54 216.1 378 35.4
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 1.7e-53 214.2 368 36.4
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 8.7e-53 211.8 155 67.7
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 5.3e-50 202.6 164 64.6
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 7.6e-49 198.7 371 34.0
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 7.1e-47 192.2 155 60.0
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 6.0e-46 189.1 155 59.4
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.6e-44 181.8 110 86.4
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 4.5e-41 172.9 125 68.8
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 9.9e-41 171.8 370 30.5
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 2.2e-40 170.6 257 40.9
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 9.3e-39 165.2 122 64.8
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 7.9e-38 162.2 132 59.8
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 1.9e-36 157.5 172 47.7
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 2.8e-35 153.7 136 58.8
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 6.2e-35 152.5 136 59.6
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 1.3e-27 128.3 127 48.0
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 6.9e-18 95.9 251 31.1
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 6.5e-16 89.4 267 29.6
Cfa024504 Carpinus fangiana HOM05D002209 ORTHO05D004761 3.6e-06 57.0 409 23.0


User provided reference genes

Program Settings