Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032916 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.3e-60 236.1 116 100.0
CSS0046652 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.3e-52 209.5 116 90.5
CSS0046591 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.2e-47 192.2 134 75.4
CSS0001709 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.4e-41 172.9 103 84.5
CSS0002085 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.0e-39 166.8 103 82.5
CSS0028889 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 5.0e-39 164.5 115 75.7
CSS0031993 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 6.5e-39 164.1 106 79.2
CSS0015899 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 8.5e-39 163.7 102 82.4
QL11p012061 Quercus lobata HOM05D003515 ORTHO05D004347 1.0e-36 156.8 96 82.3
Gohir.A05G245600 Gossypium hirsutum HOM05D003515 ORTHO05D004347 3.0e-36 155.2 96 79.2
Gohir.D05G247100 Gossypium hirsutum HOM05D003515 ORTHO05D004347 3.0e-36 155.2 96 79.2
COL.COLO4_16231 Corchorus olitorius HOM05D003515 ORTHO05D004347 5.1e-36 154.5 96 78.1
Gorai.009G257800 Gossypium raimondii HOM05D003515 ORTHO05D004347 6.7e-36 154.1 96 78.1
vmacro03558 Vaccinium macrocarpon HOM05D003515 ORTHO05D004347 8.8e-36 153.7 103 74.8
Thecc.02G003700 Theobroma cacao HOM05D003515 ORTHO05D004347 1.5e-35 152.9 96 78.1
Rhsim13G0134000 Rhododendron simsii HOM05D003515 ORTHO05D004347 2.0e-35 152.5 103 73.8
RhsimUnG0176900 Rhododendron simsii HOM05D003515 ORTHO05D004347 2.0e-35 152.5 103 73.8
Cfa001125 Carpinus fangiana HOM05D003515 ORTHO05D004347 2.6e-35 152.1 110 71.8
Atru.chr10.315 Acer truncatum HOM05D003515 ORTHO05D004347 4.4e-35 151.4 96 78.1
Ciclev10014398m.g Citrus clementina HOM05D003515 ORTHO05D004347 7.4e-35 150.6 107 72.9
Lj1C1149T14 Lonicera japonica HOM05D003515 ORTHO05D004347 7.4e-35 150.6 106 74.5
Haze_05267 Corylus avellana HOM05D003515 ORTHO05D004347 1.3e-34 149.8 96 78.1
Hma1.2p1_0088F.1_g045243 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 1.7e-34 149.4 103 74.8
Manes.03G074900 Manihot esculenta HOM05D003515 ORTHO05D004347 1.7e-34 149.4 85 87.1
Duzib132G1190 Durio zibethinus HOM05D003515 ORTHO05D004347 2.2e-34 149.1 96 76.0
TAR624G0550 Trochodendron aralioides HOM05D003515 ORTHO05D004347 4.8e-34 147.9 103 73.8
CiPaw.10G105500 Carya illinoinensis HOM05D003515 ORTHO05D004347 8.2e-34 147.1 96 76.0
MD10G1227200 Malus domestica HOM05D003515 ORTHO05D004347 1.1e-33 146.7 96 76.0
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 2.4e-33 145.6 107 70.1
FAN16G1075 Fragaria x ananassa HOM05D003515 ORTHO05D004347 7.0e-33 144.1 96 76.0
FAN21G1878 Fragaria x ananassa HOM05D003515 ORTHO05D004347 7.0e-33 144.1 96 76.0
Prupe.4G118000 Prunus persica HOM05D003515 ORTHO05D004347 7.0e-33 144.1 96 75.0
Eucgr.D00012 Eucalyptus grandis HOM05D003515 ORTHO05D004347 9.1e-33 143.7 96 72.9
Nn7g38343 Nelumbo nucifera HOM05D003515 ORTHO05D004347 9.1e-33 143.7 84 84.5
Sabra03G0110800 Salix brachista HOM05D003515 ORTHO05D004347 1.2e-32 143.3 104 70.2
FvH4_3g13010 Fragaria vesca HOM05D003515 ORTHO05D004347 1.5e-32 142.9 96 75.0
FAN11G3814 Fragaria x ananassa HOM05D003515 ORTHO05D004347 1.5e-32 142.9 96 75.0
Dinv07004 Davidia involucrata HOM05D003515 ORTHO05D004347 2.0e-32 142.5 79 88.6
HanXRQChr14g0439721 Helianthus annuus HOM05D003515 ORTHO05D004347 2.0e-32 142.5 88 79.5
RcHm_v2.0_Chr5g0021201 Rosa chinensis HOM05D003515 ORTHO05D004347 2.0e-32 142.5 96 74.0
Glyma.08G088900 Glycine max HOM05D003515 ORTHO05D004347 2.6e-32 142.1 96 75.0
CsaV3_6G052970 Cucumis sativus L. HOM05D003515 ORTHO05D004347 3.5e-32 141.7 106 67.0
CANSAT35G1862 Cannabis sativa HOM05D003515 ORTHO05D004347 4.5e-32 141.4 87 80.5
MELO3C007012.2 Cucumis melo HOM05D003515 ORTHO05D004347 4.5e-32 141.4 106 67.0
Medtr4g094755 Medicago truncatula HOM05D003515 ORTHO05D004347 4.5e-32 141.4 110 66.4
Lj4g0010619 Lotus japonicus HOM05D003515 ORTHO05D004347 5.9e-32 141.0 96 74.0
Oeu008987.4 Olea europaea HOM05D003515 ORTHO05D004347 5.9e-32 141.0 110 66.4
PGR004G1774 Punica granatum HOM05D003515 ORTHO05D004347 5.9e-32 141.0 91 76.9
arahy.Tifrunner.gnm1.ann1.NQ3I2Y Arachis hypogaea HOM05D003515 ORTHO05D004347 7.7e-32 140.6 96 72.9
Cc09_g05170 Coffea canephora HOM05D003515 ORTHO05D004347 7.7e-32 140.6 103 68.9
ECA238G0584 Erigeron canadensis HOM05D003515 ORTHO05D004347 7.7e-32 140.6 103 68.9
Ca_18232_v3 Cicer arietinum L. HOM05D003515 ORTHO05D004347 1.3e-31 139.8 106 67.0
Psat7g087560 Pisum sativum HOM05D003515 ORTHO05D004347 1.3e-31 139.8 96 72.9
Migut.M02011 Erythranthe guttata HOM05D003515 ORTHO05D004347 1.7e-31 139.4 103 66.0
Lalb_Chr13g0293411 Lupinus albus HOM05D003515 ORTHO05D004347 1.7e-31 139.4 106 66.0
Phvul.002G188000 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 1.7e-31 139.4 96 71.9
PSO541G6439 Papaver somniferum HOM05D003515 ORTHO05D004347 2.2e-31 139.0 103 65.0
ClCG01G025730 Citrullus lanatus HOM05D003515 ORTHO05D004347 2.9e-31 138.7 106 66.0
Nitab4.5_0003190g0020 Nicotiana tabacum HOM05D003515 ORTHO05D004347 2.9e-31 138.7 108 64.8
arahy.Tifrunner.gnm1.ann1.ZWBN17 Arachis hypogaea HOM05D003515 ORTHO05D004347 3.8e-31 138.3 96 71.9
DCAR_007777 Daucus carota HOM05D003515 ORTHO05D004347 3.8e-31 138.3 88 77.3
VMungo0251G3194 Vigna mungo HOM05D003515 ORTHO05D004347 3.8e-31 138.3 96 72.9
Nitab4.5_0000254g0140 Nicotiana tabacum HOM05D003515 ORTHO05D004347 5.0e-31 137.9 104 69.2
Carub.0008s0352 Capsella rubella HOM05D003515 ORTHO05D004347 6.5e-31 137.5 91 72.5
PGSC0003DMG401001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 6.5e-31 137.5 109 65.1
Solyc01g034150.4 Solanum lycopersicum HOM05D003515 ORTHO05D004347 8.5e-31 137.1 88 77.3
AL8G14790 Arabidopsis lyrata HOM05D003515 ORTHO05D004347 1.1e-30 136.7 91 72.5
TWI63G0015 Tripterygium wilfordii HOM05D003515 ORTHO05D004347 1.1e-30 136.7 91 74.7
Sopen01g017810 Solanum pennellii HOM05D003515 ORTHO05D004347 1.5e-30 136.3 88 77.3
GSVIVG01012151001 Vitis vinifera HOM05D003515 ORTHO05D004347 1.5e-30 136.3 103 67.0
Lsat_1_v5_gn_2_60141 Lactuca sativa HOM05D003515 ORTHO05D004347 1.9e-30 136.0 87 75.9
RcHm_v2.0_Chr5g0021111 Rosa chinensis HOM05D003515 ORTHO05D004347 1.9e-30 136.0 96 72.9
BcaNung07103 Brassica carinata HOM05D003515 ORTHO05D004347 2.5e-30 135.6 96 67.7
Os01g0757800 Oryza sativa ssp. japonica HOM05D003515 ORTHO05D004347 2.5e-30 135.6 103 65.0
AT5G44740 Arabidopsis thaliana HOM05D003515 ORTHO05D004347 3.2e-30 135.2 91 72.5
THA.LOC104812921 Tarenaya hassleriana HOM05D003515 ORTHO05D004347 5.5e-30 134.4 109 65.1
EL10Ac7g17242 Beta vulgaris HOM05D003515 ORTHO05D004347 7.2e-30 134.0 103 66.0
Sp2g09580 Schrenkiella parvula HOM05D003515 ORTHO05D004347 7.2e-30 134.0 91 71.4
Aqoxy2G04030 Aquilegia oxysepala HOM05D003515 ORTHO05D004347 9.4e-30 133.7 99 65.7
Peaxi162Scf00151g00110 Petunia axillaris HOM05D003515 ORTHO05D004347 9.4e-30 133.7 103 68.0
Sc05g0004760 Simmondsia chinensis HOM05D003515 ORTHO05D004347 9.4e-30 133.7 88 78.4
AUR62037879 Chenopodium quinoa HOM05D003515 ORTHO05D004347 1.2e-29 133.3 91 74.7
Thhalv10000807m.g Eutrema salsugineum HOM05D003515 ORTHO05D004347 1.2e-29 133.3 91 70.3
TPR.G22047 Trifolium pratense HOM05D003515 ORTHO05D004347 1.2e-29 133.3 90 72.2
CARHR178160 Cardamine hirsuta HOM05D003515 ORTHO05D004347 1.6e-29 132.9 91 71.4
Hma1.2p1_0088F.1_g045246 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 1.6e-29 132.9 85 80.0
Zm00001eb191750 Zea mays HOM05D003515 ORTHO05D004347 1.6e-29 132.9 102 65.7
Zm00001eb225590 Zea mays HOM05D003515 ORTHO05D004347 2.7e-29 132.1 102 65.7
CAN.G391.1 Capsicum annuum HOM05D003515 ORTHO05D004347 3.6e-29 131.7 103 66.0
AUR62040332 Chenopodium quinoa HOM05D003515 ORTHO05D004347 3.6e-29 131.7 99 67.7
Zm00001eb070690 Zea mays HOM05D003515 ORTHO05D004347 4.7e-29 131.3 102 64.7
Zm00001eb303570 Zea mays HOM05D003515 ORTHO05D004347 4.7e-29 131.3 102 64.7
Zm00001eb388450 Zea mays HOM05D003515 ORTHO05D004347 4.7e-29 131.3 102 64.7
Zm00001eb441390 Zea mays HOM05D003515 ORTHO05D004347 4.7e-29 131.3 102 64.7
Zm00001eb441960 Zea mays HOM05D003515 ORTHO05D004347 4.7e-29 131.3 102 64.7
SHI28055 Sapria himalayana HOM05D003515 ORTHO05D004347 6.1e-29 131.0 111 62.2
Sed0024374 Sechium edule HOM05D003515 ORTHO05D004347 8.0e-29 130.6 96 66.7
Zm00001eb440130 Zea mays HOM05D003515 ORTHO05D004347 1.4e-28 129.8 102 63.7
SEGI_02016 Sequoiadendron giganteum HOM05D003515 ORTHO05D004347 1.8e-28 129.4 91 67.0
ATR0763G272 Amborella trichopoda HOM05D003515 ORTHO05D004347 2.3e-28 129.0 103 65.0
Zm00001eb203100 Zea mays HOM05D003515 ORTHO05D004347 5.2e-28 127.9 102 62.7
unitig_748.g8071 Utricularia gibba HOM05D003515 ORTHO05D004347 8.8e-28 127.1 84 75.0
Zm00001eb152650 Zea mays HOM05D003515 ORTHO05D004347 1.1e-27 126.7 87 70.1
Zm00001eb409210 Zea mays HOM05D003515 ORTHO05D004347 1.1e-27 126.7 87 70.1
A06p46940 Brassica napus HOM05D003515 ORTHO05D004347 2.0e-27 125.9 95 66.3
BolC7t43303H Brassica oleracea HOM05D003515 ORTHO05D004347 2.0e-27 125.9 95 66.3
BraA06t27567Z Brassica rapa HOM05D003515 ORTHO05D004347 2.0e-27 125.9 101 64.4
HPP92_026459 Vanilla planifolia HOM05D003515 ORTHO05D004347 2.6e-27 125.6 87 70.1
C07p27710 Brassica napus HOM05D003515 ORTHO05D004347 3.3e-27 125.2 95 66.3
Aa31LG9G8430 Aethionema arabicum HOM05D003515 ORTHO05D004347 1.7e-26 122.9 91 69.2
HPP92_014201 Vanilla planifolia HOM05D003515 ORTHO05D004347 3.1e-25 118.6 83 69.9
Mapoly0100s0031 Marchantia polymorpha HOM05D003515 ORTHO05D004347 5.3e-25 117.9 90 63.3
AagrBONN_evm.TU.Sc2ySwM_228.4437 Anthoceros agrestis HOM05D003515 ORTHO05D004347 7.0e-25 117.5 96 58.3
SGA_v2.0_scaffold298G47708 Striga asiatica HOM05D003515 ORTHO05D004347 2.6e-24 115.5 113 56.6
SMO118G0165 Selaginella moellendorffii HOM05D003515 ORTHO05D004347 1.5e-22 109.8 88 60.2
CSS0015745 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.2e-22 108.6 80 67.5
Pp3c8_17250 Physcomitrium patens HOM05D003515 ORTHO05D004347 1.4e-20 103.2 104 50.0
BcaNung06821 Brassica carinata HOM05D003515 ORTHO05D004347 3.4e-19 98.6 73 69.9
Potri.003G152600 Populus trichocarpa HOM05D003515 ORTHO05D004347 4.4e-19 98.2 54 88.9
CBR_g30567 Chara braunii HOM05D003515 ORTHO05D004347 4.8e-18 94.7 67 65.7
CSS0033549 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 4.1e-17 91.7 98 55.1
RcHm_v2.0_Chr4g0406921 Rosa chinensis HOM05D003515 ORTHO05D004347 2.2e-15 85.9 73 60.3
Zm00001eb031780 Zea mays HOM05D003515 ORTHO05D004347 2.2e-15 85.9 68 60.3
Zm00001eb277800 Zea mays HOM05D003515 ORTHO05D004347 1.1e-14 83.6 68 58.8
CDE06G2844 Ceratophyllum demersum HOM05D003515 ORTHO05D004363 3.0e-12 75.5 56 64.3
CDE06G0434 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 8.8e-12 73.9 50 68.0
AagrBONN_evm.TU.Sc2ySwM_344.1043 Anthoceros agrestis HOM05D003515 ORTHO05D004347 2.8e-10 68.9 69 46.4
Cre12.g524150 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 3.7e-10 68.6 72 48.6
PRCOL_00006902 Prasinoderma coloniale HOM05D003515 ORTHO05D004347 8.3e-10 67.4 69 44.9
MCO03G362 Micromonas commoda HOM05D003515 ORTHO05D004347 3.1e-09 65.5 75 46.7
AagrBONN_evm.TU.Sc2ySwM_117.2476 Anthoceros agrestis HOM05D003515 ORTHO05D004347 4.1e-09 65.1 84 41.7
SMO367G0229 Selaginella moellendorffii HOM05D003515 ORTHO05D004347 4.1e-09 65.1 69 44.9
Mapoly0044s0119 Marchantia polymorpha HOM05D003515 ORTHO05D004347 9.1e-09 63.9 70 42.9
Pp3c14_23660 Physcomitrium patens HOM05D003515 ORTHO05D004347 9.1e-09 63.9 69 43.5
Mapoly0226s0007 Marchantia polymorpha HOM05D003515 ORTHO05D004347 2.7e-08 62.4 69 40.6
MSTRG.2876 Avicennia marina HOM05D003515 ORTHO05D004347 3.5e-08 62.0 46 67.4
CBR_g20120 Chara braunii HOM05D003515 ORTHO05D004347 1.0e-07 60.5 95 36.8
MCO16G582 Micromonas commoda HOM05D003515 ORTHO05D004347 3.8e-07 58.5 69 44.9
Cre07.g338602 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 5.0e-07 58.2 69 43.5
Cre03.g148050 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 1.5e-06 56.6 69 40.6
vmacro19533 Vaccinium macrocarpon HOM05D002857 ORTHO05D007919 1.9e-06 56.2 82 42.7
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 3.3e-06 55.5 62 45.2
CDE04G2933 Ceratophyllum demersum HOM05D002857 ORTHO05D007919 5.5e-06 54.7 82 41.5
Gohir.A03G182500 Gossypium hirsutum HOM05D002857 ORTHO05D007919 9.5e-06 53.9 65 44.6
Gohir.D02G204100 Gossypium hirsutum HOM05D002857 ORTHO05D007919 9.5e-06 53.9 82 40.2
Manes.10G081500 Manihot esculenta HOM05D002857 ORTHO05D007919 9.5e-06 53.9 65 43.1


User provided reference genes

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