Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 3.2e-62 241.5 116 100.0
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 9.3e-62 240.0 116 99.1
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 6.1e-53 210.7 112 87.5
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 3.9e-52 208.0 111 85.6
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.5e-51 206.1 112 83.0
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 1.5e-51 206.1 112 83.9
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.9e-51 205.7 112 83.9
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 1.9e-51 205.7 112 83.0
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 2.5e-51 205.3 112 83.9
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 3.3e-51 204.9 112 83.9
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 5.7e-51 204.1 111 84.7
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 1.3e-50 203.0 113 82.3
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 1.6e-50 202.6 113 82.3
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 2.2e-50 202.2 110 84.5
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 3.7e-50 201.4 112 82.1
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 3.7e-50 201.4 112 82.1
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 3.7e-50 201.4 112 81.2
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 4.8e-50 201.1 112 83.0
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 4.8e-50 201.1 113 80.5
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 4.8e-50 201.1 111 82.0
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 1.4e-49 199.5 112 82.1
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 1.4e-49 199.5 112 80.4
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 1.4e-49 199.5 112 81.2
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 1.8e-49 199.1 112 79.5
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 2.4e-49 198.7 113 78.8
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.1e-49 198.4 112 79.5
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 3.1e-49 198.4 112 81.2
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 4.1e-49 198.0 113 77.9
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.3e-49 197.6 112 79.5
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 5.3e-49 197.6 111 82.0
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 6.9e-49 197.2 113 77.9
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 6.9e-49 197.2 113 78.8
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 6.9e-49 197.2 112 79.5
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 6.9e-49 197.2 112 79.5
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.0e-49 196.8 112 78.6
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 9.0e-49 196.8 112 78.6
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 9.0e-49 196.8 112 80.4
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 9.0e-49 196.8 111 80.2
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 1.2e-48 196.4 113 77.9
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 1.2e-48 196.4 113 77.9
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 1.2e-48 196.4 113 77.9
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 1.2e-48 196.4 113 77.9
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 1.2e-48 196.4 112 79.5
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.5e-48 196.1 113 77.9
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.5e-48 196.1 113 77.9
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 2.0e-48 195.7 112 77.7
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 2.0e-48 195.7 113 79.6
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 2.0e-48 195.7 113 77.9
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 2.0e-48 195.7 112 80.4
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 2.6e-48 195.3 112 79.5
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 2.6e-48 195.3 113 77.9
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.6e-48 195.3 112 79.5
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.6e-48 195.3 113 78.8
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 2.6e-48 195.3 113 77.9
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 3.4e-48 194.9 113 77.0
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 3.4e-48 194.9 112 79.5
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 4.5e-48 194.5 113 77.0
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 4.5e-48 194.5 113 77.0
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 4.5e-48 194.5 109 79.8
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 4.5e-48 194.5 113 77.0
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 4.5e-48 194.5 113 77.0
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 4.5e-48 194.5 112 76.8
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 4.5e-48 194.5 112 76.8
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 5.9e-48 194.1 113 78.8
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 5.9e-48 194.1 113 77.9
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 76.1
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 76.1
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 76.1
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 76.1
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 76.1
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 7.7e-48 193.7 111 80.2
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 7.7e-48 193.7 112 78.6
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 1.0e-47 193.4 113 77.9
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 1.0e-47 193.4 111 79.3
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 1.0e-47 193.4 113 76.1
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.3e-47 193.0 113 77.0
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 1.7e-47 192.6 113 78.8
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 1.7e-47 192.6 104 84.6
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.7e-47 192.6 111 80.2
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.2e-47 192.2 111 77.5
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 2.9e-47 191.8 135 68.1
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 5.0e-47 191.0 113 76.1
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 5.0e-47 191.0 113 76.1
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 5.0e-47 191.0 116 78.4
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 6.5e-47 190.7 113 77.9
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 6.5e-47 190.7 108 79.6
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 8.5e-47 190.3 112 79.5
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.9e-46 189.1 111 78.4
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 2.5e-46 188.7 113 75.2
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.5e-46 188.7 113 76.1
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 3.2e-46 188.3 112 75.9
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 4.2e-46 188.0 113 75.2
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 7.2e-46 187.2 112 72.3
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 7.2e-46 187.2 113 75.2
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 1.2e-45 186.4 111 77.5
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.2e-45 186.4 112 72.3
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 1.6e-45 186.0 112 74.1
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 4.6e-45 184.5 111 76.6
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 7.9e-45 183.7 99 84.8
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 1.4e-44 183.0 104 80.8
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 3.0e-44 181.8 111 74.8
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 8.8e-44 180.3 113 72.6
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 2.0e-43 179.1 113 73.5
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 7.4e-43 177.2 96 85.4
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 9.7e-43 176.8 106 72.6
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 9.7e-43 176.8 148 58.8
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 2.2e-42 175.6 107 72.9
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 3.7e-42 174.9 101 77.2
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 6.3e-42 174.1 103 75.7
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 8.2e-42 173.7 96 86.5
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.4e-41 172.9 104 74.0
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 1.8e-41 172.6 105 73.3
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 3.1e-41 171.8 104 73.1
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 3.1e-41 171.8 113 70.8
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.5e-40 169.5 98 76.5
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 1.5e-40 169.5 102 75.5
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 4.5e-40 167.9 101 74.3
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 2.2e-39 165.6 121 66.1
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 2.2e-39 165.6 176 51.7
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.3e-35 151.8 112 67.0
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 1.7e-34 149.4 88 79.5
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 6.3e-34 147.5 115 64.3
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 3.5e-32 141.7 112 56.2
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 5.9e-32 141.0 113 54.0
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 5.9e-32 141.0 113 54.9
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 3.8e-31 138.3 82 79.3
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 4.7e-29 131.3 113 56.6
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 8.8e-28 127.1 108 52.8
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-27 124.0 113 50.4
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 2.6e-24 115.5 58 84.5
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 5.0e-23 111.3 98 56.1
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 6.5e-23 110.9 57 80.7
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 8.5e-23 110.5 99 52.5
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 1.5e-22 109.8 58 75.9
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 7.2e-22 107.5 95 53.7
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.7e-21 105.5 58 75.9
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.0e-20 103.6 81 63.0
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 2.6e-19 99.0 113 47.8
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 1.7e-18 96.3 141 41.8
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.1e-17 93.6 51 90.2
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 1.1e-17 93.6 99 44.4
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 2.4e-17 92.4 53 86.8
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 9.1e-17 90.5 80 57.5
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 5.5e-14 81.3 55 65.5
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 2.3e-12 75.9 46 69.6
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 4.4e-11 71.6 58 63.8
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 2.4e-09 65.9 99 36.4
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 1.9e-06 56.2 82 42.7


User provided reference genes

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