Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 6.3e-233 810.4 425 100.0
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.7e-182 642.9 417 76.7
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 3.3e-181 638.6 438 74.2
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 6.9e-171 604.4 460 67.6
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.1e-163 580.5 395 71.1
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 1.1e-163 580.5 379 75.2
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 4.0e-163 578.6 361 75.6
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 2.0e-162 576.2 381 72.7
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 4.9e-161 571.6 398 69.8
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 6.5e-161 571.2 399 69.9
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 6.5e-161 571.2 399 69.4
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 1.4e-160 570.1 402 69.7
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 9.3e-160 567.4 398 71.9
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 9.3e-160 567.4 400 69.5
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 4.6e-159 565.1 399 68.9
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 1.3e-158 563.5 400 68.5
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.8e-158 563.1 399 69.7
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 6.7e-158 561.2 417 69.3
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 4.3e-157 558.5 400 67.5
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 7.4e-157 557.8 381 70.9
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 1.6e-156 556.6 400 69.0
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 2.2e-156 556.2 401 68.1
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 2.2e-156 556.2 399 68.2
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 2.8e-156 555.8 400 68.2
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 3.7e-156 555.4 400 68.8
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 3.7e-156 555.4 399 68.2
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 4.8e-156 555.1 375 71.5
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 6.3e-156 554.7 397 68.5
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 8.2e-156 554.3 423 68.3
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.4e-155 553.5 419 65.4
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 3.1e-155 552.4 399 67.2
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 9.0e-155 550.8 400 68.8
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 9.0e-155 550.8 360 73.6
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 9.0e-155 550.8 413 65.6
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.2e-154 550.4 420 64.8
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.0e-154 549.7 400 68.8
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 2.6e-154 549.3 400 68.0
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 4.5e-154 548.5 399 66.4
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 8.5e-153 544.3 359 71.0
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 1.1e-152 543.9 399 65.7
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 1.1e-152 543.9 400 67.2
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 1.4e-152 543.5 381 68.5
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 2.5e-152 542.7 399 66.2
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 2.5e-152 542.7 399 66.9
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 4.2e-152 542.0 398 68.8
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 7.2e-152 541.2 400 67.2
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 9.4e-152 540.8 341 74.2
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 9.4e-152 540.8 446 61.7
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 9.4e-152 540.8 446 61.7
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 9.4e-152 540.8 399 66.7
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 1.2e-151 540.4 436 63.3
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 2.7e-151 539.3 399 66.7
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 6.1e-151 538.1 400 66.2
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.0e-150 537.3 399 65.7
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 3.0e-150 535.8 420 66.4
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 3.9e-150 535.4 399 66.2
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 6.7e-150 534.6 399 66.7
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 6.7e-150 534.6 322 80.1
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 8.8e-150 534.3 395 65.1
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 4.3e-149 531.9 399 66.2
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 4.8e-148 528.5 380 68.2
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 2.4e-147 526.2 359 69.1
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 2.4e-147 526.2 360 71.1
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 5.3e-147 525.0 399 64.9
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 6.9e-147 524.6 417 62.1
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 6.9e-147 524.6 380 67.9
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 3.4e-146 522.3 403 63.8
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 4.5e-146 521.9 364 69.8
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 7.7e-146 521.2 399 64.7
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 7.7e-146 521.2 399 64.7
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 1.0e-145 520.8 419 61.6
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 2.2e-145 519.6 361 69.0
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 2.9e-145 519.2 366 68.0
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 8.5e-145 517.7 340 72.9
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 1.1e-144 517.3 350 70.9
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 1.4e-144 516.9 399 64.4
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.4e-144 516.9 384 67.2
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 2.5e-144 516.2 399 62.9
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 3.2e-144 515.8 413 64.6
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 7.2e-144 514.6 341 71.3
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 2.1e-143 513.1 400 63.0
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 1.0e-142 510.8 356 69.1
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 1.4e-142 510.4 420 62.9
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 3.9e-142 508.8 356 66.6
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 4.4e-141 505.4 377 66.3
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 9.7e-141 504.2 377 66.3
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 2.8e-140 502.7 402 61.2
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 2.8e-140 502.7 362 66.0
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 4.5e-138 495.4 358 65.4
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 3.3e-133 479.2 368 61.4
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 4.4e-133 478.8 368 62.5
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 1.7e-132 476.9 368 61.7
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 2.2e-132 476.5 368 61.7
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 1.1e-131 474.2 368 61.4
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 1.8e-131 473.4 399 59.6
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 3.1e-131 472.6 399 59.4
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 5.3e-131 471.9 413 60.5
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 7.0e-131 471.5 368 61.1
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 7.7e-130 468.0 399 58.6
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 2.9e-129 466.1 354 64.4
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 2.9e-129 466.1 399 59.9
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 8.5e-129 464.5 370 62.2
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 1.9e-128 463.4 395 57.7
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 1.9e-128 463.4 367 59.9
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 3.2e-128 462.6 369 60.2
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 1.2e-127 460.7 359 61.8
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.2e-127 460.7 399 60.4
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 2.1e-127 459.9 368 59.5
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 2.1e-127 459.9 368 59.5
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 4.7e-127 458.8 399 56.6
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 4.7e-127 458.8 399 59.6
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 3.0e-126 456.1 362 59.9
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 1.2e-125 454.1 324 68.5
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 8.2e-124 448.0 362 58.8
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 4.2e-120 435.6 364 58.2
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 2.1e-119 433.3 292 70.9
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 2.6e-117 426.4 367 56.9
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 7.5e-117 424.9 363 59.0
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 5.0e-113 412.1 292 67.1
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.5e-112 410.6 345 60.6
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.5e-112 409.8 433 51.7
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 3.4e-109 399.4 290 64.8
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 7.5e-109 398.3 368 51.6
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 1.1e-104 384.4 323 57.3
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 4.7e-103 379.0 293 62.1
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 8.9e-102 374.8 295 62.7
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 7.8e-98 361.7 400 49.8
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 8.1e-87 325.1 292 56.2
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 2.3e-86 323.6 358 46.6
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 5.2e-86 322.4 377 44.8
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 7.5e-85 318.5 296 54.1
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 9.9e-85 318.2 389 44.0
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 1.1e-83 314.7 475 41.9
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 4.3e-80 302.8 414 45.2
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 6.0e-74 282.3 181 70.7
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 3.9e-73 279.6 399 45.6
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.7e-58 230.3 230 53.0
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 7.9e-58 228.8 303 41.6
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 8.7e-57 225.3 185 64.3
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 1.2e-53 214.9 358 38.3
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 1.2e-53 214.9 358 38.3
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 4.9e-52 209.5 127 75.6
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 1.6e-47 194.5 372 36.3
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 3.7e-47 193.4 356 35.4
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.2e-47 192.6 231 47.6
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.9e-36 157.1 300 34.3
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 5.0e-28 129.8 385 26.2
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.3e-25 120.9 106 56.6
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 6.7e-25 119.4 124 50.8
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 1.7e-23 114.8 390 26.9
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 1.5e-19 101.7 250 28.8
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 3.2e-19 100.5 71 70.4
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 3.0e-17 94.0 86 57.0
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 3.0e-17 94.0 86 57.0
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.0e-16 91.3 53 79.2
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 4.8e-15 86.7 75 57.3
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 2.2e-07 61.2 37 73.0


User provided reference genes

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