Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 1.5e-133 479.6 248 100.0
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 8.3e-100 367.5 229 80.8
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 1.4e-99 366.7 231 79.2
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 1.4e-99 366.7 230 80.4
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 2.0e-98 362.8 231 78.8
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 4.5e-98 361.7 246 76.0
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 2.5e-96 355.9 248 75.8
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 3.3e-96 355.5 224 79.0
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 3.6e-95 352.1 232 75.4
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 6.8e-94 347.8 245 76.3
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 6.3e-92 341.3 229 76.4
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 5.4e-91 338.2 220 78.2
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 2.0e-90 336.3 217 78.8
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 3.5e-90 335.5 246 70.7
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.0e-89 334.0 229 74.2
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 1.3e-89 333.6 219 78.1
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 6.6e-89 331.3 220 78.6
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 6.6e-89 331.3 237 72.2
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 1.5e-88 330.1 232 75.0
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 1.5e-88 330.1 230 73.0
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 2.5e-88 329.3 229 73.4
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 4.3e-88 328.6 217 72.8
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 7.3e-88 327.8 222 74.3
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 9.5e-88 327.4 218 74.8
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 6.1e-87 324.7 355 54.6
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 1.4e-86 323.6 217 72.8
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.1e-86 322.4 222 73.0
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 1.5e-85 320.1 223 72.2
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 3.4e-85 318.9 217 73.7
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 4.4e-85 318.5 234 70.9
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 1.7e-84 316.6 205 78.5
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 2.9e-84 315.8 220 72.3
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 2.9e-84 315.8 222 73.0
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 2.9e-84 315.8 222 73.0
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 4.9e-84 315.1 228 72.4
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 6.4e-84 314.7 222 73.0
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 6.4e-84 314.7 252 67.5
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 1.9e-83 313.2 248 67.7
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 2.4e-83 312.8 232 69.8
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 3.2e-83 312.4 221 71.9
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 3.2e-83 312.4 220 69.5
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 4.1e-83 312.0 231 69.7
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 5.4e-83 311.6 222 73.0
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 7.0e-83 311.2 252 65.9
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 9.2e-83 310.8 239 68.2
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 1.2e-82 310.5 263 67.7
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 1.6e-82 310.1 226 69.5
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.0e-82 309.7 227 70.0
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 3.5e-82 308.9 222 70.3
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 7.8e-82 307.8 222 73.0
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 1.0e-81 307.4 230 69.6
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 1.7e-81 306.6 223 72.2
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 1.7e-81 306.6 222 73.4
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 2.3e-81 306.2 228 70.2
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 6.6e-81 304.7 221 70.6
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 1.5e-80 303.5 236 65.7
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 2.5e-80 302.8 219 71.2
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 9.5e-80 300.8 222 68.5
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 9.5e-80 300.8 234 69.2
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 2.1e-79 299.7 219 70.8
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 3.6e-79 298.9 228 68.9
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 4.7e-79 298.5 229 66.4
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 6.2e-79 298.1 217 68.2
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 1.4e-78 297.0 226 69.5
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 1.8e-78 296.6 222 69.8
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 1.8e-78 296.6 228 66.7
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 1.8e-78 296.6 228 68.4
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 2.3e-78 296.2 232 67.2
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 2.3e-78 296.2 231 65.8
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 1.2e-77 293.9 228 68.4
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 2.0e-77 293.1 228 68.4
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 7.5e-77 291.2 229 65.9
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 9.8e-77 290.8 233 66.1
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 1.7e-76 290.0 218 65.1
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 2.2e-76 289.7 199 71.9
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 3.7e-76 288.9 232 66.8
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 1.1e-75 287.3 233 65.7
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 3.2e-75 285.8 232 66.4
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 4.1e-75 285.4 231 68.0
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 5.4e-75 285.0 218 64.7
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 3.9e-73 278.9 216 63.4
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 3.9e-73 278.9 235 63.0
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.1e-73 278.5 211 69.7
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 6.6e-73 278.1 207 68.6
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 6.6e-73 278.1 207 68.6
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 1.5e-72 276.9 238 60.9
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.5e-72 276.2 207 68.1
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 2.5e-72 276.2 291 55.3
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 3.3e-72 275.8 239 62.8
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 7.3e-72 274.6 252 60.7
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 1.2e-71 273.9 228 62.3
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 3.1e-70 269.2 217 65.0
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 3.1e-70 269.2 220 64.5
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 5.2e-70 268.5 214 65.0
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 6.8e-70 268.1 225 64.9
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 1.2e-69 267.3 232 63.8
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 9.9e-69 264.2 230 62.6
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 9.9e-69 264.2 214 64.0
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 1.3e-68 263.8 219 61.6
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 2.9e-68 262.7 212 63.7
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 2.9e-68 262.7 202 69.8
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 4.6e-66 255.4 176 71.6
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 1.0e-65 254.2 219 60.7
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 1.3e-65 253.8 219 65.3
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 3.9e-65 252.3 218 59.6
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 3.9e-65 252.3 219 60.7
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 1.5e-64 250.4 224 62.9
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 3.3e-64 249.2 186 70.4
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 5.6e-64 248.4 258 56.2
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.2e-63 247.3 229 55.9
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 2.8e-63 246.1 230 56.5
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 1.4e-62 243.8 189 69.8
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 1.4e-62 243.8 170 74.1
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 1.4e-62 243.8 219 58.0
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 2.0e-61 240.0 214 61.7
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 2.6e-61 239.6 218 58.7
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 3.4e-61 239.2 172 72.7
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 7.1e-59 231.5 232 54.7
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 3.0e-57 226.1 145 77.2
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 1.2e-55 220.7 175 66.9
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 6.2e-55 218.4 198 55.6
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 1.4e-54 217.2 165 69.1
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.2e-53 214.2 183 66.1
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 1.2e-53 214.2 208 56.7
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 3.4e-53 212.6 177 63.3
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 7.6e-53 211.5 177 62.7
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 7.6e-53 211.5 177 62.7
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 3.5e-50 202.6 207 55.1
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 4.6e-50 202.2 129 74.4
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 4.3e-48 195.7 132 74.2
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 2.1e-47 193.4 366 36.9
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 2.4e-46 189.9 194 57.7
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.0e-45 186.8 206 54.9
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 6.4e-44 181.8 173 54.3
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 1.1e-40 171.0 206 48.5
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 7.6e-37 158.3 195 52.8
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 4.8e-23 112.5 113 59.3
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 1.5e-21 107.5 257 37.0
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 1.7e-20 104.0 93 62.4
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 4.2e-19 99.4 81 60.5
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 7.2e-19 98.6 258 32.2
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 3.0e-17 93.2 168 39.9
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 2.0e-16 90.5 96 53.1
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 1.7e-15 87.4 63 68.3
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 6.3e-15 85.5 221 33.0
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 6.3e-15 85.5 111 45.0
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 6.9e-14 82.0 269 27.9
SEGI_07437 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 2.0e-13 80.5 116 45.7
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 7.7e-13 78.6 57 70.2
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.7e-12 77.4 101 51.5
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 2.9e-12 76.6 45 80.0
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 6.5e-12 75.5 164 34.1
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 1.9e-11 73.9 89 52.8
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 6.1e-10 68.9 44 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2582 Anthoceros agrestis HOM05D004812 ORTHO05D005721 9.1e-06 55.1 136 38.2


User provided reference genes

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