Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032815 Camellia sinensis var. sinensis HOM05D003218 ORTHO05D003702 2.2e-54 215.3 105 100.0
vmacro14557 Vaccinium macrocarpon HOM05D003218 ORTHO05D003702 5.5e-13 77.8 41 87.8
Dinv34286 Davidia involucrata HOM05D003218 ORTHO05D003702 9.5e-13 77.0 42 85.7
Hma1.2p1_0615F.1_g189680 Hydrangea macrophylla HOM05D003218 ORTHO05D003702 2.1e-12 75.9 42 85.7
Dinv17046 Davidia involucrata HOM05D003218 ORTHO05D003702 4.7e-12 74.7 42 83.3
Dinv42990 Davidia involucrata HOM05D003218 ORTHO05D003702 4.7e-12 74.7 42 83.3
Dinv43108 Davidia involucrata HOM05D003218 ORTHO05D003702 4.7e-12 74.7 42 83.3
CSS0023241 Camellia sinensis var. sinensis HOM05D003218 ORTHO05D003702 6.1e-12 74.3 42 81.0
Rhsim01G0231600 Rhododendron simsii HOM05D003218 ORTHO05D003702 4.0e-11 71.6 42 83.3
Actinidia34426 Actinidia chinensis HOM05D003218 ORTHO05D003702 5.2e-11 71.2 42 78.6
Lj1A146G69 Lonicera japonica HOM05D003218 ORTHO05D003702 6.8e-11 70.9 42 76.2
Sed0005039 Sechium edule HOM05D003218 ORTHO05D003702 8.8e-11 70.5 42 76.2
Cc01_g13340 Coffea canephora HOM05D003218 ORTHO05D003702 1.2e-10 70.1 42 73.8
TWI75G0827 Tripterygium wilfordii HOM05D003218 ORTHO05D003702 1.2e-10 70.1 46 69.6
Duzib150G1564 Durio zibethinus HOM05D003218 ORTHO05D003702 1.5e-10 69.7 37 86.5
Manes.02G128700 Manihot esculenta HOM05D003218 ORTHO05D003702 1.5e-10 69.7 41 80.5
QL01p029248 Quercus lobata HOM05D003218 ORTHO05D003702 1.5e-10 69.7 42 78.6
ClCG02G019890 Citrullus lanatus HOM05D003218 ORTHO05D003702 2.0e-10 69.3 42 76.2
MELO3C025890.2 Cucumis melo HOM05D003218 ORTHO05D003702 2.0e-10 69.3 42 76.2
CsaV3_6G016600 Cucumis sativus L. HOM05D003218 ORTHO05D003702 2.0e-10 69.3 42 76.2
Gohir.A07G100400 Gossypium hirsutum HOM05D003218 ORTHO05D003702 2.6e-10 68.9 38 89.5
Gohir.D07G104600 Gossypium hirsutum HOM05D003218 ORTHO05D003702 2.6e-10 68.9 38 89.5
Gorai.001G112500 Gossypium raimondii HOM05D003218 ORTHO05D003702 2.6e-10 68.9 38 89.5
Manes.01G169400 Manihot esculenta HOM05D003218 ORTHO05D003702 2.6e-10 68.9 37 86.5
Cpa.g.sc81.98 Carica papaya HOM05D003218 ORTHO05D003702 3.4e-10 68.6 42 71.4
Peaxi162Scf00481g00330 Petunia axillaris HOM05D003218 ORTHO05D003702 4.4e-10 68.2 41 75.6
Sed0005276 Sechium edule HOM05D003218 ORTHO05D003702 5.7e-10 67.8 42 73.8
COL.COLO4_18577 Corchorus olitorius HOM05D003218 ORTHO05D003702 9.8e-10 67.0 68 55.9
Gohir.A05G093100 Gossypium hirsutum HOM05D003218 ORTHO05D003702 9.8e-10 67.0 38 78.9
Gorai.009G096500 Gossypium raimondii HOM05D003218 ORTHO05D003702 9.8e-10 67.0 38 78.9
Prupe.6G070500 Prunus persica HOM05D003218 ORTHO05D003702 1.7e-09 66.2 42 73.8
Rhsim13G0077100 Rhododendron simsii HOM05D003218 ORTHO05D003702 1.7e-09 66.2 42 76.2
CAN.G394.76 Capsicum annuum HOM05D003218 ORTHO05D003702 2.2e-09 65.9 39 76.9
MD03G1086200 Malus domestica HOM05D003218 ORTHO05D003702 2.2e-09 65.9 42 69.0
GSVIVG01024907001 Vitis vinifera HOM05D003218 ORTHO05D003702 2.2e-09 65.9 42 73.8
CiPaw.14G065100 Carya illinoinensis HOM05D003218 ORTHO05D003702 2.8e-09 65.5 42 73.8
Duzib168G2307 Durio zibethinus HOM05D003218 ORTHO05D003702 2.8e-09 65.5 39 82.1
vmacro03029 Vaccinium macrocarpon HOM05D003218 ORTHO05D003702 2.8e-09 65.5 38 76.3
Lj3g0009557 Lotus japonicus HOM05D003218 ORTHO05D003702 3.7e-09 65.1 42 71.4
Oeu033634.1 Olea europaea HOM05D003218 ORTHO05D003702 3.7e-09 65.1 42 73.8
Atru.chr3.3992 Acer truncatum HOM05D003218 ORTHO05D003702 4.9e-09 64.7 44 75.0
MBI14_g11605_MAGBIO Magnolia biondii HOM05D003218 ORTHO05D003702 4.9e-09 64.7 42 69.0
VMungo1080G0815 Vigna mungo HOM05D003218 ORTHO05D003702 4.9e-09 64.7 42 71.4
Ciclev10028561m.g Citrus clementina HOM05D003218 ORTHO05D003702 6.3e-09 64.3 43 72.1
MD11G1094800 Malus domestica HOM05D003218 ORTHO05D003702 8.3e-09 63.9 42 69.0
Hund04922 Selenicereus undatus HOM05D003218 ORTHO05D003702 8.3e-09 63.9 42 73.8
Thecc.09G315600 Theobroma cacao HOM05D003218 ORTHO05D003702 8.3e-09 63.9 37 83.8
Glyma.13G339000 Glycine max HOM05D003218 ORTHO05D003702 1.4e-08 63.2 42 69.0
Haze_24169 Corylus avellana HOM05D003218 ORTHO05D003702 1.8e-08 62.8 42 73.8
Haze_24174 Corylus avellana HOM05D003218 ORTHO05D003702 1.8e-08 62.8 42 73.8
Hma1.2p1_1664F.1_g296410 Hydrangea macrophylla HOM05D003218 ORTHO05D003702 1.8e-08 62.8 38 73.7
Lsat_1_v5_gn_9_24801 Lactuca sativa HOM05D003218 ORTHO05D003702 2.4e-08 62.4 43 58.1
Phvul.L008243 Phaseolus vulgaris HOM05D003218 ORTHO05D003702 2.4e-08 62.4 42 69.0
Potri.009G036700 Populus trichocarpa HOM05D003218 ORTHO05D003702 2.4e-08 62.4 42 76.2
Solyc06g076390.3 Solanum lycopersicum HOM05D003218 ORTHO05D003702 2.4e-08 62.4 41 68.3
Sopen06g032800 Solanum pennellii HOM05D003218 ORTHO05D003702 2.4e-08 62.4 41 68.3
Lalb_Chr24g0397181 Lupinus albus HOM05D003218 ORTHO05D003702 3.1e-08 62.0 42 69.0
Eucgr.J02029 Eucalyptus grandis HOM05D003218 ORTHO05D003702 4.1e-08 61.6 42 69.0
Lalb_Chr03g0026451 Lupinus albus HOM05D003218 ORTHO05D003702 4.1e-08 61.6 42 66.7
FvH4_3g36940 Fragaria vesca HOM05D003218 ORTHO05D003702 5.4e-08 61.2 42 66.7
FAN11G1275 Fragaria x ananassa HOM05D003218 ORTHO05D003702 5.4e-08 61.2 42 66.7
FAN16G2405 Fragaria x ananassa HOM05D003218 ORTHO05D003702 5.4e-08 61.2 42 66.7
FAN21G3821 Fragaria x ananassa HOM05D003218 ORTHO05D003702 5.4e-08 61.2 42 66.7
CiPaw.13G089300 Carya illinoinensis HOM05D003218 ORTHO05D003702 9.2e-08 60.5 42 66.7
AUR62001737 Chenopodium quinoa HOM05D003218 ORTHO05D003702 9.2e-08 60.5 42 64.3
FAN25G2385 Fragaria x ananassa HOM05D003218 ORTHO05D003702 9.2e-08 60.5 42 66.7
Lalb_Chr01g0003481 Lupinus albus HOM05D003218 ORTHO05D003702 9.2e-08 60.5 42 64.3
Medtr2g097740 Medicago truncatula HOM05D003218 ORTHO05D003702 9.2e-08 60.5 42 64.3
Sabra16G0148300 Salix brachista HOM05D003218 ORTHO05D003702 9.2e-08 60.5 42 73.8
RcHm_v2.0_Chr5g0066351 Rosa chinensis HOM05D003218 ORTHO05D003702 1.2e-07 60.1 42 66.7
TAR369G0400 Trochodendron aralioides HOM05D003218 ORTHO05D003702 1.2e-07 60.1 38 68.4
EL10Ac7g16069 Beta vulgaris HOM05D003218 ORTHO05D003702 1.6e-07 59.7 42 64.3
ECA247G2536 Erigeron canadensis HOM05D003218 ORTHO05D003702 1.6e-07 59.7 42 64.3
Glyma.12G059800 Glycine max HOM05D003218 ORTHO05D003702 1.6e-07 59.7 42 71.4
Lj3g0024298 Lotus japonicus HOM05D003218 ORTHO05D003702 1.6e-07 59.7 42 64.3
VMungo1080G1854 Vigna mungo HOM05D003218 ORTHO05D003702 1.6e-07 59.7 42 66.7
BcaB02g06738 Brassica carinata HOM05D003218 ORTHO05D003702 2.0e-07 59.3 36 75.0
BcaC05g24697 Brassica carinata HOM05D003218 ORTHO05D003702 2.0e-07 59.3 36 75.0
Nitab4.5_0000463g0110 Nicotiana tabacum HOM05D003218 ORTHO05D003702 2.0e-07 59.3 32 81.2
TAR623G0488 Trochodendron aralioides HOM05D003218 ORTHO05D003702 2.0e-07 59.3 41 70.7
Aqoxy1G00871 Aquilegia oxysepala HOM05D003218 ORTHO05D003702 2.7e-07 58.9 41 65.9
AUR62020038 Chenopodium quinoa HOM05D003218 ORTHO05D002695 2.7e-07 58.9 42 61.9
Sc21g0006020 Simmondsia chinensis HOM05D003218 ORTHO05D003702 2.7e-07 58.9 39 66.7
CANSAT54G1307 Cannabis sativa HOM05D003218 ORTHO05D003702 3.5e-07 58.5 38 71.1
PGR102G0701 Punica granatum HOM05D003218 ORTHO05D003702 3.5e-07 58.5 41 68.3
TPR.G6857 Trifolium pratense HOM05D003218 ORTHO05D003702 3.5e-07 58.5 42 61.9
CDE08G0741 Ceratophyllum demersum HOM05D003218 ORTHO05D003702 4.5e-07 58.2 39 64.1
Ca_01303_v3 Cicer arietinum L. HOM05D003218 ORTHO05D003702 4.5e-07 58.2 42 61.9
DCAR_018926 Daucus carota HOM05D003218 ORTHO05D003702 4.5e-07 58.2 42 71.4
Glyma.11G136100 Glycine max HOM05D003218 ORTHO05D003702 4.5e-07 58.2 42 69.0
Oeu053891.1 Olea europaea HOM05D003218 ORTHO05D003702 4.5e-07 58.2 45 66.7
Potri.001G244204 Populus trichocarpa HOM05D003218 ORTHO05D003702 4.5e-07 58.2 42 73.8
MSTRG.21222 Avicennia marina HOM05D003218 ORTHO05D003702 5.9e-07 57.8 39 74.4
Migut.D00878 Erythranthe guttata HOM05D003218 ORTHO05D003702 5.9e-07 57.8 46 60.9
Glyma.15G035300 Glycine max HOM05D003218 ORTHO05D003702 5.9e-07 57.8 42 64.3
Lalb_Chr19g0137971 Lupinus albus HOM05D003218 ORTHO05D003702 5.9e-07 57.8 43 58.1
BcaC05g24695 Brassica carinata HOM05D003218 ORTHO05D003702 7.7e-07 57.4 36 72.2
BcaC07g42470 Brassica carinata HOM05D003218 ORTHO05D003702 7.7e-07 57.4 36 75.0
C05p05490 Brassica napus HOM05D003218 ORTHO05D003702 7.7e-07 57.4 36 72.2
BolC5t29321H Brassica oleracea HOM05D003218 ORTHO05D003702 7.7e-07 57.4 36 72.2
THA.LOC104800687 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 7.7e-07 57.4 37 75.7
Phvul.005G159000 Phaseolus vulgaris HOM05D003218 ORTHO05D003702 1.0e-06 57.0 42 64.3
SalBow2G2908 Salvia bowleyana HOM05D003218 ORTHO05D003702 1.0e-06 57.0 47 55.3
SGA_v2.0_scaffold54G19476 Striga asiatica HOM05D003218 ORTHO05D003702 1.0e-06 57.0 49 63.3
AT1G07480 Arabidopsis thaliana HOM05D003218 ORTHO05D003702 1.3e-06 56.6 38 68.4
ECA248G3960 Erigeron canadensis HOM05D003218 ORTHO05D003702 1.3e-06 56.6 42 57.1
Psat5g118600 Pisum sativum HOM05D003218 ORTHO05D003702 1.3e-06 56.6 42 61.9
Thhalv10007946m.g Eutrema salsugineum HOM05D003218 ORTHO05D003702 1.7e-06 56.2 36 72.2
Thhalv10007947m.g Eutrema salsugineum HOM05D003218 ORTHO05D003702 1.7e-06 56.2 36 72.2
Oeu007659.1 Olea europaea HOM05D003218 ORTHO05D003702 1.7e-06 56.2 44 61.4
Aa31LG1G6850 Aethionema arabicum HOM05D003218 ORTHO05D003702 2.3e-06 55.8 34 73.5
A10p06010 Brassica napus HOM05D003218 ORTHO05D003702 2.3e-06 55.8 36 69.4
Hund18888 Selenicereus undatus HOM05D003218 ORTHO05D003702 2.9e-06 55.5 44 63.6
BcaC07g41996 Brassica carinata HOM05D003218 ORTHO05D003702 3.8e-06 55.1 36 69.4
A09p66400 Brassica napus HOM05D003218 ORTHO05D003702 3.8e-06 55.1 36 69.4
BraA09t41976Z Brassica rapa HOM05D003218 ORTHO05D003702 3.8e-06 55.1 36 69.4
HanXRQChr01g0010631 Helianthus annuus HOM05D003218 ORTHO05D003702 3.8e-06 55.1 46 52.2
AT1G07470 Arabidopsis thaliana HOM05D003218 ORTHO05D003702 5.0e-06 54.7 38 65.8
arahy.Tifrunner.gnm1.ann1.4KG4VQ Arachis hypogaea HOM05D003218 ORTHO05D003702 5.0e-06 54.7 43 62.8
BraA10t42863Z Brassica rapa HOM05D003218 ORTHO05D003702 5.0e-06 54.7 35 68.6
SEGI_10054 Sequoiadendron giganteum HOM05D003218 ORTHO05D003702 5.0e-06 54.7 34 73.5
Aa31LG5G7120 Aethionema arabicum HOM05D003218 ORTHO05D003702 6.6e-06 54.3 37 67.6
arahy.Tifrunner.gnm1.ann1.YALI07 Arachis hypogaea HOM05D003218 ORTHO05D003702 6.6e-06 54.3 44 56.8
HanXRQChr01g0010401 Helianthus annuus HOM05D003218 ORTHO05D003702 6.6e-06 54.3 46 50.0
Psat5g037120 Pisum sativum HOM05D003218 ORTHO05D003702 6.6e-06 54.3 42 59.5
Sp1g06200 Schrenkiella parvula HOM05D003218 ORTHO05D003702 6.6e-06 54.3 36 72.2
THA.LOC104815781 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 6.6e-06 54.3 38 73.7
arahy.Tifrunner.gnm1.ann1.WL6KIL Arachis hypogaea HOM05D003218 ORTHO05D003702 8.6e-06 53.9 37 64.9
arahy.Tifrunner.gnm1.ann1.ZE4ASG Arachis hypogaea HOM05D003218 ORTHO05D003702 8.6e-06 53.9 46 58.7
Carub.0001s0680 Capsella rubella HOM05D003218 ORTHO05D003702 8.6e-06 53.9 40 65.0


User provided reference genes

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