Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 6.1e-85 317.4 154 100.0
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 6.1e-85 317.4 154 100.0
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 2.9e-58 228.8 154 72.7
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 5.0e-55 218.0 155 70.3
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 4.3e-54 214.9 154 70.8
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.6e-53 213.0 154 66.9
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 4.9e-50 201.4 156 66.0
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 7.0e-49 197.6 164 61.0
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 2.7e-48 195.7 167 59.3
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 7.8e-48 194.1 160 61.2
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 2.3e-47 192.6 166 57.8
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 6.6e-47 191.0 152 63.2
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 3.3e-46 188.7 167 59.3
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 4.3e-46 188.3 157 63.1
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 5.6e-46 188.0 160 59.4
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 9.5e-46 187.2 156 62.2
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.2e-45 186.8 159 61.0
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 8.1e-45 184.1 157 60.5
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 8.1e-45 184.1 154 59.7
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 1.8e-44 183.0 159 59.7
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.8e-44 183.0 165 53.9
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 1.2e-43 180.3 165 60.0
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 1.5e-43 179.9 161 58.4
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 1.5e-43 179.9 159 60.4
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 4.4e-43 178.3 165 53.3
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 5.8e-43 177.9 154 57.8
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 7.5e-43 177.6 154 58.4
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 1.3e-42 176.8 161 56.5
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 2.2e-42 176.0 157 61.8
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 2.9e-42 175.6 160 56.9
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 6.4e-42 174.5 160 56.2
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 6.4e-42 174.5 160 56.2
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 6.4e-42 174.5 154 58.4
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 8.3e-42 174.1 165 52.1
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 8.3e-42 174.1 157 56.1
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 1.1e-41 173.7 197 47.2
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 1.1e-41 173.7 173 54.3
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 1.1e-41 173.7 154 57.8
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.9e-41 172.9 157 56.7
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 1.9e-41 172.9 162 53.7
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.9e-41 172.9 159 54.7
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 3.2e-41 172.2 161 56.5
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 3.2e-41 172.2 164 58.5
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 4.1e-41 171.8 163 55.8
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 9.2e-41 170.6 164 55.5
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 1.6e-40 169.9 163 55.2
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 1.6e-40 169.9 160 56.9
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 2.7e-40 169.1 158 55.7
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 4.6e-40 168.3 156 54.5
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 7.8e-40 167.5 154 56.5
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.7e-39 166.4 161 53.4
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 2.3e-39 166.0 158 57.6
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 2.3e-39 166.0 166 53.0
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 8.6e-39 164.1 156 53.8
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 1.1e-38 163.7 144 59.7
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 3.3e-38 162.2 161 53.4
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 7.3e-38 161.0 160 52.5
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 7.3e-38 161.0 163 54.6
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 2.1e-37 159.5 165 50.3
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 2.8e-37 159.1 160 50.6
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.8e-37 159.1 161 53.4
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 3.6e-37 158.7 166 54.8
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 4.7e-37 158.3 160 50.0
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 8.1e-37 157.5 160 51.9
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 8.1e-37 157.5 156 52.6
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 1.4e-36 156.8 170 48.8
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.8e-36 156.4 166 53.0
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.8e-36 156.4 160 53.1
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 2.3e-36 156.0 159 50.9
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 4.0e-36 155.2 160 50.6
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 3.4e-35 152.1 225 41.3
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 2.9e-34 149.1 155 50.3
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 2.9e-34 149.1 166 50.6
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 3.7e-34 148.7 269 36.8
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 3.7e-34 148.7 159 49.1
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 4.9e-34 148.3 158 50.0
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 4.9e-34 148.3 162 51.2
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 6.4e-34 147.9 161 48.4
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 8.4e-34 147.5 175 46.9
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 1.1e-33 147.1 246 38.2
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 1.4e-33 146.7 158 49.4
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 1.4e-33 146.7 158 49.4
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.4e-33 146.0 156 50.0
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 3.2e-33 145.6 163 50.3
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 3.2e-33 145.6 147 55.8
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 3.2e-33 145.6 197 44.7
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 4.1e-33 145.2 167 48.5
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 9.2e-33 144.1 161 49.1
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 9.2e-33 144.1 161 49.1
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 9.2e-33 144.1 162 49.4
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 1.6e-32 143.3 159 49.7
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 2.1e-32 142.9 167 50.3
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 2.7e-32 142.5 154 46.1
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 2.7e-32 142.5 154 46.1
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 3.5e-32 142.1 194 43.8
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 4.6e-32 141.7 164 47.0
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 4.6e-32 141.7 158 48.1
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 7.8e-32 141.0 166 47.0
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.0e-31 140.6 156 49.4
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.3e-31 140.2 167 46.7
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 2.3e-31 139.4 158 47.5
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 3.0e-31 139.0 167 48.5
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 4.3e-30 135.2 166 45.8
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 4.3e-30 135.2 202 42.1
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 5.6e-30 134.8 160 46.9
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 5.6e-30 134.8 160 47.5
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 5.6e-30 134.8 145 53.8
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 7.3e-30 134.4 158 43.7
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 8.1e-29 131.0 150 47.3
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 8.1e-29 131.0 156 51.9
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 2.4e-28 129.4 168 47.0
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 3.1e-28 129.0 174 42.0
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 6.8e-28 127.9 223 37.7
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 4.4e-27 125.2 152 48.7
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 7.6e-27 124.4 172 39.5
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 4.9e-26 121.7 116 52.6
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 8.4e-26 120.9 114 52.6
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 7.1e-25 117.9 151 45.0
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 9.3e-25 117.5 172 41.9
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 2.1e-24 116.3 155 47.7
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 4.6e-24 115.2 163 40.5
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 6.0e-24 114.8 83 66.3
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 3.9e-23 112.1 151 48.3
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 8.7e-23 110.9 159 43.4
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.9e-22 109.8 160 42.5
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 1.9e-22 109.8 158 41.8
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 3.3e-22 109.0 158 41.8
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 4.3e-22 108.6 158 41.8
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 7.3e-22 107.8 154 44.2
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 7.3e-22 107.8 154 44.2
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 1.6e-21 106.7 154 43.5
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 2.1e-21 106.3 157 40.1
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 2.1e-21 106.3 157 40.1
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 1.4e-20 103.6 151 44.4
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.8e-20 103.2 159 40.9
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 4.0e-20 102.1 148 43.9
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 6.9e-20 101.3 160 40.6
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 1.5e-19 100.1 82 53.7
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 1.5e-19 100.1 157 38.2
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 2.0e-19 99.8 148 43.2
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 4.4e-19 98.6 151 40.4
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 7.6e-19 97.8 81 55.6
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 1.1e-17 94.0 153 35.9
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 1.4e-17 93.6 105 47.6
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.9e-17 93.2 70 67.1
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 3.2e-17 92.4 75 60.0
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 9.3e-17 90.9 81 55.6
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 1.5e-14 83.6 88 55.7
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.6e-13 80.1 88 45.5
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 2.4e-12 76.3 80 52.5
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 2.0e-11 73.2 89 46.1
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 3.4e-11 72.4 77 45.5
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 4.5e-11 72.0 103 37.9
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 7.6e-11 71.2 139 32.4
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 2.2e-10 69.7 116 36.2
Actinidia03382 Actinidia chinensis HOM05D004587 ORTHO05D005512 5.5e-09 65.1 45 71.1
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 1.2e-08 63.9 46 58.7
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 2.7e-08 62.8 87 46.0
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 1.8e-07 60.1 88 44.3


User provided reference genes

Program Settings