Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.8e-134 482.6 247 100.0
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 6.5e-129 464.2 247 94.7
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 7.9e-127 457.2 246 93.1
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 7.9e-127 457.2 247 93.1
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 1.3e-126 456.4 247 93.1
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 3.9e-126 454.9 248 93.5
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 5.1e-126 454.5 247 92.3
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 5.1e-126 454.5 247 92.3
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 5.1e-126 454.5 247 92.3
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 8.7e-126 453.8 245 92.2
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 7.4e-125 450.7 245 91.8
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 7.4e-125 450.7 245 91.8
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 7.4e-125 450.7 247 91.1
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 9.7e-125 450.3 247 91.1
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 1.3e-124 449.9 247 91.5
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 1.3e-124 449.9 247 90.7
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 1.3e-124 449.9 247 91.5
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 1.6e-124 449.5 247 90.7
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 1.6e-124 449.5 245 91.0
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 1.6e-124 449.5 245 90.6
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 2.2e-124 449.1 247 91.1
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.8e-124 448.7 247 91.5
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 3.7e-124 448.4 245 91.0
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 3.7e-124 448.4 245 91.0
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 3.7e-124 448.4 245 91.8
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 4.8e-124 448.0 246 90.7
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 4.8e-124 448.0 248 91.5
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 6.3e-124 447.6 247 90.3
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 6.3e-124 447.6 245 91.0
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 6.3e-124 447.6 245 91.4
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 8.2e-124 447.2 247 90.7
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 8.2e-124 447.2 247 90.3
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 8.2e-124 447.2 247 90.3
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.4e-123 446.4 247 90.3
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.4e-123 446.4 247 90.3
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.4e-123 446.4 247 90.3
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 1.8e-123 446.0 244 91.4
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 2.4e-123 445.7 248 91.1
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 2.4e-123 445.7 245 89.0
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 3.1e-123 445.3 247 90.3
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 3.1e-123 445.3 244 91.4
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 4.1e-123 444.9 245 92.7
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 5.3e-123 444.5 250 90.0
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 6.9e-123 444.1 247 89.1
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 9.0e-123 443.7 245 91.0
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 9.0e-123 443.7 247 89.9
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 9.0e-123 443.7 247 89.9
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 9.0e-123 443.7 244 91.0
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 9.0e-123 443.7 247 89.5
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 9.0e-123 443.7 246 89.4
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 1.2e-122 443.4 247 89.9
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 4.5e-122 441.4 246 88.6
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 5.9e-122 441.0 247 89.9
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 5.9e-122 441.0 247 90.3
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 7.7e-122 440.7 247 90.3
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 7.7e-122 440.7 247 90.3
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 7.7e-122 440.7 248 89.5
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 7.7e-122 440.7 248 89.5
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 1.0e-121 440.3 245 88.6
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 1.3e-121 439.9 247 87.4
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 1.3e-121 439.9 247 87.4
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 1.3e-121 439.9 247 88.7
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 1.7e-121 439.5 247 89.1
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 1.7e-121 439.5 245 89.0
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 2.9e-121 438.7 246 89.0
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 2.9e-121 438.7 247 89.9
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 3.8e-121 438.3 246 89.8
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 3.8e-121 438.3 246 89.8
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 5.0e-121 438.0 247 89.1
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 5.0e-121 438.0 248 89.1
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 5.0e-121 438.0 245 89.4
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 6.5e-121 437.6 247 89.1
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 6.5e-121 437.6 247 89.1
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 6.5e-121 437.6 247 87.4
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 8.5e-121 437.2 247 89.1
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 8.5e-121 437.2 245 90.2
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 8.5e-121 437.2 247 89.1
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 1.1e-120 436.8 247 88.7
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 1.1e-120 436.8 247 89.9
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 1.4e-120 436.4 245 88.6
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 1.4e-120 436.4 247 87.0
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 1.9e-120 436.0 247 89.5
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 1.9e-120 436.0 247 89.5
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 2.5e-120 435.6 245 88.6
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 4.2e-120 434.9 247 89.1
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 4.2e-120 434.9 247 89.1
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 5.5e-120 434.5 247 87.9
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 5.5e-120 434.5 244 89.3
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 5.5e-120 434.5 247 89.1
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 7.2e-120 434.1 247 88.3
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 7.2e-120 434.1 247 88.3
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 7.2e-120 434.1 247 88.3
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 7.2e-120 434.1 247 88.3
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 9.4e-120 433.7 247 87.4
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 9.4e-120 433.7 245 89.0
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 1.2e-119 433.3 247 88.3
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 1.6e-119 433.0 247 87.4
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 1.6e-119 433.0 270 83.0
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 2.1e-119 432.6 248 88.7
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 2.7e-119 432.2 247 87.9
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 2.7e-119 432.2 247 88.3
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 2.7e-119 432.2 247 88.3
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 7.9e-119 430.6 247 87.9
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 1.0e-118 430.3 245 87.8
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 1.0e-118 430.3 286 80.1
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 1.4e-118 429.9 245 86.9
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 1.4e-118 429.9 247 87.0
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 1.4e-118 429.9 247 87.9
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 1.4e-118 429.9 247 87.0
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.4e-118 429.9 235 91.1
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.4e-118 429.9 248 89.1
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 3.9e-118 428.3 247 87.4
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 1.1e-117 426.8 290 77.6
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 2.0e-117 426.0 248 87.1
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 9.7e-117 423.7 248 86.7
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.3e-116 423.3 247 86.2
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 1.7e-116 422.9 306 72.9
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 2.2e-116 422.5 247 85.8
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 4.8e-116 421.4 248 86.7
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 6.3e-116 421.0 248 85.9
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 6.3e-116 421.0 247 85.0
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 1.8e-115 419.5 248 85.5
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 3.1e-115 418.7 261 82.0
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 4.1e-115 418.3 248 85.5
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 1.2e-114 416.8 248 85.5
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 1.0e-113 413.7 247 85.4
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 1.8e-110 402.9 251 79.7
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 3.9e-110 401.7 334 66.5
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 2.0e-109 399.4 249 81.5
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 1.1e-107 393.7 245 80.0
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.8e-107 392.9 211 91.0
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.8e-107 392.9 211 91.0
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 3.1e-107 392.1 266 77.4
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 5.3e-107 391.3 251 77.7
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 7.0e-107 391.0 253 76.3
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 2.6e-106 389.0 380 57.6
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 1.7e-105 386.3 251 76.1
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 2.9e-105 385.6 249 78.3
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 2.2e-100 369.4 360 58.9
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 2.4e-99 365.9 213 85.4
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 3.4e-93 345.5 245 72.7
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 3.6e-87 325.5 247 70.9
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 4.7e-87 325.1 198 87.4
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 6.1e-87 324.7 245 71.0
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.2e-85 320.5 165 97.6
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 5.9e-82 308.1 179 86.6
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 3.6e-79 298.9 172 89.5
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 8.0e-79 297.7 172 89.5
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 2.3e-78 296.2 166 86.7
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 5.2e-70 268.5 280 55.0
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 4.4e-61 238.8 242 49.6
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 3.0e-57 226.1 138 81.2
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 3.9e-49 199.1 233 44.6
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 4.0e-46 189.1 249 49.0
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 2.0e-45 186.8 246 42.7
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 1.3e-44 184.1 102 89.2
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 3.0e-41 172.9 97 88.7
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 3.6e-39 166.0 165 59.4
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 4.8e-39 165.6 199 53.3
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 2.8e-31 139.8 139 56.1
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 2.6e-29 133.3 82 85.4
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 4.2e-27 125.9 84 73.8
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 3.9e-25 119.4 233 36.1
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 5.1e-25 119.0 82 78.0
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 5.1e-25 119.0 83 74.7
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 2.5e-24 116.7 212 42.0
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 1.3e-20 104.4 100 50.0
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 3.3e-16 89.7 57 82.5
Migut.L00276 Erythranthe guttata HOM05D003856 ORTHO05D004547 6.3e-15 85.5 51 80.4
Hund21152 Selenicereus undatus HOM05D003856 ORTHO05D004547 2.4e-14 83.6 45 82.2
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 6.9e-14 82.0 76 63.2
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 1.2e-13 81.3 51 82.4
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 2.0e-13 80.5 52 84.6
Dinv13969 Davidia involucrata HOM05D003856 ORTHO05D004547 1.4e-11 74.3 79 55.7
vmacro16921 Vaccinium macrocarpon HOM05D000007 ORTHO05D013648 2.7e-10 70.1 85 51.8
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 3.5e-10 69.7 45 82.2
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 7.9e-10 68.6 38 78.9
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 1.0e-09 68.2 90 52.2
Rhsim07G0218900 Rhododendron simsii HOM05D003856 ORTHO05D013648 1.6e-07 60.8 98 46.9
A05p11440 Brassica napus HOM05D003856 ORTHO05D004547 2.8e-07 60.1 36 75.0
BraA05t20093Z Brassica rapa HOM05D003856 ORTHO05D004547 2.8e-07 60.1 36 75.0
C04p14930 Brassica napus HOM05D003856 ORTHO05D004547 8.2e-07 58.5 36 72.2
vmacro22601 Vaccinium macrocarpon HOM05D003856 ORTHO05D426869 2.4e-06 57.0 89 47.2


User provided reference genes

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